data_1SM5 # _entry.id 1SM5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1SM5 pdb_00001sm5 10.2210/pdb1sm5/pdb NDB UD0053 ? ? RCSB RCSB021821 ? ? WWPDB D_1000021821 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-25 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2004-05-25 _pdbx_database_PDB_obs_spr.pdb_id 1SM5 _pdbx_database_PDB_obs_spr.replace_pdb_id 1MV7 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SM5 _pdbx_database_status.recvd_initial_deposition_date 2004-03-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, H.' 1 'Zhang, K.' 2 'Ren, Y.' 3 'Nadji, S.' 4 'Sinha, N.' 5 'Taylor, J.-S.' 6 'Kang, C.' 7 # _citation.id primary _citation.title 'Crystal Structure of a DNA Decamer Containing a Thymine-dimer' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 99 _citation.page_first 15965 _citation.page_last 15970 _citation.year 2002 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12456887 _citation.pdbx_database_id_DOI 10.1073/pnas.242422699 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Park, H.' 1 ? primary 'Zhang, K.' 2 ? primary 'Ren, Y.' 3 ? primary 'Nadji, S.' 4 ? primary 'Sinha, N.' 5 ? primary 'Taylor, J.-S.' 6 ? primary 'Kang, C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3'" 3164.742 2 ? ? ? ? 2 polymer syn "5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3'" 3053.031 2 ? ? ? ? 3 water nat water 18.015 52 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(BRU)(DT)(DA)(DA)(DT)(BRU)(DC)(DG)' GCUTAATUCG A,C ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DA)(DT)(DT)(DA)(DA)(DG)(DC)' CGAATTAAGC B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 BRU n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 BRU n 1 9 DC n 1 10 DG n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DT n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DG n 2 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 BRU 3 3 3 BRU U A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 BRU 8 8 8 BRU U A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n B 2 1 DC 1 1 1 DC C B . n B 2 2 DG 2 2 2 DG G B . n B 2 3 DA 3 3 3 DA A B . n B 2 4 DA 4 4 4 DA A B . n B 2 5 DT 5 5 5 DT T B . n B 2 6 DT 6 6 6 DT T B . n B 2 7 DA 7 7 7 DA A B . n B 2 8 DA 8 8 8 DA A B . n B 2 9 DG 9 9 9 DG G B . n B 2 10 DC 10 10 10 DC C B . n C 1 1 DG 1 1 1 DG G C . n C 1 2 DC 2 2 2 DC C C . n C 1 3 BRU 3 3 3 BRU U C . n C 1 4 DT 4 4 4 DT T C . n C 1 5 DA 5 5 5 DA A C . n C 1 6 DA 6 6 6 DA A C . n C 1 7 DT 7 7 7 DT T C . n C 1 8 BRU 8 8 8 BRU U C . n C 1 9 DC 9 9 9 DC C C . n C 1 10 DG 10 10 10 DG G C . n D 2 1 DC 1 1 1 DC C D . n D 2 2 DG 2 2 2 DG G D . n D 2 3 DA 3 3 3 DA A D . n D 2 4 DA 4 4 4 DA A D . n D 2 5 DT 5 5 5 DT T D . n D 2 6 DT 6 6 6 DT T D . n D 2 7 DA 7 7 7 DA A D . n D 2 8 DA 8 8 8 DA A D . n D 2 9 DG 9 9 9 DG G D . n D 2 10 DC 10 10 10 DC C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 206 206 HOH HOH A . E 3 HOH 2 209 209 HOH HOH A . E 3 HOH 3 220 220 HOH HOH A . E 3 HOH 4 222 222 HOH HOH A . E 3 HOH 5 223 223 HOH HOH A . E 3 HOH 