HEADER OXIDOREDUCTASE 09-MAR-04 1SMS TITLE STRUCTURE OF THE RIBONUCLEOTIDE REDUCTASE RNR4 HOMODIMER FROM TITLE 2 SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RNR4, YGR180C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SOMMERHALTER,W.C.VOEGTLI,D.L.PERLSTEIN,J.GE,J.STUBBE,A.C.ROSENZWEIG REVDAT 3 23-AUG-23 1SMS 1 REMARK LINK REVDAT 2 24-FEB-09 1SMS 1 VERSN REVDAT 1 10-AUG-04 1SMS 0 JRNL AUTH M.SOMMERHALTER,W.C.VOEGTLI,D.L.PERLSTEIN,J.GE,J.STUBBE, JRNL AUTH 2 A.C.ROSENZWEIG JRNL TITL STRUCTURES OF THE YEAST RIBONUCLEOTIDE REDUCTASE RNR2 AND JRNL TITL 2 RNR4 HOMODIMERS. JRNL REF BIOCHEMISTRY V. 43 7736 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15196016 JRNL DOI 10.1021/BI049510M REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 611 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 239131 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JK0 SUBUNIT Y4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG 1000, ETHANOL, SODIUM REMARK 280 CHLORIDE, EMTS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 145.40000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 181.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 306 REMARK 465 VAL A 307 REMARK 465 ALA A 308 REMARK 465 THR A 309 REMARK 465 ALA A 310 REMARK 465 GLY A 311 REMARK 465 LYS A 312 REMARK 465 THR A 313 REMARK 465 THR A 314 REMARK 465 ALA A 326 REMARK 465 SER A 327 REMARK 465 ASP A 328 REMARK 465 MET A 329 REMARK 465 SER A 330 REMARK 465 LYS A 331 REMARK 465 SER A 332 REMARK 465 ALA A 333 REMARK 465 THR A 334 REMARK 465 PRO A 335 REMARK 465 SER A 336 REMARK 465 LYS A 337 REMARK 465 GLU A 338 REMARK 465 ILE A 339 REMARK 465 ASN A 340 REMARK 465 PHE A 341 REMARK 465 ASP A 342 REMARK 465 ASP A 343 REMARK 465 ASP A 344 REMARK 465 PHE A 345 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 306 REMARK 465 VAL B 307 REMARK 465 ALA B 308 REMARK 465 THR B 309 REMARK 465 ALA B 310 REMARK 465 GLY B 311 REMARK 465 LYS B 312 REMARK 465 THR B 313 REMARK 465 THR B 314 REMARK 465 ALA B 326 REMARK 465 SER B 327 REMARK 465 ASP B 328 REMARK 465 MET B 329 REMARK 465 SER B 330 REMARK 465 LYS B 331 REMARK 465 SER B 332 REMARK 465 ALA B 333 REMARK 465 THR B 334 REMARK 465 PRO B 335 REMARK 465 SER B 336 REMARK 465 LYS B 337 REMARK 465 GLU B 338 REMARK 465 ILE B 339 REMARK 465 ASN B 340 REMARK 465 PHE B 341 REMARK 465 ASP B 342 REMARK 465 ASP B 343 REMARK 465 ASP B 344 REMARK 465 PHE B 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 37 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 PRO A 207 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO A 263 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 MET B 37 