HEADER PROTEIN BINDING 03-MAR-04 1SJ6 TITLE NMR STRUCTURE AND REGULATED EXPRESSION IN APL CELL OF HUMAN SH3BGRL3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SH3 DOMAIN-BINDING PROTEIN SH3BP-1, P1725, TNF INHIBITORY COMPND 5 PROTEIN, SH3BGRL3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHEBGRL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS THIOREDOXIN, NUCLEAR PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.XU,Y.TANG,Y.XU,J.WU,Y.SHI,Q.ZHANG,P.ZHENG,Y.DU REVDAT 5 29-MAY-24 1SJ6 1 REMARK REVDAT 4 02-MAR-22 1SJ6 1 REMARK SEQADV REVDAT 3 24-FEB-09 1SJ6 1 VERSN REVDAT 2 31-MAY-05 1SJ6 1 JRNL REVDAT 1 22-MAR-05 1SJ6 0 JRNL AUTH C.XU,P.ZHENG,S.SHEN,Y.XU,L.WEI,H.GAO,S.WANG,C.ZHU,Y.TANG, JRNL AUTH 2 J.WU,Q.ZHANG,Y.SHI JRNL TITL NMR STRUCTURE AND REGULATED EXPRESSION IN APL CELL OF HUMAN JRNL TITL 2 SH3BGRL3. JRNL REF FEBS LETT. V. 579 2788 2005 JRNL REFN ISSN 0014-5793 JRNL PMID 15907482 JRNL DOI 10.1016/J.FEBSLET.2005.04.011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, CNS 1.1 REMARK 3 AUTHORS : F.DELAGLIO (NMRPIPE), A.T.BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1463 RESTRAINTS, 1306 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 101 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 56 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS REMARK 4 REMARK 4 1SJ6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021751. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL, 20MM PHOSPHATE REMARK 210 BUFFER REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2MM SH3BGRL3 U-15N, 13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL, REMARK 210 PH7.0; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D HCCH-COSY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; 3D CBCA(CO)NH; REMARK 210 3D_CBCANH; 3D HNCO; 3D_H(CCO)NH_ REMARK 210 TOCSY; 3D_C(CO)NH_TOCSY; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, SPARKY SPARKY3 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 87 H LEU A 92 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 12 144.68 63.38 REMARK 500 1 ASN A 56 113.58 179.49 REMARK 500 1 ALA A 59 -166.16 -57.29 REMARK 500 1 ASN A 66 78.92 -109.55 REMARK 500 1 ASP A 68 37.06 -148.02 REMARK 500 1 LEU A 90 -67.62 -96.35 REMARK 500 1 ALA A 93 68.81 61.40 REMARK 500 1 LEU A 94 30.32 -98.29 REMARK 500 2 VAL A 11 73.83 -102.43 REMARK 500 2 GLN A 34 54.09 -98.66 REMARK 500 2 ASN A 56 114.70 176.56 REMARK 500 2 ALA A 59 -162.80 -58.42 REMARK 500 2 ASP A 68 28.54 -161.24 REMARK 500 2 LEU A 90 -65.44 -100.10 REMARK 500 2 LEU A 92 27.63 48.34 REMARK 500 3 ASN A 56 113.44 179.33 REMARK 500 3 ALA A 59 -165.41 -60.67 REMARK 500 3 PRO A 62 86.82 -67.35 REMARK 500 3 ASN A 66 78.90 -105.64 REMARK 500 3 ASP A 68 41.05 -145.28 REMARK 500 3 ASP A 73 -164.50 -160.04 REMARK 500 3 LEU A 86 -42.85 -29.10 REMARK 500 3 LEU A 90 -71.71 -95.11 REMARK 500 3 LEU A 92 -80.35 58.73 REMARK 500 3 ALA A 93 -42.59 -168.39 REMARK 500 3 LEU A 94 104.01 62.16 REMARK 500 4 GLN A 42 -57.08 -163.52 REMARK 500 4 ASN A 56 115.83 -179.77 REMARK 500 4 ALA A 59 -166.01 -57.73 REMARK 500 4 ASN A 66 43.08 -97.56 REMARK 500 4 LEU A 90 -67.20 -100.16 REMARK 500 4 LEU A 92 25.85 49.81 REMARK 500 5 SER A 14 -167.13 -75.58 REMARK 500 5 ARG A 32 41.95 70.81 REMARK 500 5 GLN A 34 51.47 -112.36 REMARK 500 5 ASN A 56 113.54 178.52 REMARK 500 5 ALA A 59 -165.21 -57.95 REMARK 500 5 ASP A 68 30.12 -161.81 REMARK 500 5 ASP A 73 -165.09 -160.11 REMARK 500 5 LEU A 90 -72.11 -98.78 REMARK 500 5 LEU A 92 -74.45 61.65 REMARK 500 5 ALA A 93 -68.86 -148.17 REMARK 500 6 GLN A 34 54.11 -98.89 REMARK 500 6 ASN A 56 113.28 -179.83 REMARK 500 6 ALA A 59 -165.74 -58.91 REMARK 500 6 PRO A 62 95.82 -60.56 REMARK 500 6 ASP A 68 35.10 70.81 REMARK 500 6 LEU A 90 -66.50 -100.10 REMARK 500 6 LEU A 92 27.98 47.59 REMARK 500 6 ALA A 93 33.69 -97.53 REMARK 500 REMARK 500 THIS ENTRY HAS 185 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1SJ6 A 1 93 UNP Q9H299 SH3L3_HUMAN 1 93 SEQADV 1SJ6 LEU A 94 UNP Q9H299 EXPRESSION TAG SEQADV 1SJ6 GLU A 95 UNP Q9H299 EXPRESSION TAG SEQADV 1SJ6 HIS A 96 UNP Q9H299 EXPRESSION TAG SEQADV 1SJ6 HIS A 97 UNP Q9H299 EXPRESSION TAG SEQADV 1SJ6 HIS A 98 UNP Q9H299 EXPRESSION TAG SEQADV 1SJ6 HIS A 99 UNP Q9H299 EXPRESSION TAG SEQADV 1SJ6 HIS A 100 UNP Q9H299 EXPRESSION TAG SEQADV 1SJ6 HIS A 101 UNP Q9H299 EXPRESSION TAG SEQRES 1 A 101 MET SER GLY LEU ARG VAL TYR SER THR SER VAL THR GLY SEQRES 2 A 101 SER ARG GLU ILE LYS SER GLN GLN SER GLU VAL THR ARG SEQRES 3 A 101 ILE LEU ASP GLY LYS ARG ILE GLN TYR GLN LEU VAL ASP SEQRES 4 A 101 ILE SER GLN ASP ASN ALA LEU ARG ASP GLU MET ARG ALA SEQRES 5 A 101 LEU ALA GLY ASN PRO LYS ALA THR PRO PRO GLN ILE VAL SEQRES 6 A 101 ASN GLY ASP GLN TYR CYS GLY ASP TYR GLU LEU PHE VAL SEQRES 7 A 101 GLU ALA VAL GLU GLN ASN THR LEU GLN GLU PHE LEU LYS SEQRES 8 A 101 LEU ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLU A 16 LYS A 31 1 16 HELIX 2 2 ASP A 43 ALA A 54 1 12 HELIX 3 3 TYR A 74 GLU A 82 1 9 HELIX 4 4 THR A 85 LYS A 91 1 7 SHEET 1 A 4 GLN A 36 ASP A 39 0 SHEET 2 A 4 ARG A 5 SER A 8 1 N VAL A 6 O VAL A 38 SHEET 3 A 4 GLN A 63 VAL A 65 -1 O VAL A 65 N ARG A 5 SHEET 4 A 4 TYR A 70 ASP A 73 -1 O GLY A 72 N ILE A 64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1