6 224 224 HOH HOH A . E 3 HOH 7 229 229 HOH HOH A . E 3 HOH 8 230 230 HOH HOH A . E 3 HOH 9 233 233 HOH HOH A . E 3 HOH 10 235 235 HOH HOH A . E 3 HOH 11 241 241 HOH HOH A . E 3 HOH 12 242 242 HOH HOH A . E 3 HOH 13 245 245 HOH HOH A . E 3 HOH 14 247 247 HOH HOH A . E 3 HOH 15 250 250 HOH HOH A . E 3 HOH 16 252 252 HOH HOH A . F 3 HOH 1 201 201 HOH HOH B . F 3 HOH 2 203 203 HOH HOH B . F 3 HOH 3 208 208 HOH HOH B . F 3 HOH 4 210 210 HOH HOH B . F 3 HOH 5 214 214 HOH HOH B . F 3 HOH 6 225 225 HOH HOH B . F 3 HOH 7 228 228 HOH HOH B . F 3 HOH 8 234 234 HOH HOH B . F 3 HOH 9 236 236 HOH HOH B . F 3 HOH 10 237 237 HOH HOH B . F 3 HOH 11 239 239 HOH HOH B . G 3 HOH 1 207 207 HOH HOH C . G 3 HOH 2 211 211 HOH HOH C . G 3 HOH 3 212 212 HOH HOH C . G 3 HOH 4 213 213 HOH HOH C . G 3 HOH 5 215 215 HOH HOH C . G 3 HOH 6 216 216 HOH HOH C . G 3 HOH 7 217 217 HOH HOH C . G 3 HOH 8 218 218 HOH HOH C . G 3 HOH 9 226 226 HOH HOH C . G 3 HOH 10 232 232 HOH HOH C . G 3 HOH 11 244 244 HOH HOH C . H 3 HOH 1 202 202 HOH HOH D . H 3 HOH 2 204 204 HOH HOH D . H 3 HOH 3 205 205 HOH HOH D . H 3 HOH 4 219 219 HOH HOH D . H 3 HOH 5 221 221 HOH HOH D . H 3 HOH 6 227 227 HOH HOH D . H 3 HOH 7 231 231 HOH HOH D . H 3 HOH 8 238 238 HOH HOH D . H 3 HOH 9 240 240 HOH HOH D . H 3 HOH 10 243 243 HOH HOH D . H 3 HOH 11 246 246 HOH HOH D . H 3 HOH 12 248 248 HOH HOH D . H 3 HOH 13 249 249 HOH HOH D . H 3 HOH 14 251 251 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 X-PLOR refinement 3.851 ? 4 # _cell.entry_id 1SM5 _cell.length_a 24.5 _cell.length_b 53.85 _cell.length_c 75.33 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.entry_id 1SM5 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? # _exptl.entry_id 1SM5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.22 _exptl_crystal.description ? _exptl_crystal.density_Matthews 1.93 # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'MgCl2, HEPES-Na, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 HEPES-Na ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 2 MgCl2 ? ? ? 1 5 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2001-12-03 _diffrn_detector.details 'double crystal monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9205 1.0 2 0.8434 1.0 3 0.9207 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9205, 0.8434, 0.9207' # _reflns.entry_id 1SM5 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 50 _reflns.number_all 79490 _reflns.number_obs 7865 _reflns.percent_possible_obs 97.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1SM5 _refine.ls_d_res_high 2 _refine.ls_d_res_low 10 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 6819 _refine.ls_number_reflns_obs 6447 _refine.ls_number_reflns_R_free 372 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.254 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 5 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 860 _refine_hist.d_res_high 2 _refine_hist.d_res_low 10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_angle_deg 1.35 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1SM5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1SM5 _struct.title 'Crystal Structure of a DNA Decamer Containing a Thymine-dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SM5 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'UV-damaged DNA, Thymine dimer, DNA decamer, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1SM5 1SM5 ? ? ? 