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 PRO B 207 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO B 263 C - N - CA ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 23.62 -66.59 REMARK 500 GLU A 30 106.09 -35.97 REMARK 500 ASN A 31 -162.39 -122.22 REMARK 500 ARG A 33 90.07 -39.25 REMARK 500 VAL A 36 89.43 -55.87 REMARK 500 PHE A 38 -100.30 -63.44 REMARK 500 PRO A 39 68.04 0.35 REMARK 500 ALA A 65 151.15 169.38 REMARK 500 GLU A 69 -79.05 -55.56 REMARK 500 ASP A 70 -24.20 -36.75 REMARK 500 PHE A 71 -72.59 -69.96 REMARK 500 GLN A 72 -2.89 -55.33 REMARK 500 LYS A 73 54.39 -116.36 REMARK 500 THR A 75 -174.18 -58.94 REMARK 500 LEU A 86 -4.01 -57.20 REMARK 500 SER A 89 -72.94 -98.87 REMARK 500 ILE A 90 -8.10 -45.60 REMARK 500 SER A 92 -84.41 -103.42 REMARK 500 GLU A 112 -38.49 -37.63 REMARK 500 LYS A 114 2.08 -61.43 REMARK 500 SER A 132 5.47 -67.38 REMARK 500 LYS A 140 -38.42 52.62 REMARK 500 ASN A 144 5.46 -59.70 REMARK 500 PRO A 146 -85.02 -58.23 REMARK 500 LEU A 147 -23.29 -36.65 REMARK 500 LYS A 149 -33.28 -177.85 REMARK 500 ASN A 153 48.06 -109.20 REMARK 500 ILE A 168 -95.35 -105.49 REMARK 500 SER A 169 86.02 -55.90 REMARK 500 ASN A 193 -51.82 -29.68 REMARK 500 SER A 196 -81.07 -57.80 REMARK 500 PHE A 198 -73.92 -57.10 REMARK 500 LEU A 200 -97.82 -44.30 REMARK 500 THR A 201 -37.08 -28.11 REMARK 500 ASP A 202 117.08 -35.54 REMARK 500 LYS A 203 -78.53 85.53 REMARK 500 MET A 206 87.86 14.29 REMARK 500 ASN A 215 -84.67 -65.86 REMARK 500 ILE A 216 -58.73 -22.28 REMARK 500 ARG A 218 -76.28 -57.17 REMARK 500 ARG A 235 -70.55 -70.48 REMARK 500 GLU A 244 -71.02 -64.44 REMARK 500 GLU A 256 -42.47 -24.51 REMARK 500 ASN A 260 -82.79 -113.44 REMARK 500 SER A 261 -87.27 -58.68 REMARK 500 PRO A 263 -97.92 -21.01 REMARK 500 VAL A 264 -23.96 78.98 REMARK 500 LEU A 271 -48.09 -14.66 REMARK 500 TYR A 294 -78.78 -113.21 REMARK 500 GLU A 302 96.97 -58.80 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 501 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 217 O REMARK 620 2 CYS A 217 SG 68.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 503 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 217 SG REMARK 620 2 CYS B 217 O 69.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JK0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE RIBONUCLEOTIDE REDUCTASE Y2Y4 (RNR2RNR4) REMARK 900 HETERODIMER FROM SACCHAROMYCES CEREVISIAE REMARK 900 RELATED ID: 1SMQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE RIBONUCLEOTIDE REDUCTASE RNR2 HOMODIMER FROM REMARK 900 SACCHAROMYCES CEREVISIAE DBREF 1SMS A 1 345 UNP P49723 RIR4_YEAST 1 345 DBREF 1SMS B 1 345 UNP P49723 RIR4_YEAST 1 345 SEQRES 1 A 345 MET GLU ALA HIS ASN GLN PHE LEU LYS