data_1SJX # _entry.id 1SJX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1SJX RCSB RCSB021773 WWPDB D_1000021773 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SJX _pdbx_database_status.recvd_initial_deposition_date 2004-03-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dolk, E.' 1 'van der Vaart, M.' 2 'Hulsik, D.L.' 3 'Vriend, G.' 4 'de Haard, H.' 5 'Spinelli, S.' 6 'Cambillau, C.' 7 'Frenken, L.' 8 'Verrips, T.' 9 # _citation.id primary _citation.title 'Isolation of llama antibody fragments for prevention of dandruff by phage display in shampoo.' _citation.journal_abbrev Appl.Environ.Microbiol. _citation.journal_volume 71 _citation.page_first 442 _citation.page_last 450 _citation.year 2005 _citation.journal_id_ASTM AEMIDF _citation.country US _citation.journal_id_ISSN 0099-2240 _citation.journal_id_CSD 2106 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15640220 _citation.pdbx_database_id_DOI 10.1128/AEM.71.1.442-450.2005 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Dolk, E.' 1 primary 'van der Vaart, M.' 2 primary 'Hulsik, D.L.' 3 primary 'Vriend, G.' 4 primary 'de Haard, H.' 5 primary 'Spinelli, S.' 6 primary 'Cambillau, C.' 7 primary 'Frenken, L.' 8 primary 'Verrips, T.' 9 # _cell.entry_id 1SJX _cell.length_a 71.40 _cell.length_b 71.40 _cell.length_c 74.84 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 120.0 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SJX _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'immunoglobulin VH domain' 13214.672 1 ? ? ? ? 2 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 3 water nat water 18.015 86 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QVQLQESGGGLVQAGGSLRLSCQASGNIFRINDMGWYRQAPGTQRELVAAITSGGSTKYADSVKGRFTISKDNAKNTVYL QMNSLKPEDTAVYYCAAEDRHRIGTVGYWGQGTQVTVSSVHH ; _entity_poly.pdbx_seq_one_letter_code_can ;QVQLQESGGGLVQAGGSLRLSCQASGNIFRINDMGWYRQAPGTQRELVAAITSGGSTKYADSVKGRFTISKDNAKNTVYL QMNSLKPEDTAVYYCAAEDRHRIGTVGYWGQGTQVTVSSVHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 GLN n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 ALA n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 GLN n 1 24 ALA n 1 25 SER n 1 26 GLY n 1 27 ASN n 1 28 ILE n 1 29 PHE n 1 30 ARG n 1 31 ILE n 1 32 ASN n 1 33 ASP n 1 34 MET n 1 35 GLY n 1 36 TRP n 1 37 TYR n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 THR n 1 44 GLN n 1 45 ARG n 1 46 GLU n 1 47 LEU n 1 48 VAL n 1 49 ALA n 1 50 ALA n 1 51 ILE n 1 52 THR n 1 53 SER n 1 54 GLY n 1 55 GLY n 1 56 SER n 1 57 THR n 1 58 LYS n 1 59 TYR n 1 60 ALA n 1 61 ASP n 1 62 SER n 1 63 VAL n 1 64 LYS n 1 65 GLY n 1 66 ARG n 1 67 PHE n 1 68 THR n 1 69 ILE n 1 70 SER n 1 71 LYS n 1 72 ASP n 1 73 ASN n 1 74 ALA n 1 75 LYS n 1 76 ASN n 1 77 THR n 1 78 VAL n 1 79 TYR n 1 80 LEU n 1 81 GLN n 1 82 MET n 1 83 ASN n 1 84 SER n 1 85 LEU n 1 86 LYS n 1 87 PRO n 1 88 GLU n 1 89 ASP n 1 90 THR n 1 91 ALA n 1 92 VAL n 1 93 TYR n 1 94 TYR n 1 95 CYS n 1 96 ALA n 1 97 ALA n 1 98 GLU n 1 99 ASP n 1 100 ARG n 1 101 HIS n 1 102 ARG n 1 103 ILE n 1 104 GLY n 1 105 THR n 1 106 VAL n 1 107 GLY n 1 108 TYR n 1 109 TRP n 1 110 GLY n 1 111 GLN n 1 112 GLY n 1 113 THR n 1 114 GLN n 1 115 VAL n 1 116 THR n 1 117 VAL n 1 118 SER n 1 119 SER n 1 120 VAL n 1 121 