HEADER TRANSPORT PROTEIN 10-MAR-04 1SN2 TITLE CRYSTAL STRUCTURE OF SEA BREAM TRANSTHYRETIN AT 1.90A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPARUS AURATA; SOURCE 3 ORGANISM_COMMON: GILTHEAD SEABREAM; SOURCE 4 ORGANISM_TAXID: 8175; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ENEQVIST,E.LUNDBERG,A.KARLSSON,S.HUANG,C.R.CANTOS,D.M.POWER, AUTHOR 2 A.E.SAUER-ERIKSSON REVDAT 5 23-AUG-23 1SN2 1 REMARK SEQADV REVDAT 4 30-APR-14 1SN2 1 REMARK REVDAT 3 13-JUL-11 1SN2 1 VERSN REVDAT 2 24-FEB-09 1SN2 1 VERSN REVDAT 1 03-AUG-04 1SN2 0 JRNL AUTH T.ENEQVIST,E.LUNDBERG,A.KARLSSON,S.HUANG,C.R.SANTOS, JRNL AUTH 2 D.M.POWER,A.E.SAUER-ERIKSSON JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF PISCINE TRANSTHYRETIN JRNL TITL 2 REVEAL DIFFERENT BINDING MODES FOR TRIIODOTHYRONINE AND JRNL TITL 3 THYROXINE. JRNL REF J.BIOL.CHEM. V. 279 26411 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15082720 JRNL DOI 10.1074/JBC.M313553200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4439 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3529 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3647 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3212 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4996 ; 1.303 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7485 ; 0.718 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 3.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;18.389 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4054 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 714 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 651 ; 0.228 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3103 ; 0.215 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 410 ; 0.184 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.049 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.326 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.278 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.259 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2307 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3755 ; 1.316 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 1.622 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1241 ; 2.757 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 127 REMARK 3 ORIGIN FOR THE GROUP (A): -47.7645 -11.5398 -18.8138 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.0753 REMARK 3 T33: 0.0885 T12: 0.0020 REMARK 3 T13: 0.0022 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.3836 L22: 0.4226 REMARK 3 L33: 0.9109 L12: -0.0362 REMARK 3 L13: 0.3025 L23: 0.3046 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0204 S13: 0.0505 REMARK 3 S21: -0.0466 S22: 0.0351 S23: -0.0916 REMARK 3 S31: 0.0072 S32: 0.0184 S33: -0.0288 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): -67.9512 -12.0502 -17.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.0739 REMARK 3 T33: 0.0815 T12: -0.0063 REMARK 3 T13: 0.0075 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.4315 L22: 0.5321 REMARK 3 L33: 0.6980 L12: -0.0720 REMARK 3 L13: 0.2554 L23: -0.2018 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0280 S13: 0.0387 REMARK 3 S21: 0.0677 S22: 0.0447 S23: 0.0830 REMARK 3 S31: 0.0153 S32: -0.0212 S33: -0.0424 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 125 REMARK 3 ORIGIN FOR THE GROUP (A): -46.7871 -36.7580 -16.4387 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.0390 REMARK 3 T33: 0.0746 T12: 0.0193 REMARK 3 T13: -0.0333 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.5809 L22: 1.6767 REMARK 3 L33: 0.6172 L12: -0.2543 REMARK 3 L13: -0.0643 L23: 0.2737 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.0027 S13: 0.0013 REMARK 3 S21: -0.0240 S22: 0.0642 S23: -0.1742 REMARK 3 S31: 0.1051 S32: 0.0454 S33: -0.0964 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 11 D 123 REMARK 3 ORIGIN FOR THE GROUP (A): -66.6215 -37.7397 -20.3748 REMARK 3 T TENSOR REMARK 3 T11: 0.1326 T22: 0.0349 REMARK 3 T33: 0.0980 T12: -0.0092 REMARK 3 T13: -0.0283 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4484 L22: 1.9009 REMARK 3 L33: 0.2577 L12: 0.1793 REMARK 3 L13: -0.2876 L23: -0.2679 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.0559 S13: -0.0499 REMARK 3 S21: 0.0332 S22: 0.0052 S23: 0.2138 REMARK 3 S31: 0.0101 S32: 0.0224 S33: -0.0479 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 701 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): -38.2774 -18.4355 -4.1165 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.0988 REMARK 3 T33: 0.0756 T12: 0.0082 REMARK 3 T13: -0.0771 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 32.4709 L22: 743.3013 REMARK 3 L33: -95.6478 L12: 167.3670 REMARK 3 L13:-241.7608 L23: 268.