HEADER IMMUNE SYSTEM 26-FEB-04 1SHM TITLE CONVERGENT SOLUTIONS TO VHH DOMAIN STABILIZATION FROM NATURAL AND IN TITLE 2 VITRO EVOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY RIG; COMPND 3 CHAIN: A, B, D, E; COMPND 4 FRAGMENT: RIG VHH; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HEAVY CHAIN VARIABLE DOMAIN, VHH DOMAIN, IMMUNOGLOBULIN, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.J.BOND,C.WIESMANN,J.C.MARSTERS,S.S.SIDHU REVDAT 5 23-AUG-23 1SHM 1 REMARK REVDAT 4 13-JUL-11 1SHM 1 VERSN REVDAT 3 24-FEB-09 1SHM 1 VERSN REVDAT 2 19-APR-05 1SHM 1 JRNL REVDAT 1 08-MAR-05 1SHM 0 JRNL AUTH C.J.BOND,C.WIESMANN,J.C.MARSTERS,S.S.SIDHU JRNL TITL A STRUCTURE-BASED DATABASE OF ANTIBODY VARIABLE DOMAIN JRNL TITL 2 DIVERSITY. JRNL REF J.MOL.BIOL. V. 348 699 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15826665 JRNL DOI 10.1016/J.JMB.2005.02.063 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1635 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1710 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3578 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3120 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4836 ; 1.238 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7215 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 5.380 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4077 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 789 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 517 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3674 ; 0.255 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2282 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 87 ; 0.311 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2271 ; 2.988 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3583 ; 4.465 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1307 ; 3.621 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1253 ; 5.032 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4055 0.5196 1.8157 REMARK 3 T TENSOR REMARK 3 T11: 0.0452 T22: 0.0638 REMARK 3 T33: 0.0548 T12: -0.0091 REMARK 3 T13: 0.0119 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.2777 L22: 1.5097 REMARK 3 L33: 0.9623 L12: 0.0115 REMARK 3 L13: 0.0826 L23: 0.2208 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.0427 S13: -0.0024 REMARK 3 S21: -0.0578 S22: -0.0257 S23: -0.0105 REMARK 3 S31: -0.0486 S32: -0.0360 S33: 0.0676 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0824 4.7041 25.9819 REMARK 3 T TENSOR REMARK 3 T11: 0.0734 T22: 0.0991 REMARK 3 T33: 0.0852 T12: -0.0109 REMARK 3 T13: 0.0092 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.9140 L22: 1.8335 REMARK 3 L33: 1.7374 L12: -0.0121 REMARK 3 L13: 0.1025 L23: 0.2980 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.1085 S13: -0.0552 REMARK 3 S21: 0.0005 S22: -0.0236 S23: -0.0006 REMARK 3 S31: 0.0958 S32: -0.0605 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 113 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3392 -26.9358 2.0896 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.1009 REMARK 3 T33: 0.1127 T12: -0.0066 REMARK 3 T13: 0.0038 