HIS n 1 122 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name llama _entity_src_gen.gene_src_genus Lama _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lama glama' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9844 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell lymphocytes _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ;baker's yeast ; _entity_src_gen.pdbx_host_org_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4932 _entity_src_gen.host_org_genus Saccharomyces _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Protein selected by phage display' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1SJX _struct_ref.pdbx_db_accession 1SJX _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1SJX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 122 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1SJX _struct_ref_seq.db_align_beg 801 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 922 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 801 _struct_ref_seq.pdbx_auth_seq_align_end 922 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1SJX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 70.48 _exptl_crystal.description ? _exptl_crystal.density_Matthews 4.17 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.pdbx_details '10% PEG 6K, 100mM Hepes, 5% MPD, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-06-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9326 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9326 # _reflns.entry_id 1SJX _reflns.observed_criterion_sigma_F 3.5 _reflns.observed_criterion_sigma_I 3.5 _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 24 _reflns.number_all ? _reflns.number_obs 11594 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rsym_value 0.042 _reflns.pdbx_netI_over_sigmaI 3.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.2 _reflns_shell.pdbx_Rsym_value 0.2 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1637 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1SJX _refine.ls_number_reflns_obs 10763 _refine.ls_number_reflns_all 10773 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.00 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.87 _refine.ls_R_factor_obs 0.19163 _refine.ls_R_factor_all 0.2 _refine.ls_R_factor_R_work 0.19054 _refine.ls_R_factor_R_free 0.20644 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.0 _refine.ls_number_reflns_R_free 804 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 22.713 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1HCV' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.165 _refine.pdbx_overall_ESU_R_Free 0.142 _refine.overall_SU_ML 0.092 _refine.overall_SU_B 3.613 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 900 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 1002 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 24.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 929 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.280 1.949 ? 1256 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.508 5.000 ? 118 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 136 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 699 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.200 0.200 ? 