THR PHE GLN LYS SEQRES 2 A 345 GLU ARG HIS ASP MET LYS GLU ALA GLU LYS ASP GLU ILE SEQRES 3 A 345 LEU LEU MET GLU ASN SER ARG ARG PHE VAL MET PHE PRO SEQRES 4 A 345 ILE LYS TYR HIS GLU ILE TRP ALA ALA TYR LYS LYS VAL SEQRES 5 A 345 GLU ALA SER PHE TRP THR ALA GLU GLU ILE GLU LEU ALA SEQRES 6 A 345 LYS ASP THR GLU ASP PHE GLN LYS LEU THR ASP ASP GLN SEQRES 7 A 345 LYS THR TYR ILE GLY ASN LEU LEU ALA LEU SER ILE SER SEQRES 8 A 345 SER ASP ASN LEU VAL ASN LYS TYR LEU ILE GLU ASN PHE SEQRES 9 A 345 SER ALA GLN LEU GLN ASN PRO GLU GLY LYS SER PHE TYR SEQRES 10 A 345 GLY PHE GLN ILE MET MET GLU ASN ILE TYR SER GLU VAL SEQRES 11 A 345 TYR SER MET MET VAL ASP ALA PHE PHE LYS ASP PRO LYS SEQRES 12 A 345 ASN ILE PRO LEU PHE LYS GLU ILE ALA ASN LEU PRO GLU SEQRES 13 A 345 VAL LYS HIS LYS ALA ALA PHE ILE GLU ARG TRP ILE SER SEQRES 14 A 345 ASN ASP ASP SER LEU TYR ALA GLU ARG LEU VAL ALA PHE SEQRES 15 A 345 ALA ALA LYS GLU GLY ILE PHE GLN ALA GLY ASN TYR ALA SEQRES 16 A 345 SER MET PHE TRP LEU THR ASP LYS LYS ILE MET PRO GLY SEQRES 17 A 345 LEU ALA MET ALA ASN ARG ASN ILE CYS ARG ASP ARG GLY SEQRES 18 A 345 ALA TYR THR ASP PHE SER CYS LEU LEU PHE ALA HIS LEU SEQRES 19 A 345 ARG THR LYS PRO ASN PRO LYS ILE ILE GLU LYS ILE ILE SEQRES 20 A 345 THR GLU ALA VAL GLU ILE GLU LYS GLU TYR TYR SER ASN SEQRES 21 A 345 SER LEU PRO VAL GLU LYS PHE GLY MET ASP LEU LYS SER SEQRES 22 A 345 ILE HIS THR TYR ILE GLU PHE VAL ALA ASP GLY LEU LEU SEQRES 23 A 345 GLN GLY PHE GLY ASN GLU LYS TYR TYR ASN ALA VAL ASN SEQRES 24 A 345 PRO PHE GLU PHE MET GLU ASP VAL ALA THR ALA GLY LYS SEQRES 25 A 345 THR THR PHE PHE GLU LYS LYS VAL SER ASP TYR GLN LYS SEQRES 26 A 345 ALA SER ASP MET SER LYS SER ALA THR PRO SER LYS GLU SEQRES 27 A 345 ILE ASN PHE ASP ASP ASP PHE SEQRES 1 B 345 MET GLU ALA HIS ASN GLN PHE LEU LYS THR PHE GLN LYS SEQRES 2 B 345 GLU ARG HIS ASP MET LYS GLU ALA GLU LYS ASP GLU ILE SEQRES 3 B 345 LEU LEU MET GLU ASN SER ARG ARG PHE VAL MET PHE PRO SEQRES 4 B 345 ILE LYS TYR HIS GLU ILE TRP ALA ALA TYR LYS LYS VAL SEQRES 5 B 345 GLU ALA SER PHE TRP THR ALA GLU GLU ILE GLU LEU ALA SEQRES 6 B 345 LYS ASP THR GLU ASP PHE GLN LYS LEU THR ASP ASP GLN SEQRES 7 B 345 LYS THR TYR ILE GLY ASN LEU LEU ALA LEU SER ILE SER SEQRES 8 B 345 SER ASP ASN LEU VAL ASN LYS TYR LEU ILE GLU ASN PHE SEQRES 9 B 345 SER ALA GLN LEU GLN ASN PRO GLU GLY LYS SER PHE TYR SEQRES 10 B 345 GLY PHE GLN ILE MET MET GLU ASN ILE TYR SER GLU VAL SEQRES 11 B 345 TYR SER MET MET VAL ASP ALA PHE PHE LYS ASP PRO LYS SEQRES 12 B 345 ASN ILE PRO LEU PHE LYS GLU ILE ALA ASN LEU PRO GLU SEQRES 13 B 345 VAL LYS HIS LYS ALA ALA PHE ILE GLU ARG TRP ILE SER SEQRES 14 B 345 ASN ASP ASP SER LEU TYR ALA GLU ARG