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.6683 L22: 1.8441 REMARK 3 L33: 0.9753 L12: 0.1827 REMARK 3 L13: 0.3521 L23: 0.2389 REMARK 3 S TENSOR REMARK 3 S11: 0.0982 S12: 0.0651 S13: -0.0263 REMARK 3 S21: 0.0010 S22: -0.0354 S23: -0.0051 REMARK 3 S31: 0.0697 S32: -0.0282 S33: -0.0627 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 113 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6480 -23.0472 28.3643 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: 0.0133 REMARK 3 T33: 0.0204 T12: 0.0037 REMARK 3 T13: -0.0004 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.6698 L22: 1.7101 REMARK 3 L33: 1.8369 L12: 0.4105 REMARK 3 L13: -0.1782 L23: 0.1804 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.0316 S13: 0.0312 REMARK 3 S21: -0.0195 S22: 0.0314 S23: -0.0172 REMARK 3 S31: -0.0637 S32: -0.0995 S33: -0.0461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HCV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4K, 0.3M AMMONIUM SULFATE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.35550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE RELEVANT BIOLOGICAL ASSEMBLY IS ONE VH DOMAIN. THE REMARK 300 ASYMMETRIC UNIT IS COMPOSED OF 4 INDEPENDENT VH DOMAINS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLY A 98 REMARK 465 ARG A 98A REMARK 465 SER A 98B REMARK 465 VAL A 98C REMARK 465 PHE A 98D REMARK 465 ASN A 98E REMARK 465 LEU A 98F REMARK 465 ARG A 98G REMARK 465 ASP B 1 REMARK 465 GLY B 98 REMARK 465 ARG B 98A REMARK 465 SER B 98B REMARK 465 VAL B 98C REMARK 465 PHE B 98D REMARK 465 ASN B 98E REMARK 465 LEU B 98F REMARK 465 ARG B 98G REMARK 465 ARG B 98H REMARK 465 ASP D 1 REMARK 465 GLY D 26 REMARK 465 ALA D 27 REMARK 465 THR D 28 REMARK 465 GLY D 29 REMARK 465 GLY D 98 REMARK 465 ARG D 98A REMARK 465 SER D 98B REMARK 465 VAL D 98C REMARK 465 PHE D 98D REMARK 465 ASN D 98E REMARK 465 LEU D 98F REMARK 465 ARG D 98G REMARK 465 ARG D 98H REMARK 465 ASP E 1 REMARK 465 GLY E 98 REMARK 465 ARG E 98A REMARK 465 SER E 98B REMARK 465 VAL E 98C REMARK 465 PHE E 98D REMARK 465 ASN E 98E REMARK 465 LEU E 98F REMARK 465 ARG E 98G REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL B 2 O HOH B 137 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 33 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 66 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG E 66 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG E 66 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 88 170.32 176.65 REMARK 500 ALA B 88 166.09 176.68 REMARK 500 ALA D 88 166.07 172.90 REMARK 500 VAL E 48 -56.74 -121.50 REMARK 500 ALA E 88 165.88 175.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HCV RELATED DB: PDB REMARK 900 RELATED ID: 1MEL RELATED DB: PDB REMARK 900 RELATED ID: 1F2X RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ORIGINAL GENE FOR THE PROTEIN WAS CLONED FROM REMARK 999 LLAMA (GB 4165492). ONE LOOP (RESIDUES 96-101, REMARK 999 SEQUENCE: RIGRSVFNLRRESWVTW) REPLACES THE NATURAL REMARK 999 SEQUENCE WITH AN ENGINEERED SEQUENCE. DBREF 1SHM A 1 113 PDB 1SHM 1SHM 1 113 DBREF 1SHM B 1 113 PDB 1SHM 1SHM 1 113 DBREF 