2 2 PDB 1SM5 1SM5 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1SM5 A 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 2 2 1SM5 B 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 3 1 1SM5 C 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 4 2 1SM5 D 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 2 "O3'" ? ? ? 1_555 A BRU 3 P ? ? A DC 2 A BRU 3 1_555 ? ? ? ? ? ? ? 1.582 ? ? covale2 covale both ? A BRU 3 "O3'" ? ? ? 1_555 A DT 4 P ? ? A BRU 3 A DT 4 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale3 covale both ? A DT 7 "O3'" ? ? ? 1_555 A BRU 8 P ? ? A DT 7 A BRU 8 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale4 covale both ? A BRU 8 "O3'" ? ? ? 1_555 A DC 9 P ? ? A BRU 8 A DC 9 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale5 covale none ? B DT 5 C5 ? ? ? 1_555 B DT 6 C5 ? ? B DT 5 B DT 6 1_555 ? ? ? ? ? ? ? 1.548 ? ? covale6 covale none ? B DT 5 C6 ? ? ? 1_555 B DT 6 C6 ? ? B DT 5 B DT 6 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale7 covale both ? C DC 2 "O3'" ? ? ? 1_555 C BRU 3 P ? ? C DC 2 C BRU 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale8 covale both ? C BRU 3 "O3'" ? ? ? 1_555 C DT 4 P ? ? C BRU 3 C DT 4 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale9 covale both ? C DT 7 "O3'" ? ? ? 1_555 C BRU 8 P ? ? C DT 7 C BRU 8 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale10 covale both ? C BRU 8 "O3'" ? ? ? 1_555 C DC 9 P ? ? C BRU 8 C DC 9 1_555 ? ? ? ? ? ? ? 1.574 ? ? covale11 covale none ? D DT 5 C5 ? ? ? 1_555 D DT 6 C5 ? ? D DT 5 D DT 6 1_555 ? ? ? ? ? ? ? 1.553 ? ? covale12 covale none ? D DT 5 C6 ? ? ? 1_555 D DT 6 C6 ? ? D DT 5 D DT 6 1_555 ? ? ? ? ? ? ? 1.592 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A BRU 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? A BRU 3 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A BRU 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? A BRU 3 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 5 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 5 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 7 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 7 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A BRU 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A BRU 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A BRU 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A BRU 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 1 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 1 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 1 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 2 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C BRU 3 N3 ? ? ? 