HEADER ATP SYNTHASE 26-FEB-97 1SKY TITLE CRYSTAL STRUCTURE OF THE NUCLEOTIDE FREE ALPHA3BETA3 SUB-COMPLEX OF TITLE 2 F1-ATPASE FROM THE THERMOPHILIC BACILLUS PS3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: F1-ATPASE; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: F1-ATP SYNTHASE; COMPND 5 EC: 3.6.1.34; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: F1-ATPASE; COMPND 9 CHAIN: E; COMPND 10 SYNONYM: F1-ATP SYNTHASE; COMPND 11 EC: 3.6.1.34; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 3 ORGANISM_TAXID: 2334; SOURCE 4 STRAIN: PS3; SOURCE 5 ORGAN: HEART; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DK8; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIUM; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK ALPHA FOR ALPHA SUBUNIT, PUC118BETA SOURCE 11 FOR BETA SUBUNIT; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: BACILLUS SP.; SOURCE 14 ORGANISM_TAXID: 2334; SOURCE 15 STRAIN: PS3; SOURCE 16 ORGAN: HEART; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: DK8; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIUM; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PKK ALPHA FOR ALPHA SUBUNIT, PUC118BETA SOURCE 22 FOR BETA SUBUNIT KEYWDS ATP SYNTHASE, F1FO ATP SYNTHASE, F1-ATPASE, ALPHA3BETA3 SUBCOMPLEX OF KEYWDS 2 F1-ATPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHIRAKIHARA,A.G.W.LESLIE,J.P.ABRAHAMS,J.E.WALKER,T.UEDA,Y.SEKIMOTO, AUTHOR 2 M.KAMBARA,K.SAIKA,Y.KAGAWA,M.YOSHIDA REVDAT 5 14-FEB-24 1SKY 1 REMARK REVDAT 4 12-MAR-14 1SKY 1 REMARK REVDAT 3 13-JUL-11 1SKY 1 VERSN REVDAT 2 24-FEB-09 1SKY 1 VERSN REVDAT 1 04-MAR-98 1SKY 0 JRNL AUTH Y.SHIRAKIHARA,A.G.LESLIE,J.P.ABRAHAMS,J.E.WALKER,T.UEDA, JRNL AUTH 2 Y.SEKIMOTO,M.KAMBARA,K.SAIKA,Y.KAGAWA,M.YOSHIDA JRNL TITL THE CRYSTAL STRUCTURE OF THE NUCLEOTIDE-FREE ALPHA 3 BETA 3 JRNL TITL 2 SUBCOMPLEX OF F1-ATPASE FROM THE THERMOPHILIC BACILLUS PS3 JRNL TITL 3 IS A SYMMETRIC TRIMER. JRNL REF STRUCTURE V. 5 825 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9261073 JRNL DOI 10.1016/S0969-2126(97)00236-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.SHIRAKIHARA,T.UEDA,Y.SEKIMOTO,M.YOSHIDA,K.SAIKA REMARK 1 TITL X-RAY CRYSTAL ANALYSIS OF ALPHA3BETA3 COMPLEX OF F1-ATPASE REMARK 1 TITL 2 FROM A THERMOPHILIC BACTERIUM PS3 REMARK 1 REF PHOTON FACTORY ACTIVITY V. 12 346 1994 REMARK 1 REF 2 REPORT REMARK 1 REFN ISSN 0912-1803 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : DONE BY FREERFACMTZ REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 905 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.12 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2232 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 98 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7289 