1SHM D 1 113 PDB 1SHM 1SHM 1 113 DBREF 1SHM E 1 113 PDB 1SHM 1SHM 1 113 SEQRES 1 A 127 ASP VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 127 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 127 ALA THR GLY SER THR TYR ASP MET GLY TRP PHE ARG GLN SEQRES 4 A 127 ALA PRO GLY LYS GLU ARG GLU SER VAL ALA ALA ILE ASN SEQRES 5 A 127 TRP GLY SER ALA GLY THR TYR TYR ALA SER SER VAL ARG SEQRES 6 A 127 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS LYS THR SEQRES 7 A 127 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 A 127 ALA VAL TYR THR CYS GLY ALA GLY ARG ILE GLY ARG SER SEQRES 9 A 127 VAL PHE ASN LEU ARG ARG GLU SER TRP VAL THR TRP TRP SEQRES 10 A 127 GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 B 127 ASP VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 127 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 127 ALA THR GLY SER THR TYR ASP MET GLY TRP PHE ARG GLN SEQRES 4 B 127 ALA PRO GLY LYS GLU ARG GLU SER VAL ALA ALA ILE ASN SEQRES 5 B 127 TRP GLY SER ALA GLY THR TYR TYR ALA SER SER VAL ARG SEQRES 6 B 127 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS LYS THR SEQRES 7 B 127 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 127 ALA VAL TYR THR CYS GLY ALA GLY ARG ILE GLY ARG SER SEQRES 9 B 127 VAL PHE ASN LEU ARG ARG GLU SER TRP VAL THR TRP TRP SEQRES 10 B 127 GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 D 127 ASP VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 127 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 127 ALA THR GLY SER THR TYR ASP MET GLY TRP PHE ARG GLN SEQRES 4 D 127 ALA PRO GLY LYS GLU ARG GLU SER VAL ALA ALA ILE ASN SEQRES 5 D 127 TRP GLY SER ALA GLY THR TYR TYR ALA SER SER VAL ARG SEQRES 6 D 127 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS LYS THR SEQRES 7 D 127 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 127 ALA VAL TYR THR CYS GLY ALA GLY ARG ILE GLY ARG SER SEQRES 9 D 127 VAL PHE ASN LEU ARG ARG GLU SER TRP VAL THR TRP TRP SEQRES 10 D 127 GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 1 E 127 ASP VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 E 127 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 E 127 ALA THR GLY SER THR TYR ASP MET GLY TRP PHE ARG GLN SEQRES 4 E 127 ALA PRO GLY LYS GLU ARG GLU SER VAL ALA ALA ILE ASN SEQRES 5 E 127 TRP GLY SER ALA GLY THR TYR TYR ALA SER SER VAL ARG SEQRES 6 E 127 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS LYS THR SEQRES 7 E 127 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 E 127 ALA VAL TYR THR CYS GLY ALA GLY ARG ILE GLY ARG SER SEQRES 9 E 127 VAL PHE ASN LEU ARG ARG GLU SER TRP VAL THR TRP TRP SEQRES 10 E 127 GLY GLN GLY THR GLN VAL THR VAL SER SER FORMUL 5 HOH *273(H2 O) HELIX 1 1 SER A 61 ARG A 64 5 4 HELIX 2 2 LYS A 83 THR A 87 5 5 HELIX 3 3 LYS B 83 THR B 87 5 5 HELIX 4 4 SER D 61 ARG D 64 5 4 HELIX 5 5 LYS D 83 THR D 87 5 5 HELIX 6 6 SER E 61 ARG E 64 5 4 HELIX 7 7 LYS E 83 THR E 87 5 5 SHEET 1 A 4 GLN A 3 SER A 7 0 SHEET 2 A 4 LEU A 18 SER A 25 -1 O SER A 25 N GLN A 3 SHEET 3 A 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 A 4 PHE A 67 ASP A 72 -1 N THR A 68 O GLN A 81 SHEET 1 B12 THR A 57 TYR A 59 0 SHEET 2 B12 GLU A 46 ILE A 51 -1 N ALA A 50 O TYR A 58 SHEET 3 B12 ASP A 33 GLN A 39 -1 N TRP A 36 O ALA A 49 SHEET 4 B12 ALA A 88 GLY A 95 -1 O VAL A 89 N GLN A 39 SHEET 5 B12 THR A 107 SER A 112 -1 O THR A 107 N TYR A 90 SHEET 6 B12 GLY A 10 GLN A 13 1 N GLY A 10 O THR A 110 SHEET 7 B12 GLY D 10 GLN D 13 -1 O LEU D 11 N LEU A 11 SHEET 8 B12 THR D 107 SER D 112 1 O THR D 110 N VAL D 12 SHEET 9 B12 ALA D 88 GLY D 95 -1 N ALA D 88 O VAL D 109 SHEET 10 B12 ASP D 33 GLN D 39 -1 N GLY D 35 O GLY D 93 SHEET 11 B12 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 12 B12 THR D 57 TYR D 59 -1 O TYR D 58 N ALA D 50 SHEET 1 C 8 VAL A 100 TRP A 103 0 SHEET 2 C 8 ALA A 88 GLY A 95 -1 N ALA A 94 O THR A 101 SHEET 3 C 8 THR A 107 SER A 112 -1 O THR A 107 N TYR A 90 SHEET 4 C 8 GLY A 10 GLN A 13 1 N GLY A 10 O THR A 110 SHEET 5 C 8 GLY D 10 GLN D 13 -1 O LEU D 11 N LEU A 11 SHEET 6 C 8 THR D 107 SER D 112 1 O THR D 110 N VAL D 12 SHEET 7 C 8 ALA D 88 GLY D 95 -1 N ALA D 88 O VAL D 109 SHEET 8 C 8 VAL D 100 TRP D 103 -1 O THR D 101 N ALA D 94 SHEET 1 D 4 GLN B 3 SER B 7 0 SHEET 2 D 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 D 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 D 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 E12 THR B 57 TYR B 59 0 SHEET 2 E12 GLU B 46 ILE B 51 -1 N ALA B 50 O TYR B 58 SHEET 3 E12 ASP B 33 GLN B 39 -1 N TRP B 36 O ALA B 49 SHEET 4 E12 ALA B 88 GLY B 95 -1 O GLY B 93 N GLY B 35 SHEET 5 E12 THR B 107 SER B 112 -1 O THR B 107 N TYR B 90 SHEET 6 E12 GLY B 10 GLN B 13 1 N GLY B 10 O THR B 110 SHEET 7 E12 GLY E 10 GLN E 13 -1 O LEU E 11 N LEU B 11 SHEET 8 E12 THR E 107 SER E 112 1 O THR E 110 N VAL E 12 SHEET 9 E12 ALA E 88 GLY E 95 -1 N TYR E 90 O THR E 107 SHEET 10 E12 ASP E 33 GLN E 39 -1 N ASP E 33 O GLY E 95 SHEET 11 E12 GLU E 46 ASN E 52 -1 O GLU E 46 N ARG E 38 SHEET 12 E12 THR E 57 TYR E 59 -1 O TYR E 58 N ALA E 50 SHEET 1 F 8 VAL B 100 TRP B 103 0 SHEET 2 F 8 ALA B 88 GLY B 95 -1 N ALA B 94 O THR B 101 SHEET 3 F 8 THR B 107 SER B 112 -1 O THR B 107 N TYR B 90 SHEET 4 F 8 GLY B 10 GLN B 13 1 N GLY B 10 O THR B 110 SHEET 5 F 8 GLY E 10 GLN E 13 -1 O LEU E 11 N LEU B 11 SHEET 6 F 8 THR E 107 SER E 112 1 O THR E 110 N VAL E 12 SHEET 7 F 8 ALA E 88 GLY E 95 -1 N TYR E 90 O THR E 107 SHEET 8 F 8 VAL E 100 TRP E 103 -1 O THR E 101 N ALA E 94 SHEET 1 G 4 LEU D 4 SER D 7 0 SHEET 2 G 4 LEU D 18 ALA D 24 -1 O SER D 21 N SER D 7 SHEET 3 G 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 G 4 PHE D 67 ASP D 72 -1 N THR D 68 O GLN D 81 SHEET 1 H 4 GLN E 3 SER E 7 0 SHEET 2 H 4 LEU E 18 SER E 25 -1 O ALA E 23 N GLN E 5 SHEET 3 H 4 THR E 77 MET E 82 -1 O MET E 82 N LEU E 18 SHEET 4 H 4 PHE E 67 ASP E 72 -1 N SER E 70 O TYR E 79 SSBOND 1 CYS B 22 CYS B 92 1555 1555 2.47 SSBOND 2 CYS D 22 CYS D 92 1555 1555 2.49 SSBOND 3 CYS E 22 CYS E 92 1555 1555 2.05 CRYST1 34.211 120.711 52.246 90.00 103.32 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029230 0.000000 0.006920 0.00000 SCALE2 0.000000 0.008284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019669 0.00000