LEU VAL ALA PHE SEQRES 15 B 345 ALA ALA LYS GLU GLY ILE PHE GLN ALA GLY ASN TYR ALA SEQRES 16 B 345 SER MET PHE TRP LEU THR ASP LYS LYS ILE MET PRO GLY SEQRES 17 B 345 LEU ALA MET ALA ASN ARG ASN ILE CYS ARG ASP ARG GLY SEQRES 18 B 345 ALA TYR THR ASP PHE SER CYS LEU LEU PHE ALA HIS LEU SEQRES 19 B 345 ARG THR LYS PRO ASN PRO LYS ILE ILE GLU LYS ILE ILE SEQRES 20 B 345 THR GLU ALA VAL GLU ILE GLU LYS GLU TYR TYR SER ASN SEQRES 21 B 345 SER LEU PRO VAL GLU LYS PHE GLY MET ASP LEU LYS SER SEQRES 22 B 345 ILE HIS THR TYR ILE GLU PHE VAL ALA ASP GLY LEU LEU SEQRES 23 B 345 GLN GLY PHE GLY ASN GLU LYS TYR TYR ASN ALA VAL ASN SEQRES 24 B 345 PRO PHE GLU PHE MET GLU ASP VAL ALA THR ALA GLY LYS SEQRES 25 B 345 THR THR PHE PHE GLU LYS LYS VAL SER ASP TYR GLN LYS SEQRES 26 B 345 ALA SER ASP MET SER LYS SER ALA THR PRO SER LYS GLU SEQRES 27 B 345 ILE ASN PHE ASP ASP ASP PHE HET HG A 501 1 HET HG A 502 1 HET HG B 503 1 HET HG B 504 1 HETNAM HG MERCURY (II) ION FORMUL 3 HG 4(HG 2+) HELIX 1 1 ALA A 3 THR A 10 1 8 HELIX 2 2 ARG A 15 LYS A 23 1 9 HELIX 3 3 ASP A 24 MET A 29 5 6 HELIX 4 4 TYR A 42 SER A 55 1 14 HELIX 5 5 THR A 58 ILE A 62 5 5 HELIX 6 6 THR A 68 LYS A 73 1 6 HELIX 7 7 ASP A 76 SER A 91 1 16 HELIX 8 8 SER A 92 LEU A 108 1 17 HELIX 9 9 ASN A 110 LYS A 140 1 31 HELIX 10 10 ASP A 141 ILE A 145 5 5 HELIX 11 11 LEU A 154 ILE A 168 1 15 HELIX 12 12 LEU A 174 ILE A 188 1 15 HELIX 13 13 GLN A 190 ASP A 202 1 13 HELIX 14 14 MET A 206 ALA A 232 1 27 HELIX 15 15 ASN A 239 ASN A 260 1 22 HELIX 16 16 LEU A 271 GLY A 288 1 18 HELIX 17 17 PHE A 315 TYR A 323 1 9 HELIX 18 18 ALA B 3 THR B 10 1 8 HELIX 19 19 ARG B 15 LYS B 23 1 9 HELIX 20 20 ASP B 24 MET B 29 5 6 HELIX 21 21 TYR B 42 SER B 55 1 14 HELIX 22 22 THR B 58 ILE B 62 5 5 HELIX 23 23 THR B 68 LYS B 73 1 6 HELIX 24 24 ASP B 76 SER B 91 1 16 HELIX 25 25 SER B 92 LEU B 108 1 17 HELIX 26 26 ASN B 110 LYS B 140 1 31 HELIX 27 27 ASP B 141 ILE B 145 5 5 HELIX 28 28 LEU B 154 ILE B 168 1 15 HELIX 29 29 LEU B 174 ILE B 188 1 15 HELIX 30 30 GLN B 190 ASP B 202 1 13 HELIX 31 31 MET B 206 ALA B 232 1 27 HELIX 32 32 ASN B 239 ASN B 260 1 22 HELIX 33 33 LEU B 271 GLY B 288 1 18 HELIX 34 34 PHE B 315 TYR B 323 1 9 LINK O CYS A 217 HG HG A 501 1555 1555 3.23 LINK SG CYS A 217 HG HG A 501 1555 1555 2.55 LINK SG CYS B 217 HG HG B 503 1555 1555 2.54 LINK O CYS B 217 HG HG B 503 1555 1555 3.25 SITE 1 AC1 2 TYR A 194 CYS A 217 SITE 1 AC2 1 CYS A 228 SITE 1 AC3 2 TYR B 194 CYS B 217 SITE 1 AC4 1 CYS B 228 CRYST1 79.600 79.600 218.100 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012563 0.007253 0.000000 0.00000 SCALE2 0.000000 0.014506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004585 0.00000