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.590 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.65 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.460 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SKY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-94 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-18B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR + MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109106 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, X-PLOR REMARK 200 STARTING MODEL: MITOCHODRIAL F1-ATPASE REMARK 200 REMARK 200 REMARK: J.P. ABRAHAMS, A.G.W. LESLIE, R. LUTTER, J.E. WALKER REMARK 200 STRUCTURE AT 2.8A RESOLUTION OF F1-ATPASE FROM BOVINE HEART REMARK 200 MITOCHONDRIA, NATURE 370,621-628, (1994) REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP WITH 9-11% PEG20000, 0.12 REMARK 280 M SODIUM SULFATE AT PH8.0, EQUILIBRATED AGAINST PROTEIN FREE REMARK 280 RESERVOIR WITH HIGHER PEG SOLUTION BY 2%. KEPT AT 15DEG., VAPOR REMARK 280 DIFFUSION - HANGING DROP, TEMPERATURE 288K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 79.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 79.75000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 79.75000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 79.75000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 79.75000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 79.75000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 79.75000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 79.75000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 79.75000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 79.75000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 79.75000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 79.75000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 79.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 25010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 103520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ALPHA3 BETA3 SUBCOMPLEX OF F1-ATPASE COMPRISES THREE ALPHA REMARK 400 AND THREE BETA SUBUNITS. BECAUSE THE SUBCOMPLEX IS REMARK 400 SYMMETRICAL, ONE ALPHA (CHAIN B) AND ONE BETA (CHAIN E) REMARK 400 SUBUNITS ARE GIVEN. THE ENTIRE SUBCOMPLEX CAN BE FORMED REMARK 400 USING THE TRANSFORMATIONS GIVEN IN REMARK 350. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ILE B 3 REMARK 465 ARG B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 ILE B 8 REMARK 465 SER B 9 REMARK 465 ALA B 10 REMARK 465 LEU B 11 REMARK 465 ILE B 12 REMARK 465 LYS B 13 REMARK 465 GLN B 14 REMARK 465 GLN B 15 REMARK 465 ILE B 16 REMARK 465 GLU B 17 REMARK 465 ASN B 18 REMARK 465 TYR B 19 REMARK 465 GLU B 20 REMARK 465 ALA B 394 REMARK 465 GLY B 399 REMARK 465 LEU B 