1_555 D DA 8 N1 ? ? C BRU 3 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C BRU 3 O4 ? ? ? 1_555 D DA 8 N6 ? ? C BRU 3 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 4 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 4 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 5 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 5 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 6 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 6 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 7 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 7 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C BRU 8 N3 ? ? ? 1_555 D DA 3 N1 ? ? C BRU 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C BRU 8 O4 ? ? ? 1_555 D DA 3 N6 ? ? C BRU 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 10 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.377 1.446 -0.069 0.010 N 2 1 "O3'" A DG 10 ? ? "C3'" A DG 10 ? ? 1.373 1.419 -0.046 0.006 N 3 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.264 1.305 -0.041 0.006 N 4 1 "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 1.449 1.521 -0.072 0.010 N 5 1 N1 B DC 1 ? ? C2 B DC 1 ? ? 1.311 1.397 -0.086 0.010 N 6 1 C2 B DC 1 ? ? N3 B DC 1 ? ? 1.300 1.353 -0.053 0.008 N 7 1 "O4'" B DG 2 ? ? "C4'" B DG 2 ? ? 1.385 1.446 -0.061 0.010 N 8 1 N1 B DG 2 ? ? C2 B DG 2 ? ? 1.318 1.373 -0.055 0.008 N 9 1 N3 B DG 2 ? ? C4 B DG 2 ? ? 1.307 1.350 -0.043 0.007 N 10 1 C4 B DG 2 ? ? C5 B DG 2 ? ? 1.334 1.379 -0.045 0.007 N 11 1 C6 B DG 2 ? ? N1 B DG 2 ? ? 1.345 1.391 -0.046 0.007 N 12 1 "C5'" B DA 3 ? ? "C4'" B DA 3 ? ? 1.426 1.509 -0.083 0.011 N 13 1 C4 B DA 3 ? ? C5 B DA 3 ? ? 1.338 1.383 -0.045 0.007 N 14 1 C6 B DA 3 ? ? N1 B DA 3 ? ? 1.286 1.351 -0.065 0.007 N 15 1 N9 B DA 3 ? ? C4 B DA 3 ? ? 1.419 1.374 0.045 0.006 N 16 1 C5 B DT 5 ? ? C6 B DT 5 ? ? 1.395 1.339 0.056 0.007 N 17 1 C6 B DT 5 ? ? N1 B DT 5 ? ? 1.421 1.378 0.043 0.007 N 18 1 C5 B DT 5 ? ? C7 B DT 5 ? ? 1.772 1.496 0.276 0.006 N 19 1 C6 B DT 6 ? ? N1 B DT 6 ? ? 1.451 1.378 0.073 0.007 N 20 1 C5 B DT 6 ? ? C7 B DT 6 ? ? 1.597 1.496 0.101 0.006 N 21 1 "C2'" B DA 8 ? ? "C1'" B DA 8 ? ? 1.446 1.518 -0.072 0.010 N 22 1 C4 B DA 8 ? ? C5 B DA 8 ? ? 1.340 1.383 -0.043 0.007 N 23 1 C6 B DA 8 ? ? N1 B DA 8 ? ? 1.297 1.351 -0.054 0.007 N 24 1 "O3'" C DG 1 ? ? "C3'" C DG 1 ? ? 1.383 1.419 -0.036 0.006 N 25 1 "C4'" C DG 10 ? ? "C3'" C DG 10 ? ? 1.431 1.521 -0.090 0.010 N 26 1 "C4'" D DG 2 ? ? "C3'" D DG 2 ? ? 1.451 1.521 -0.070 0.010 N 27 1 "C2'" D DG 2 ? ? "C1'" D DG 2 ? ? 1.443 1.518 -0.075 0.010 N 28 1 C5 D DT 5 ? ? C6 D DT 5 ? ? 1.398 1.339 0.059 0.007 N 29 1 C6 D DT 5 ? ? N1 D DT 5 ? ? 1.421 1.378 0.043 0.007 N 30 1 C5 D DT 5 ? ? C7 D DT 5 ? ? 1.770 1.496 0.274 0.006 N 31 1 C4 D DT 6 ? ? C5 D DT 6 ? ? 1.508 1.445 0.063 0.009 N 32 1 C6 D DT 6 ? ? N1 D DT 6 ? ? 1.443 1.378 0.065 0.007 N 33 1 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.597 1.496 0.101 0.006 N 34 1 "C3'" D DA 8 ? ? "C2'" D DA 8 ? ? 