337 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.195 0.200 ? 63 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.221 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.146 0.200 ? 18 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.536 1.500 ? 581 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.049 2.000 ? 923 'X-RAY DIFFRACTION' ? r_scbond_it 1.560 3.000 ? 348 'X-RAY DIFFRACTION' ? r_scangle_it 2.561 4.500 ? 333 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.199 _refine_ls_shell.d_res_low 2.256 _refine_ls_shell.number_reflns_R_work 782 _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.234 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1SJX _struct.title 'Three-Dimensional Structure of a Llama VHH Domain OE7 binding the cell wall protein Malf1' _struct.pdbx_descriptor 'immunoglobulin VH domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SJX _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Camelids antibody, heavy chain, dandruff, phage display, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 73 ? LYS A 75 ? ASN A 873 LYS A 875 5 ? 3 HELX_P HELX_P2 2 LYS A 86 ? THR A 90 ? LYS A 886 THR A 890 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 22 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 95 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 822 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 895 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 2 ? SER A 7 ? VAL A 802 SER A 807 A 2 LEU A 18 ? GLY A 26 ? LEU A 818 GLY A 826 A 3 THR A 77 ? MET A 82 ? THR A 877 MET A 882 A 4 PHE A 67 ? ASP A 72 ? PHE A 867 ASP A 872 B 1 GLY A 10 ? GLN A 13 ? GLY A 810 GLN A 813 B 2 THR A 113 ? SER A 118 ? THR A 913 SER A 918 B 3 ALA A 91 ? ASP A 99 ? ALA A 891 ASP A 899 B 4 ILE A 31 ? GLN A 39 ? ILE A 831 GLN A 839 B 5 GLU A 46 ? ILE A 51 ? GLU A 846 ILE A 851 B 6 THR A 57 ? TYR A 59 ? THR A 857 TYR A 859 C 1 GLY A 10 ? GLN A 13 ? GLY A 810 GLN A 813 C 2 THR A 113 ? SER A 118 ? THR A 913 SER A 918 C 3 ALA A 91 ? ASP A 99 ? ALA A 891 ASP A 899 C 4 TYR A 108 ? TRP A 109 ? TYR A 908 TRP A 909 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 7 ? N SER A 807 O SER A 21 ? O SER A 821 A 2 3 N LEU A 18 ? N LEU A 818 O MET A 82 ? O MET A 882 A 3 4 O GLN A 81 ? O GLN A 881 N THR A 68 ? N THR A 868 B 1 2 N GLY A 10 ? N GLY A 810 O THR A 116 ? O THR A 916 B 2 3 O THR A 113 ? O THR A 913 N TYR A 93 ? N TYR A 893 B 3 4 O GLU A 98 ? O GLU A 898 N ASP A 33 ? N ASP A 833 B 4 5 N MET A 34 ? N MET A 834 O ILE A 51 ? O ILE A 851 B 5 6 N ALA A 50 ? N ALA A 850 O LYS A 58 ? O LYS A 858 C 1 2 N GLY A 10 ? N GLY A 810 O THR A 116 ? O THR A 916 C 2 3 O THR A 113 ? O THR A 913 N TYR A 93 ? N TYR A 893 C 3 4 O ALA A 97 ? O ALA A 897 N TYR A 108 ? N TYR A 908 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MPD A 8001' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MPD A 8002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH D . W HOH A 21 . ? 1_555 ? 2 AC1 4 HOH D . W HOH A 71 . ? 1_555 ? 3 AC1 4 ASN A 32 ? ASN A 832 . ? 1_555 ? 4 AC1 4 MET A 34 ? MET A 834 . ? 1_555 ? 5 AC2 7 MET A 34 ? MET A 834 . ? 1_555 ? 6 AC2 7 GLY A 35 ? GLY A 835 . ? 1_555 ? 7 AC2 7 TYR A 37 ? TYR A 837 . ? 