402 REMARK 465 VAL E 471 REMARK 465 GLU E 472 REMARK 465 VAL E 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 365 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 22 -76.00 -134.92 REMARK 500 GLN B 24 -171.34 -53.28 REMARK 500 VAL B 25 -26.52 -34.45 REMARK 500 ASN B 57 -5.22 -59.52 REMARK 500 ALA B 58 17.05 88.98 REMARK 500 LEU B 76 46.37 -98.89 REMARK 500 HIS B 143 -39.57 -144.47 REMARK 500 LYS B 151 -67.81 -28.90 REMARK 500 GLN B 172 33.27 78.97 REMARK 500 PRO B 218 6.24 -66.28 REMARK 500 TYR B 248 -70.24 -50.19 REMARK 500 MET B 252 35.55 -141.31 REMARK 500 ASP B 262 100.89 92.94 REMARK 500 ALA B 285 -16.77 73.37 REMARK 500 PRO B 287 166.76 -48.78 REMARK 500 SER B 327 -13.61 -44.86 REMARK 500 TYR B 329 -77.22 -53.07 REMARK 500 ASP B 339 43.35 -84.69 REMARK 500 VAL B 353 88.12 -151.15 REMARK 500 ALA B 356 18.31 -61.88 REMARK 500 ASN B 358 71.69 -101.99 REMARK 500 ALA B 359 -63.46 -21.94 REMARK 500 ALA B 369 8.65 -65.03 REMARK 500 LYS B 373 -38.42 -38.50 REMARK 500 ALA B 411 -90.62 -53.02 REMARK 500 LEU B 424 150.04 -48.19 REMARK 500 HIS B 425 8.51 58.41 REMARK 500 PHE B 444 12.89 -58.93 REMARK 500 GLN B 466 -75.18 -100.11 REMARK 500 ARG B 476 -88.06 -61.85 REMARK 500 PRO B 482 -122.45 -73.37 REMARK 500 PHE B 498 39.91 -90.58 REMARK 500 VAL B 499 5.69 -166.19 REMARK 500 THR E 2 41.48 -80.72 REMARK 500 LEU E 23 99.27 37.70 REMARK 500 TYR E 27 -5.26 91.99 REMARK 500 GLU E 106 26.13 -76.42 REMARK 500 LYS E 140 -70.74 -43.17 REMARK 500 LEU E 144 -67.65 -96.20 REMARK 500 ALA E 146 62.92 -153.49 REMARK 500 GLN E 177 -86.71 -85.22 REMARK 500 GLU E 178 2.61 -60.50 REMARK 500 GLU E 190 65.53 -163.58 REMARK 500 ARG E 191 97.42 71.56 REMARK 500 GLN E 217 -179.03 -65.03 REMARK 500 ASN E 253 79.98 65.53 REMARK 500 SER E 273 -155.93 -115.57 REMARK 500 LYS E 297 -80.47 -79.03 REMARK 500 PRO E 309 84.38 -66.94 REMARK 500 ALA E 310 83.04 55.47 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: THE CARBOXYLATE GROUP OF THE GLUTAMIC ACID REMARK 800 RESIDUE IS BELIEVED TO ACTIVATE A WATER MOLECULE FOR INLINE REMARK 800 ATTACK ON THE GAMMA PHOSPHATE DURING ATP HYDROLYSIS. THE REMARK 800 ARGININE RESIDUE (WHICH IS LOCATED ON AN ADJACENT ALPHA SUBUNIT) REMARK 800 COULD HELP TO STABILIZE THE NEGATIVE CHARGE THAT DEVELOPS ON THE REMARK 800 TERMINAL PHOSPHATE IN THE PUTATIVE PENTACOORDINATED TRANSITION REMARK 800 STATE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 474 DBREF 1SKY B 1 502 UNP P09219 ATPA_BACP3 1 502 DBREF 1SKY E 1 473 UNP P07677 ATPB_BACP3 1 473 SEQRES 1 B 502 MET SER ILE ARG ALA GLU GLU ILE SER ALA LEU ILE LYS SEQRES 2 B 502 GLN GLN ILE GLU ASN TYR GLU SER GLN ILE GLN VAL SER SEQRES 3 B 502 ASP VAL GLY THR VAL ILE GLN VAL GLY ASP GLY ILE ALA SEQRES 4 B 502 ARG ALA HIS GLY LEU ASP ASN VAL MET SER