1.464 1.516 -0.052 0.008 N 35 1 C8 D DG 9 ? ? N9 D DG 9 ? ? 1.312 1.374 -0.062 0.007 N 36 1 N1 D DC 10 ? ? C6 D DC 10 ? ? 1.310 1.367 -0.057 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.35 108.30 4.05 0.30 N 2 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.44 113.10 3.34 0.50 N 3 1 C8 A DG 1 ? ? N9 A DG 1 ? ? C4 A DG 1 ? ? 102.54 106.40 -3.86 0.40 N 4 1 N9 A DG 1 ? ? C4 A DG 1 ? ? C5 A DG 1 ? ? 108.08 105.40 2.68 0.40 N 5 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.29 108.30 2.99 0.30 N 6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 100.59 105.90 -5.31 0.80 N 7 1 C4 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 123.67 119.00 4.67 0.60 N 8 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 115.53 122.90 -7.37 0.60 N 9 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 102.81 110.10 -7.29 1.00 N 10 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 102.34 108.00 -5.66 0.70 N 11 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.09 122.90 -3.81 0.60 N 12 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.60 118.90 4.70 0.60 N 13 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DG 10 ? ? 132.68 119.70 12.98 1.20 Y 14 1 "O3'" A DC 9 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 118.04 110.50 7.54 1.10 Y 15 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 109.73 106.00 3.73 0.60 N 16 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 116.12 111.90 4.22 0.50 N 17 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? "C2'" B DC 1 ? ? 100.33 105.90 -5.57 0.80 N 18 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.15 108.00 -4.85 0.70 N 19 1 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 123.31 118.90 4.41 0.60 N 20 1 N3 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 115.24 121.90 -6.66 0.70 N 21 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? "C2'" B DG 2 ? ? 100.35 105.90 -5.55 0.80 N 22 1 C2 B DG 2 ? ? N3 B DG 2 ? ? C4 B DG 2 ? ? 115.32 111.90 3.42 0.50 N 23 1 N3 B DG 2 ? ? C2 B DG 2 ? ? N2 B DG 2 ? ? 124.40 119.90 4.50 0.70 N 24 1 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9 B DA 3 ? ? 115.26 108.30 6.96 0.30 N 25 1 C5 B DA 3 ? ? N7 B DA 3 ? ? C8 B DA 3 ? ? 107.47 103.90 3.57 0.50 N 26 1 N7 B DA 3 ? ? C8 B DA 3 ? ? N9 B DA 3 ? ? 110.24 113.80 -3.56 0.50 N 27 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 98.53 108.00 -9.47 0.70 N 28 1 C5 B DT 5 ? ? C6 B DT 5 ? ? N1 B DT 5 ? ? 118.41 123.70 -5.29 0.60 N 29 1 C4 B DT 5 ? ? C5 B DT 5 ? ? C7 B DT 5 ? ? 93.65 119.00 -25.35 0.60 N 30 1 "C1'" B DT 6 ? ? "O4'" B DT 6 ? ? "C4'" B DT 6 ? ? 99.60 110.10 -10.50 1.00 N 31 1 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1 B DT 6 ? ? 121.30 108.30 13.00 0.30 N 32 1 N3 B DT 6 ? ? C2 B DT 6 ? ? O2 B DT 6 ? ? 118.36 122.30 -3.94 0.60 N 33 1 N3 B DT 6 ? ? C4 B DT 6 ? ? O4 B DT 6 ? ? 114.89 119.90 -5.01 0.60 N 34 1 C5 B DT 6 ? ? C4 B DT 6 ? ? O4 B DT 6 ? ? 129.27 124.90 4.37 0.70 N 35 1 C4 B DT 6 ? ? C5 B DT 6 ? ? C7 B DT 6 ? ? 107.65 119.00 -11.35 0.60 N 36 1 "O4'" B DA 8 ? ? "C4'" B DA 8 ? ? "C3'" B DA 8 ? ? 