1_555 ? 8 AC2 7 LYS A 58 ? LYS A 858 . ? 5_675 ? 9 AC2 7 GLY A 104 ? GLY A 904 . ? 1_555 ? 10 AC2 7 THR A 105 ? THR A 905 . ? 1_555 ? 11 AC2 7 VAL A 106 ? VAL A 906 . ? 1_555 ? # _database_PDB_matrix.entry_id 1SJX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1SJX _atom_sites.fract_transf_matrix[1][1] 0.014005 _atom_sites.fract_transf_matrix[1][2] 0.008086 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016172 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013361 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 801 801 GLN GLN A . n A 1 2 VAL 2 802 802 VAL VAL A . n A 1 3 GLN 3 803 803 GLN GLN A . n A 1 4 LEU 4 804 804 LEU LEU A . n A 1 5 GLN 5 805 805 GLN GLN A . n A 1 6 GLU 6 806 806 GLU GLU A . n A 1 7 SER 7 807 807 SER SER A . n A 1 8 GLY 8 808 808 GLY GLY A . n A 1 9 GLY 9 809 809 GLY GLY A . n A 1 10 GLY 10 810 810 GLY GLY A . n A 1 11 LEU 11 811 811 LEU LEU A . n A 1 12 VAL 12 812 812 VAL VAL A . n A 1 13 GLN 13 813 813 GLN GLN A . n A 1 14 ALA 14 814 814 ALA ALA A . n A 1 15 GLY 15 815 815 GLY GLY A . n A 1 16 GLY 16 816 816 GLY GLY A . n A 1 17 SER 17 817 817 SER SER A . n A 1 18 LEU 18 818 818 LEU LEU A . n A 1 19 ARG 19 819 819 ARG ARG A . n A 1 20 LEU 20 820 820 LEU LEU A . n A 1 21 SER 21 821 821 SER SER A . n A 1 22 CYS 22 822 822 CYS CYS A . n A 1 23 GLN 23 823 823 GLN GLN A . n A 1 24 ALA 24 824 824 ALA ALA A . n A 1 25 SER 25 825 825 SER SER A . n A 1 26 GLY 26 826 826 GLY GLY A . n A 1 27 ASN 27 827 827 ASN ASN A . n A 1 28 ILE 28 828 828 ILE ILE A . n A 1 29 PHE 29 829 829 PHE PHE A . n A 1 30 ARG 30 830 830 ARG ARG A . n A 1 31 ILE 31 831 831 ILE ILE A . n A 1 32 ASN 32 832 832 ASN ASN A . n A 1 33 ASP 33 833 833 ASP ASP A . n A 1 34 MET 34 834 834 MET MET A . n A 1 35 GLY 35 835 835 GLY GLY A . n A 1 36 TRP 36 836 836 TRP TRP A . n A 1 37 TYR 37 837 837 TYR TYR A . n A 1 38 ARG 38 838 838 ARG ARG A . n A 1 39 GLN 39 839 839 GLN GLN A . n A 1 40 ALA 40 840 840 ALA ALA A . n A 1 41 PRO 41 841 841 PRO PRO A . n A 1 42 GLY 42 842 842 GLY GLY A . n A 1 43 THR 43 843 843 THR THR A . n A 1 44 GLN 44 844 844 GLN GLN A . n A 1 45 ARG 45 845 845 ARG ARG A . n A 1 46 GLU 46 846 846 GLU GLU A . n A 1 47 LEU 47 847 847 LEU LEU A . n A 1 48 VAL 48 848 848 VAL VAL A . n A 1 49 ALA 49 849 849 ALA ALA A . n A 1 50 ALA 50 850 850 ALA ALA A . n A 1 51 ILE 51 851 851 ILE ILE A . n A 1 52 THR 52 852 852 THR THR A . n A 1 53 SER 53 853 853 SER SER A . n A 1 54 GLY 54 854 854 GLY GLY A . n A 1 55 GLY 55 855 855 GLY GLY A . n A 1 56 SER 56 856 856 SER SER A . n A 1 57 THR 57 857 857 THR THR A . n A 1 58 LYS 58 858 858 LYS LYS A . n A 1 59 TYR 59 859 859 TYR TYR A . n A 1 60 ALA 60 860 860 ALA ALA A . n A 1 61 ASP 61 861 861 ASP ASP A . n A 1 62 SER 62 862 862 SER SER A . n A 1 63 VAL 63 863 863 VAL VAL A . n A 1 64 LYS 64 864 864 LYS LYS A . n A 1 65 GLY 65 865 865 GLY GLY A . n A 1 66 ARG 66 866 866 ARG ARG A . n A 1 67 PHE 67 867 867 PHE PHE A . n A 1 68 THR 68 868 868 THR THR A . n A 1 69 ILE 69 869 869 ILE ILE A . n A 1 70 SER 70 870 870 SER SER A . n A 1 71 LYS 71 871 871 LYS LYS A . n A 1 72 ASP 72 872 872 ASP ASP A . n A 1 73 ASN 73 873 873 ASN ASN A . n A 1 74 ALA 74 874 874 ALA ALA A . n A 1 75 LYS 75 875 875 LYS LYS A . n A 1 76 ASN 76 