GLY GLU ALA SEQRES 5 B 502 VAL GLU PHE ALA ASN ALA VAL MET GLY MET ALA LEU ASN SEQRES 6 B 502 LEU GLU GLU ASN ASN VAL GLY ILE VAL ILE LEU GLY PRO SEQRES 7 B 502 TYR THR GLY ILE LYS GLU GLY ASP GLU VAL ARG ARG THR SEQRES 8 B 502 GLY ARG ILE MET GLU VAL PRO VAL GLY GLU THR LEU ILE SEQRES 9 B 502 GLY ARG VAL VAL ASN PRO LEU GLY GLN PRO VAL ASP GLY SEQRES 10 B 502 LEU GLY PRO VAL GLU THR THR GLU THR ARG PRO ILE GLU SEQRES 11 B 502 SER ARG ALA PRO GLY VAL MET ASP ARG ARG SER VAL HIS SEQRES 12 B 502 GLU PRO LEU GLN THR GLY ILE LYS ALA ILE ASP ALA LEU SEQRES 13 B 502 VAL PRO ILE GLY ARG GLY GLN ARG GLU LEU ILE ILE GLY SEQRES 14 B 502 ASP ARG GLN THR GLY LYS THR SER VAL ALA ILE ASP THR SEQRES 15 B 502 ILE ILE ASN GLN LYS ASP GLN ASN MET ILE CYS ILE TYR SEQRES 16 B 502 VAL ALA ILE GLY GLN LYS GLU SER THR VAL ALA THR VAL SEQRES 17 B 502 VAL GLU THR LEU ALA LYS HIS GLY ALA PRO ASP TYR THR SEQRES 18 B 502 ILE VAL VAL THR ALA SER ALA SER GLN PRO ALA PRO LEU SEQRES 19 B 502 LEU PHE LEU ALA PRO TYR ALA GLY VAL ALA MET GLY GLU SEQRES 20 B 502 TYR PHE MET ILE MET GLY LYS HIS VAL LEU VAL VAL ILE SEQRES 21 B 502 ASP ASP LEU SER LYS GLN ALA ALA ALA TYR ARG GLN LEU SEQRES 22 B 502 SER LEU LEU LEU ARG ARG PRO PRO GLY ARG GLU ALA TYR SEQRES 23 B 502 PRO GLY ASP ILE PHE TYR LEU HIS SER ARG LEU LEU GLU SEQRES 24 B 502 ARG ALA ALA LYS LEU SER ASP ALA LYS GLY GLY GLY SER SEQRES 25 B 502 LEU THR ALA LEU PRO PHE VAL GLU THR GLN ALA GLY ASP SEQRES 26 B 502 ILE SER ALA TYR ILE PRO THR ASN VAL ILE SER ILE THR SEQRES 27 B 502 ASP GLY GLN ILE PHE LEU GLN SER ASP LEU PHE PHE SER SEQRES 28 B 502 GLY VAL ARG PRO ALA ILE ASN ALA GLY LEU SER VAL SER SEQRES 29 B 502 ARG VAL GLY GLY ALA ALA GLN ILE LYS ALA MET LYS LYS SEQRES 30 B 502 VAL ALA GLY THR LEU ARG LEU ASP LEU ALA ALA TYR ARG SEQRES 31 B 502 GLU LEU GLU ALA PHE ALA GLN PHE GLY SER ASP LEU ASP SEQRES 32 B 502 LYS ALA THR GLN ALA ASN VAL ALA ARG GLY ALA ARG THR SEQRES 33 B 502 VAL GLU VAL LEU LYS GLN ASP LEU HIS GLN PRO ILE PRO SEQRES 34 B 502 VAL GLU LYS GLN VAL LEU ILE ILE TYR ALA LEU THR ARG SEQRES 35 B 502 GLY PHE LEU ASP ASP ILE PRO VAL GLU ASP VAL ARG ARG SEQRES 36 B 502 PHE GLU LYS GLU PHE TYR LEU TRP LEU ASP GLN ASN GLY SEQRES 37 B 502 GLN HIS LEU LEU GLU HIS ILE ARG THR THR LYS ASP LEU SEQRES 38 B 502 PRO ASN GLU ASP ASP LEU ASN GLN ALA ILE GLU ALA PHE SEQRES 39 B 502 LYS LYS THR PHE VAL VAL SER GLN SEQRES 1 E 473 MET THR ARG GLY ARG VAL ILE GLN VAL MET GLY PRO VAL SEQRES 2 E 473 VAL ASP VAL LYS PHE GLU ASN GLY HIS LEU PRO ALA ILE SEQRES 3 E 473 TYR ASN ALA LEU LYS ILE GLN HIS LYS ALA ARG ASN GLU SEQRES 4 E 473 ASN GLU VAL ASP ILE ASP LEU THR LEU GLU VAL ALA LEU SEQRES 5 E 473 HIS LEU GLY ASP ASP THR VAL ARG THR ILE ALA MET ALA SEQRES 6 E 473 SER THR ASP GLY LEU ILE ARG GLY MET GLU VAL