100.91 104.50 -3.59 0.40 N 37 1 "C1'" B DA 8 ? ? "O4'" B DA 8 ? ? "C4'" B DA 8 ? ? 100.53 110.10 -9.57 1.00 N 38 1 "O4'" B DG 9 ? ? "C4'" B DG 9 ? ? "C3'" B DG 9 ? ? 101.91 104.50 -2.59 0.40 N 39 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? "C2'" B DG 9 ? ? 97.76 105.90 -8.14 0.80 N 40 1 "C3'" B DG 9 ? ? "O3'" B DG 9 ? ? P B DC 10 ? ? 131.63 119.70 11.93 1.20 Y 41 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 110.27 108.30 1.97 0.30 N 42 1 C5 C DG 1 ? ? C6 C DG 1 ? ? N1 C DG 1 ? ? 114.86 111.50 3.36 0.50 N 43 1 "C3'" C DG 1 ? ? "O3'" C DG 1 ? ? P C DC 2 ? ? 131.84 119.70 12.14 1.20 Y 44 1 "C1'" C DC 2 ? ? "O4'" C DC 2 ? ? "C4'" C DC 2 ? ? 103.94 110.10 -6.16 1.00 N 45 1 "C4'" C DC 2 ? ? "C3'" C DC 2 ? ? "C2'" C DC 2 ? ? 94.91 102.20 -7.29 0.70 N 46 1 "C3'" C DC 2 ? ? "O3'" C DC 2 ? ? P C BRU 3 ? ? 128.07 119.70 8.37 1.20 Y 47 1 "C1'" C DT 4 ? ? "O4'" C DT 4 ? ? "C4'" C DT 4 ? ? 102.46 110.10 -7.64 1.00 N 48 1 "O4'" C DT 7 ? ? "C1'" C DT 7 ? ? N1 C DT 7 ? ? 112.90 108.30 4.60 0.30 N 49 1 "C4'" C DG 10 ? ? "C3'" C DG 10 ? ? "C2'" C DG 10 ? ? 97.81 102.20 -4.39 0.70 N 50 1 N3 C DG 10 ? ? C4 C DG 10 ? ? C5 C DG 10 ? ? 125.54 128.60 -3.06 0.50 N 51 1 C4 C DG 10 ? ? C5 C DG 10 ? ? N7 C DG 10 ? ? 107.78 110.80 -3.02 0.40 N 52 1 C8 C DG 10 ? ? N9 C DG 10 ? ? C4 C DG 10 ? ? 102.80 106.40 -3.60 0.40 N 53 1 N9 C DG 10 ? ? C4 C DG 10 ? ? C5 C DG 10 ? ? 108.70 105.40 3.30 0.40 N 54 1 C5 C DG 10 ? ? C6 C DG 10 ? ? O6 C DG 10 ? ? 132.43 128.60 3.83 0.60 N 55 1 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 113.41 108.30 5.11 0.30 N 56 1 "O4'" D DT 5 ? ? "C1'" D DT 5 ? ? N1 D DT 5 ? ? 100.24 108.00 -7.76 0.70 N 57 1 C5 D DT 5 ? ? C6 D DT 5 ? ? N1 D DT 5 ? ? 119.15 123.70 -4.55 0.60 N 58 1 C4 D DT 5 ? ? C5 D DT 5 ? ? C7 D DT 5 ? ? 93.57 119.00 -25.43 0.60 N 59 1 "C1'" D DT 6 ? ? "O4'" D DT 6 ? ? "C4'" D DT 6 ? ? 98.75 110.10 -11.35 1.00 N 60 1 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? N1 D DT 6 ? ? 121.35 108.30 13.05 0.30 N 61 1 N3 D DT 6 ? ? C2 D DT 6 ? ? O2 D DT 6 ? ? 118.31 122.30 -3.99 0.60 N 62 1 N3 D DT 6 ? ? C4 D DT 6 ? ? O4 D DT 6 ? ? 115.32 119.90 -4.58 0.60 N 63 1 C4 D DT 6 ? ? C5 D DT 6 ? ? C7 D DT 6 ? ? 107.80 119.00 -11.20 0.60 N 64 1 "C3'" D DA 8 ? ? "C2'" D DA 8 ? ? "C1'" D DA 8 ? ? 95.89 102.40 -6.51 0.80 N 65 1 "O4'" D DA 8 ? ? "C1'" D DA 8 ? ? "C2'" D DA 8 ? ? 110.73 106.80 3.93 0.50 N 66 1 "C3'" D DA 8 ? ? "O3'" D DA 8 ? ? P D DG 9 ? ? 127.89 119.70 8.19 1.20 Y 67 1 N1 D DG 9 ? ? C6 D DG 9 ? ? O6 D DG 9 ? ? 114.13 119.90 -5.77 0.60 N 68 1 C5 D DG 9 ? ? C6 D DG 9 ? ? O6 D DG 9 ? ? 132.64 128.60 4.04 0.60 N 69 1 "C1'" D DC 10 ? ? "O4'" D DC 10 ? ? "C4'" D DC 10 ? ? 102.65 110.10 -7.45 1.00 N 70 1 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.49 108.30 2.19 0.30 N 71 1 N1 D DC 10 ? ? C2 D DC 10 ? ? O2 D DC 10 ? ? 122.57 118.90 3.67 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC C 2 ? ? 0.098 'SIDE CHAIN' 2 1 DG C 10 ? ? 0.061 'SIDE CHAIN' 3 1 DG D 2 ? ? 0.095 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 3 A BRU 3 ? DU ? 