876 876 ASN ASN A . n A 1 77 THR 77 877 877 THR THR A . n A 1 78 VAL 78 878 878 VAL VAL A . n A 1 79 TYR 79 879 879 TYR TYR A . n A 1 80 LEU 80 880 880 LEU LEU A . n A 1 81 GLN 81 881 881 GLN GLN A . n A 1 82 MET 82 882 882 MET MET A . n A 1 83 ASN 83 883 883 ASN ASN A . n A 1 84 SER 84 884 884 SER SER A . n A 1 85 LEU 85 885 885 LEU LEU A . n A 1 86 LYS 86 886 886 LYS LYS A . n A 1 87 PRO 87 887 887 PRO PRO A . n A 1 88 GLU 88 888 888 GLU GLU A . n A 1 89 ASP 89 889 889 ASP ASP A . n A 1 90 THR 90 890 890 THR THR A . n A 1 91 ALA 91 891 891 ALA ALA A . n A 1 92 VAL 92 892 892 VAL VAL A . n A 1 93 TYR 93 893 893 TYR TYR A . n A 1 94 TYR 94 894 894 TYR TYR A . n A 1 95 CYS 95 895 895 CYS CYS A . n A 1 96 ALA 96 896 896 ALA ALA A . n A 1 97 ALA 97 897 897 ALA ALA A . n A 1 98 GLU 98 898 898 GLU GLU A . n A 1 99 ASP 99 899 899 ASP ASP A . n A 1 100 ARG 100 900 900 ARG ARG A . n A 1 101 HIS 101 901 901 HIS HIS A . n A 1 102 ARG 102 902 902 ARG ARG A . n A 1 103 ILE 103 903 903 ILE ILE A . n A 1 104 GLY 104 904 904 GLY GLY A . n A 1 105 THR 105 905 905 THR THR A . n A 1 106 VAL 106 906 906 VAL VAL A . n A 1 107 GLY 107 907 907 GLY GLY A . n A 1 108 TYR 108 908 908 TYR TYR A . n A 1 109 TRP 109 909 909 TRP TRP A . n A 1 110 GLY 110 910 910 GLY GLY A . n A 1 111 GLN 111 911 911 GLN GLN A . n A 1 112 GLY 112 912 912 GLY GLY A . n A 1 113 THR 113 913 913 THR THR A . n A 1 114 GLN 114 914 914 GLN GLN A . n A 1 115 VAL 115 915 915 VAL VAL A . n A 1 116 THR 116 916 916 THR THR A . n A 1 117 VAL 117 917 917 VAL VAL A . n A 1 118 SER 118 918 918 SER SER A . n A 1 119 SER 119 919 919 SER SER A . n A 1 120 VAL 120 920 ? ? ? A . n A 1 121 HIS 121 921 ? ? ? A . n A 1 122 HIS 122 922 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD 1 8001 8001 MPD MPD A . C 2 MPD 1 8002 8002 MPD MPD A . D 3 HOH 1 1 1 HOH HOH A W D 3 HOH 2 2 2 HOH HOH A W D 3 HOH 3 3 3 HOH HOH A W D 3 HOH 4 4 4 HOH HOH A W D 3 HOH 5 5 5 HOH HOH A W D 3 HOH 6 6 6 HOH HOH A W D 3 HOH 7 7 7 HOH HOH A W D 3 HOH 8 8 8 HOH HOH A W D 3 HOH 9 9 9 HOH HOH A W D 3 HOH 10 10 10 HOH HOH A W D 3 HOH 11 11 11 HOH HOH A W D 3 HOH 12 12 12 HOH HOH A W D 3 HOH 13 13 13 HOH HOH A W D 3 HOH 14 14 14 HOH HOH A W D 3 HOH 15 15 15 HOH HOH A W D 3 HOH 16 16 16 HOH HOH A W D 3 HOH 17 17 17 HOH HOH A W D 3 HOH 18 18 18 HOH HOH A W D 3 HOH 19 19 19 HOH HOH A W D 3 HOH 20 20 20 HOH HOH A W D 3 HOH 21 21 21 HOH HOH A W D 3 HOH 22 22 22 HOH HOH A W D 3 HOH 23 23 23 HOH HOH A W D 3 HOH 24 24 24 HOH HOH A W D 3 HOH 25 25 25 HOH HOH A W D 3 HOH 26 26 26 HOH HOH A W D 3 HOH 27 27 27 HOH HOH A W D 3 HOH 28 28 28 HOH HOH A W D 3 HOH 29 29 29 HOH HOH A W D 3 HOH 30 30 30 HOH HOH A W D 3 HOH 31 31 31 HOH HOH A W D 3 HOH 32 32 32 HOH HOH A W D 3 HOH 33 33 33 HOH HOH A W D 3 HOH 34 34 34 HOH HOH A W D 3 HOH 35 35 35 HOH HOH A W D 3 HOH 36 36 36 HOH HOH A W D 3 HOH 37 37 37 HOH HOH A W D 3 HOH 38 38 38 HOH HOH A W D 3 HOH 39 39 39 HOH HOH A W D 3 HOH 40 40 40 HOH HOH A W D 3 HOH 41 41 41 HOH HOH A W D 3 HOH 42 42 42 HOH HOH A W D 3 HOH 43 43 43 HOH HOH A W D 3 HOH 44 44 44 HOH HOH A W D 3 HOH 45 45 45 HOH HOH A W D 3 HOH 46 46 46 HOH HOH A W D 3 HOH 47 47 47 HOH HOH A W D 3 HOH 48 48 48 HOH HOH A W D 3 HOH 49 49 49 HOH HOH A W D 3 HOH 50 50 50 HOH HOH