ILE ASP SEQRES 7 E 473 THR GLY ALA PRO ILE SER VAL PRO VAL GLY GLN VAL THR SEQRES 8 E 473 LEU GLY ARG VAL PHE ASN VAL LEU GLY GLU PRO ILE ASP SEQRES 9 E 473 LEU GLU GLY ASP ILE PRO ALA ASP ALA ARG ARG ASP PRO SEQRES 10 E 473 ILE HIS ARG PRO ALA PRO LYS PHE GLU GLU LEU ALA THR SEQRES 11 E 473 GLU VAL GLU ILE LEU GLU THR GLY ILE LYS VAL VAL ASP SEQRES 12 E 473 LEU LEU ALA PRO TYR ILE LYS GLY GLY LYS ILE GLY LEU SEQRES 13 E 473 PHE GLY GLY ALA GLY VAL GLY LYS THR VAL LEU ILE GLN SEQRES 14 E 473 GLU LEU ILE HIS ASN ILE ALA GLN GLU HIS GLY GLY ILE SEQRES 15 E 473 SER VAL PHE ALA GLY VAL GLY GLU ARG THR ARG GLU GLY SEQRES 16 E 473 ASN ASP LEU TYR HIS GLU MET LYS ASP SER GLY VAL ILE SEQRES 17 E 473 SER LYS THR ALA MET VAL PHE GLY GLN MET ASN GLU PRO SEQRES 18 E 473 PRO GLY ALA ARG MET ARG VAL ALA LEU THR GLY LEU THR SEQRES 19 E 473 MET ALA GLU TYR PHE ARG ASP GLU GLN GLY GLN ASP GLY SEQRES 20 E 473 LEU LEU PHE ILE ASP ASN ILE PHE ARG PHE THR GLN ALA SEQRES 21 E 473 GLY SER GLU VAL SER ALA LEU LEU GLY ARG MET PRO SER SEQRES 22 E 473 ALA ILE GLY TYR GLN PRO THR LEU ALA THR GLU MET GLY SEQRES 23 E 473 GLN LEU GLN GLU ARG ILE THR SER THR ALA LYS GLY SER SEQRES 24 E 473 ILE THR SER ILE GLN ALA ILE TYR VAL PRO ALA ASP ASP SEQRES 25 E 473 TYR THR ASP PRO ALA PRO ALA THR THR PHE SER HIS LEU SEQRES 26 E 473 ASP ALA THR THR ASN LEU GLU ARG LYS LEU ALA GLU MET SEQRES 27 E 473 GLY ILE TYR PRO ALA VAL ASP PRO LEU VAL SER THR SER SEQRES 28 E 473 ARG ALA LEU ALA PRO GLU ILE VAL GLY GLU GLU HIS TYR SEQRES 29 E 473 GLN VAL ALA ARG LYS VAL GLN GLN THR LEU GLU ARG TYR SEQRES 30 E 473 LYS GLU LEU GLN ASP ILE ILE ALA ILE LEU GLY MET ASP SEQRES 31 E 473 GLU LEU SER ASP GLU ASP LYS LEU VAL VAL HIS ARG ALA SEQRES 32 E 473 ARG ARG ILE GLN PHE PHE LEU SER GLN ASN PHE HIS VAL SEQRES 33 E 473 ALA GLU GLN PHE THR GLY GLN PRO GLY SER TYR VAL PRO SEQRES 34 E 473 VAL LYS GLU THR VAL ARG GLY PHE LYS GLU ILE LEU GLU SEQRES 35 E 473 GLY LYS TYR ASP HIS LEU PRO GLU ASP ARG PHE ARG LEU SEQRES 36 E 473 VAL GLY ARG ILE GLU GLU VAL VAL GLU LYS ALA LYS ALA SEQRES 37 E 473 MET GLY VAL GLU VAL HET SO4 B 503 5 HET SO4 E 474 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) HELIX 1 1 VAL B 25 ASP B 27 5 3 HELIX 2 2 LYS B 151 LEU B 156 1 6 HELIX 3 3 LYS B 175 GLN B 186 1 12 HELIX 4 4 GLU B 202 LYS B 214 1 13 HELIX 5 5 ALA B 232 MET B 252 1 21 HELIX 6 6 LEU B 263 LEU B 277 1 15 HELIX 7 7 ARG B 283 ALA B 285 5 3 HELIX 8 8 ILE B 290 ARG B 300 1 11 HELIX 9 9 ASP B 306 LYS B 308 5 3 HELIX 10 10 GLN B 322 GLY B 324 5 3 HELIX 11 11 TYR B 329 ILE B 335 1 7 HELIX 12 12 SER B 346 GLY B 352 1 7 HELIX 13 13 LYS B 373 LEU B 392 1 20 HELIX 14 14 LYS B 404 LEU B 420 1 17 HELIX 15 15 VAL B 430 THR B 441 1 12 HELIX 16 16 VAL B 450 HIS B 470 5 21 HELIX 17 17 LEU B 472 THR