2 A BRU 8 A BRU 8 ? DU ? 3 C BRU 3 C BRU 3 ? DU ? 4 C BRU 8 C BRU 8 ? DU ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 # _ndb_struct_conf_na.entry_id 1SM5 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.108 -0.174 -0.125 -0.092 -13.479 -0.133 1 A_DG1:DC10_B A 1 ? B 10 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.730 -0.392 0.540 -8.862 -12.893 1.565 2 A_DC2:DG9_B A 2 ? B 9 ? 19 1 1 A BRU 3 1_555 B DA 8 1_555 -0.235 -0.263 0.306 -4.585 -17.586 -2.663 3 A_BRU3:DA8_B A 3 ? B 8 ? 20 1 1 A DT 4 1_555 B DA 7 1_555 0.569 -0.262 -0.296 12.096 -14.438 3.169 4 A_DT4:DA7_B A 4 ? B 7 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 0.192 -0.141 0.773 21.707 8.069 -0.812 5 A_DA5:DT6_B A 5 ? B 6 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 -0.283 -0.134 -1.696 -25.878 -23.605 4.352 6 A_DA6:DT5_B A 6 ? B 5 ? 20 1 1 A DT 7 1_555 B DA 4 1_555 -0.169 -0.163 -0.278 10.974 -11.711 5.969 7 A_DT7:DA4_B A 7 ? B 4 ? 20 1 1 A BRU 8 1_555 B DA 3 1_555 -0.279 -0.088 -0.073 5.171 -15.095 3.182 8 A_BRU8:DA3_B A 8 ? B 3 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.224 -0.184 -0.584 13.994 -14.781 -0.349 9 A_DC9:DG2_B A 9 ? B 2 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.115 -0.011 0.251 14.198 -6.210 -2.281 10 A_DG10:DC1_B A 10 ? B 1 ? 19 1 1 C DG 1 1_555 D DC 10 1_555 -0.086 0.086 -0.222 -2.145 -6.088 -0.559 11 C_DG1:DC10_D C 1 ? D 10 ? 19 1 1 C DC 2 1_555 D DG 9 1_555 0.511 -0.253 0.547 -16.789 -17.407 -2.097 12 C_DC2:DG9_D C 2 ? D 9 ? 19 1 1 C BRU 3 1_555 D DA 8 1_555 -0.244 -0.028 -0.059 -4.997 -12.908 5.030 13 C_BRU3:DA8_D C 3 ? D 8 ? 20 1 1 C DT 4 1_555 D DA 7 1_555 -0.154 -0.185 0.038 -3.021 -10.596 2.137 14 C_DT4:DA7_D C 4 ? D 7 ? 20 1 1 C DA 5 1_555 D DT 6 1_555 0.140 -0.097 0.790 18.527 -0.918 -2.948 15 C_DA5:DT6_D C 5 ? D 6 ? 20 1 1 C DA 6 1_555 D DT 5 1_555 0.450 -0.030 -1.697 -31.290 -28.914 5.333 16 C_DA6:DT5_D C 6 ? D 5 ? 20 1 1 C DT 7 1_555 D DA 4 1_555 -0.568 -0.086 0.077 0.330 -18.596 1.523 17 C_DT7:DA4_D C 7 ? D 4 ? 20 1 1 C BRU 8 1_555 D DA 3 1_555 -0.201 -0.029 -0.190 1.332 -15.264 -0.320 18 C_BRU8:DA3_D C 8 ? D 3 ? 20 1 1 C DC 9 1_555 D DG 2 1_555 -0.089 -0.031 -0.052 7.807 -15.935 -1.753 19 C_DC9:DG2_D C 9 ? D 2 ? 19 1 1 C DG 10 1_555 D DC 1 1_555 -0.107 -0.222 -0.434 4.072 9.797 -1.301 20 C_DG10:DC1_D C 10 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.362 -0.322 3.528 -6.473 -1.585 41.360 -0.271 -0.230 3.552 -2.226 9.094 41.871 1 AA_DG1DC2:DG9DC10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A DC 2 1_555 B DG 9 1_555 A BRU 3 1_555 B DA 8 1_555 -0.475 -0.502 3.005 1.184 4.014 29.507 -1.735 1.147 2.892 7.832 -2.310 29.796 2 AA_DC2BRU3:DA8DG9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A BRU 3 1_555 B DA 8 1_555 A DT 4 1_555 B DA 7 1_555 0.222 -0.206 2.857 2.936 -0.852 35.631 -0.228 0.010 2.869 -1.389 -4.788 35.758 3 AA_BRU3DT4:DA7DA8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B DT 6 1_555 1.424 0.064 3.123 -6.904 2.744 36.838 -0.228 -3.038 2.818 4.288 10.790 37.555 