A W D 3 HOH 51 51 51 HOH HOH A W D 3 HOH 52 52 52 HOH HOH A W D 3 HOH 53 53 53 HOH HOH A W D 3 HOH 54 54 54 HOH HOH A W D 3 HOH 55 55 55 HOH HOH A W D 3 HOH 56 56 56 HOH HOH A W D 3 HOH 57 57 57 HOH HOH A W D 3 HOH 58 58 58 HOH HOH A W D 3 HOH 59 59 59 HOH HOH A W D 3 HOH 60 60 60 HOH HOH A W D 3 HOH 61 61 61 HOH HOH A W D 3 HOH 62 62 62 HOH HOH A W D 3 HOH 63 64 64 HOH HOH A W D 3 HOH 64 65 65 HOH HOH A W D 3 HOH 65 66 66 HOH HOH A W D 3 HOH 66 67 67 HOH HOH A W D 3 HOH 67 68 68 HOH HOH A W D 3 HOH 68 69 69 HOH HOH A W D 3 HOH 69 70 70 HOH HOH A W D 3 HOH 70 71 71 HOH HOH A W D 3 HOH 71 72 72 HOH HOH A W D 3 HOH 72 73 73 HOH HOH A W D 3 HOH 73 74 74 HOH HOH A W D 3 HOH 74 75 75 HOH HOH A W D 3 HOH 75 76 76 HOH HOH A W D 3 HOH 76 77 77 HOH HOH A W D 3 HOH 77 78 78 HOH HOH A W D 3 HOH 78 79 79 HOH HOH A W D 3 HOH 79 80 80 HOH HOH A W D 3 HOH 80 81 81 HOH HOH A W D 3 HOH 81 83 83 HOH HOH A W D 3 HOH 82 84 84 HOH HOH A W D 3 HOH 83 85 85 HOH HOH A W D 3 HOH 84 86 86 HOH HOH A W D 3 HOH 85 87 87 HOH HOH A W D 3 HOH 86 88 88 HOH HOH A W # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-03-15 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -2.2830 _pdbx_refine_tls.origin_y 49.9400 _pdbx_refine_tls.origin_z 5.4640 _pdbx_refine_tls.T[1][1] 0.0713 _pdbx_refine_tls.T[2][2] 0.0298 _pdbx_refine_tls.T[3][3] 0.0922 _pdbx_refine_tls.T[1][2] -0.0425 _pdbx_refine_tls.T[1][3] -0.0115 _pdbx_refine_tls.T[2][3] -0.0134 _pdbx_refine_tls.L[1][1] 0.9916 _pdbx_refine_tls.L[2][2] 5.4586 _pdbx_refine_tls.L[3][3] 1.5962 _pdbx_refine_tls.L[1][2] 0.3846 _pdbx_refine_tls.L[1][3] 0.5605 _pdbx_refine_tls.L[2][3] 0.3317 _pdbx_refine_tls.S[1][1] -0.0387 _pdbx_refine_tls.S[1][2] 0.0877 _pdbx_refine_tls.S[1][3] -0.0658 _pdbx_refine_tls.S[2][1] -0.2648 _pdbx_refine_tls.S[2][2] 0.1868 _pdbx_refine_tls.S[2][3] -0.0360 _pdbx_refine_tls.S[3][1] 0.0915 _pdbx_refine_tls.S[3][2] -0.0609 _pdbx_refine_tls.S[3][3] -0.1481 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.beg_auth_seq_id 801 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 119 _pdbx_refine_tls_group.end_auth_seq_id 919 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 AMoRE phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The sequence of the protein was not deposited into any sequence database. ; # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 57 _pdbx_validate_symm_contact.PDB_ins_code_1 W _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 81 _pdbx_validate_symm_contact.PDB_ins_code_2 W _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_675 _pdbx_validate_symm_contact.dist 1.85 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 872 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 872 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 872 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.72 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.42 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 832 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -105.39 _pdbx_validate_torsion.psi -110.02 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 920 ? A VAL 120 2 1 Y 1 A HIS 921 ? A HIS 121 3 1 Y 1 A HIS 922 ? A HIS 122 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 3 water HOH #