B 478 1 7 HELIX 18 18 ASN B 483 VAL B 499 1 17 HELIX 19 19 GLN E 89 THR E 91 5 3 HELIX 20 20 PHE E 125 GLU E 127 5 3 HELIX 21 21 LYS E 140 LEU E 145 1 6 HELIX 22 22 LYS E 164 GLU E 178 1 15 HELIX 23 23 THR E 192 ASP E 204 1 13 HELIX 24 24 VAL E 207 LYS E 210 5 4 HELIX 25 25 PRO E 222 GLU E 242 1 21 HELIX 26 26 ILE E 254 LEU E 268 5 15 HELIX 27 27 ALA E 274 GLY E 276 5 3 HELIX 28 28 LEU E 281 ARG E 291 1 11 HELIX 29 29 PRO E 309 ASP E 311 5 3 HELIX 30 30 PRO E 316 HIS E 324 1 9 HELIX 31 31 LEU E 335 MET E 338 1 4 HELIX 32 32 PRO E 356 LEU E 387 1 32 HELIX 33 33 GLU E 395 PHE E 409 1 15 HELIX 34 34 GLU E 418 THR E 421 1 4 HELIX 35 35 VAL E 430 LEU E 441 1 12 HELIX 36 36 GLU E 450 ARG E 452 5 3 HELIX 37 37 GLU E 460 ALA E 466 1 7 SHEET 1 A 7 GLU B 87 ARG B 89 0 SHEET 2 A 7 VAL B 28 GLY B 35 -1 N GLY B 29 O VAL B 88 SHEET 3 A 7 ILE B 38 GLY B 43 -1 N HIS B 42 O THR B 30 SHEET 4 A 7 ASN B 70 ILE B 75 -1 N ILE B 73 O ALA B 39 SHEET 5 A 7 MET B 60 GLU B 67 -1 N GLU B 67 O ASN B 70 SHEET 6 A 7 GLU B 51 PHE B 55 -1 N VAL B 53 O GLY B 61 SHEET 7 A 7 VAL B 88 ILE B 94 -1 N ARG B 93 O ALA B 52 SHEET 1 B 2 GLU B 96 PRO B 98 0 SHEET 2 B 2 THR B 126 PRO B 128 -1 N ARG B 127 O VAL B 97 SHEET 1 C 5 VAL B 107 ASN B 109 0 SHEET 2 C 5 THR B 221 ALA B 226 1 N VAL B 223 O VAL B 108 SHEET 3 C 5 ILE B 192 ILE B 198 1 N CYS B 193 O ILE B 222 SHEET 4 C 5 HIS B 255 ASP B 261 1 N LEU B 257 O ILE B 192 SHEET 5 C 5 SER B 312 PRO B 317 1 N SER B 312 O VAL B 256 SHEET 1 D 3 GLN B 341 LEU B 344 0 SHEET 2 D 3 LEU B 166 GLY B 169 1 N LEU B 166 O ILE B 342 SHEET 3 D 3 PHE B 318 GLU B 320 1 N VAL B 319 O ILE B 167 SHEET 1 E 6 GLU E 75 ILE E 77 0 SHEET 2 E 6 ARG E 3 MET E 10 -1 N GLY E 4 O VAL E 76 SHEET 3 E 6 VAL E 13 PHE E 18 -1 N LYS E 17 O ARG E 5 SHEET 4 E 6 THR E 58 ALA E 63 -1 N THR E 61 O VAL E 14 SHEET 5 E 6 ILE E 44 HIS E 53 -1 N LEU E 52 O ARG E 60 SHEET 6 E 6 ALA E 29 HIS E 34 -1 N HIS E 34 O ILE E 44 SHEET 1 F 2 SER E 84 PRO E 86 0 SHEET 2 F 2 ARG E 115 PRO E 117 -1 N ASP E 116 O VAL E 85 SHEET 1 G 6 ALA E 327 ASN E 330 0 SHEET 2 G 6 LYS E 153 PHE E 157 1 N GLY E 155 O ALA E 327 SHEET 3 G 6 SER E 299 ALA E 305 1 N SER E 302 O ILE E 154 SHEET 4 G 6 ASP E 246 ASP E 252 1 N GLY E 247 O SER E 299 SHEET 5 G 6 SER E 183 VAL E 188 1 N VAL E 184 O LEU E 248 SHEET 6 G 6 THR E 211 GLY E 216 1 N ALA E 212 O SER E 183 CISPEP 1 ARG B 354 PRO B 355 0 0.32 CISPEP 2 TYR E 341 PRO E 342 0 1.20 SITE 1 CAT 1 GLU E 190 SITE 1 AC1 6 ASP B 170 GLN B 172 THR B 173 GLY B 174 SITE 2 AC1 6 LYS B 175 THR B 176 SITE 1 AC2 7 GLY E 159 ALA E 160 GLY E 161 VAL E 162 SITE 2 AC2 7 GLY E 163 LYS E 164 THR E 165 CRYST1 159.500 159.500 159.500 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006270 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006270 0.00000