4 AA_DT4DA5:DT6DA7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DA 5 1_555 B DT 6 1_555 A DA 6 1_555 B DT 5 1_555 -1.718 0.028 4.362 24.313 21.915 23.339 -2.898 5.772 1.564 37.121 -41.182 40.014 5 AA_DA5DA6:DT5DT6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DA 6 1_555 B DT 5 1_555 A DT 7 1_555 B DA 4 1_555 0.095 0.101 2.442 -17.039 3.897 28.686 -0.303 -2.258 2.063 7.094 31.020 33.496 6 AA_DA6DT7:DA4DT5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DT 7 1_555 B DA 4 1_555 A BRU 8 1_555 B DA 3 1_555 0.162 -0.359 3.425 2.245 4.583 31.434 -1.525 0.132 3.344 8.390 -4.111 31.836 7 AA_DT7BRU8:DA3DA4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A BRU 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.151 1.017 2.999 5.713 4.099 42.598 1.009 0.727 3.036 5.597 -7.800 43.148 8 AA_BRU8DC9:DG2DA3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.226 0.456 3.387 -6.134 5.592 34.917 -0.103 -0.559 3.407 9.159 10.048 35.860 9 AA_DC9DG10:DC1DG2_BB A 9 ? B 2 ? A 10 ? B 1 ? 1 C DG 1 1_555 D DC 10 1_555 C DC 2 1_555 D DG 9 1_555 -0.757 -0.508 3.570 -6.738 -0.147 36.170 -0.784 0.179 3.649 -0.234 10.737 36.772 10 CC_DG1DC2:DG9DC10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C DC 2 1_555 D DG 9 1_555 C BRU 3 1_555 D DA 8 1_555 -0.474 -0.334 2.905 4.507 4.884 25.290 -1.890 2.111 2.671 10.916 -10.075 26.134 11 CC_DC2BRU3:DA8DG9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C BRU 3 1_555 D DA 8 1_555 C DT 4 1_555 D DA 7 1_555 0.342 -0.011 3.409 -0.817 5.731 33.996 -0.945 -0.709 3.354 9.714 1.385 34.471 12 CC_BRU3DT4:DA7DA8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C DT 4 1_555 D DA 7 1_555 C DA 5 1_555 D DT 6 1_555 1.142 0.119 2.786 -2.192 -3.246 42.327 0.441 -1.762 2.711 -4.484 3.028 42.500 13 CC_DT4DA5:DT6DA7_DD C 4 ? D 7 ? C 5 ? D 6 ? 1 C DA 5 1_555 D DT 6 1_555 C DA 6 1_555 D DT 5 1_555 -1.171 -0.109 4.414 24.936 22.815 25.804 -3.060 4.803 1.996 36.240 -39.610 42.293 14 CC_DA5DA6:DT5DT6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C DA 6 1_555 D DT 5 1_555 C DT 7 1_555 D DA 4 1_555 -0.068 -0.081 2.573 -20.413 -0.812 24.610 -0.028 -2.858 2.041 -1.598 40.183 31.883 15 CC_DA6DT7:DA4DT5_DD C 6 ? D 5 ? C 7 ? D 4 ? 1 C DT 7 1_555 D DA 4 1_555 C BRU 8 1_555 D DA 3 1_555 -0.064 -0.272 3.319 4.246 4.018 35.485 -1.020 0.716 3.241 6.537 -6.908 35.948 16 CC_DT7BRU8:DA3DA4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C BRU 8 1_555 D DA 3 1_555 C DC 9 1_555 D DG 2 1_555 0.517 0.464 3.220 1.627 7.828 32.330 -0.504 -0.629 3.261 13.796 -2.867 33.278 17 CC_BRU8DC9:DG2DA3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C DC 9 1_555 D DG 2 1_555 C DG 10 1_555 D DC 1 1_555 -0.188 0.687 3.669 0.484 -6.372 45.918 1.472 0.284 3.547 -8.121 -0.617 46.336 18 CC_DC9DG10:DC1DG2_DD C 9 ? D 2 ? C 10 ? D 1 ? # _atom_sites.entry_id 1SM5 _atom_sites.fract_transf_matrix[1][1] 0.040816 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018570 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013275 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_