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.5774 S12: 0.1284 S13: -1.7714 REMARK 3 S21: -3.1792 S22: -2.6183 S23: 5.2541 REMARK 3 S31: -0.1019 S32: 0.3142 S33: 3.1956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: HUMAN TRANSTHYRETIN, PDB CODE 1F41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1550 MME, SODIUM CITRATE, AMMONIUM REMARK 280 SULPHATE, NICKEL SULPHATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.35500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.17750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.53250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE ASYMMETRIC UNIT CONTAINS ONE TRANSTHYRETIN HOMO-TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A -2 REMARK 465 PRO A -1 REMARK 465 THR A 0 REMARK 465 ASP A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 ARG A 9 REMARK 465 THR B -2 REMARK 465 PRO B -1 REMARK 465 THR B 0 REMARK 465 ASP B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 ASP B 7 REMARK 465 THR B 8 REMARK 465 ARG B 9 REMARK 465 HIS B 126 REMARK 465 GLU B 127 REMARK 465 THR C -2 REMARK 465 PRO C -1 REMARK 465 THR C 0 REMARK 465 ASP C 1 REMARK 465 LYS C 2 REMARK 465 HIS C 3 REMARK 465 GLY C 4 REMARK 465 GLY C 5 REMARK 465 SER C 6 REMARK 465 ASP C 7 REMARK 465 THR C 8 REMARK 465 ARG C 9 REMARK 465 CYS C 10 REMARK 465 HIS C 126 REMARK 465 GLU C 127 REMARK 465 THR D -2 REMARK 465 PRO D -1 REMARK 465 THR D 0 REMARK 465 ASP D 1 REMARK 465 LYS D 2 REMARK 465 HIS D 3 REMARK 465 GLY D 4 REMARK 465 GLY D 5 REMARK 465 SER D 6 REMARK 465 ASP D 7 REMARK 465 THR D 8 REMARK 465 ARG D 9 REMARK 465 SER D 124 REMARK 465 VAL D 125 REMARK 465 HIS D 126 REMARK 465 GLU D 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 96 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 99 33.32 -82.90 REMARK 500 ARG C 103 109.20 -29.91 REMARK 500 GLU D 100 75.40 -51.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SN0 RELATED DB: PDB REMARK 900 RELATED ID: 1SN5 RELATED DB: PDB DBREF 1SN2 A -2 127 UNP Q9PTT3 Q9PTT3_SPAAU 21 150 DBREF 1SN2 B -2 127 UNP Q9PTT3 Q9PTT3_SPAAU 21 150 DBREF 1SN2 C -2 127 UNP Q9PTT3 Q9PTT3_SPAAU 21 150 DBREF 1SN2 D -2 127 UNP Q9PTT3 Q9PTT3_SPAAU 21 150 SEQADV 1SN2 ARG A 103 UNP Q9PTT3 GLY 126 CONFLICT SEQADV 1SN2 ARG B 103 UNP Q9PTT3 GLY 126 CONFLICT SEQADV 1SN2 ARG C 103 UNP Q9PTT3 GLY 126 CONFLICT SEQADV 1SN2 ARG D 103 UNP Q9PTT3 GLY 126 CONFLICT SEQRES 1 A 130 THR PRO THR ASP LYS HIS GLY GLY SER ASP THR ARG CYS SEQRES 2 A 130 PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS GLY THR SEQRES 3 A 130 PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN LYS THR SEQRES 4 A 130 ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY VAL THR SEQRES 5 A 130 ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR GLU GLN SEQRES 6 A 130 GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE ASP THR SEQRES 7 A 130 LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO PHE HIS SEQRES 8 A 130 GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO GLU GLY SEQRES 9 A 130 HIS ARG HIS TYR THR LEU ALA LEU LEU LEU SER PRO PHE SEQRES 10 A 130 SER TYR THR THR THR ALA VAL VAL SER SER VAL HIS GLU SEQRES 1 B 130 THR PRO THR ASP LYS HIS GLY GLY SER ASP THR ARG CYS SEQRES 2 B 130 PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS GLY THR SEQRES 3 B 130 PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN LYS THR SEQRES 4 B 130 ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY VAL THR SEQRES 5 B 130 ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR GLU GLN SEQRES 6 B 130 GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE ASP THR SEQRES 7 B 130 LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO PHE HIS SEQRES 8 B 130 GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO GLU GLY SEQRES 9 B 130 HIS ARG HIS TYR THR LEU ALA LEU LEU LEU SER PRO PHE SEQRES 10 B 130 SER TYR THR THR THR ALA VAL VAL SER SER VAL HIS GLU SEQRES 1 C 130 THR PRO THR ASP LYS HIS GLY GLY SER ASP THR ARG CYS SEQRES 2 C 130 PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS GLY THR SEQRES 3 C 130 PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN LYS THR SEQRES 4 C 130 ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY VAL THR SEQRES 5 C 130 ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR GLU GLN SEQRES 6 C 130 GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE ASP THR SEQRES 7 C 130 LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO PHE HIS SEQRES 8 C 130 GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO GLU GLY SEQRES 9 C 130 HIS ARG HIS TYR THR LEU ALA LEU LEU LEU SER PRO PHE SEQRES 10 C 130 SER TYR THR THR THR ALA VAL VAL SER SER VAL HIS GLU SEQRES 1 D 130 THR PRO THR ASP LYS HIS GLY GLY SER ASP THR ARG CYS SEQRES 2 D 130 PRO LEU MET VAL LYS ILE LEU ASP ALA VAL LYS GLY THR SEQRES 3 D 130 PRO ALA GLY SER VAL ALA LEU LYS VAL SER GLN LYS THR SEQRES 4 D 130 ALA ASP GLY GLY TRP THR GLN ILE ALA THR GLY VAL THR SEQRES 5 D 130 ASP ALA THR GLY GLU ILE HIS ASN LEU ILE THR GLU GLN SEQRES 6 D 130 GLN PHE PRO ALA GLY VAL TYR ARG VAL GLU PHE ASP THR SEQRES 7 D 130 LYS ALA TYR TRP THR ASN GLN GLY SER THR PRO PHE HIS SEQRES 8 D 130 GLU VAL ALA GLU VAL VAL PHE ASP ALA HIS PRO GLU GLY SEQRES 9 D 130 HIS ARG HIS TYR THR LEU ALA LEU LEU LEU SER PRO PHE SEQRES 10 D 130 SER TYR THR THR THR ALA VAL VAL SER SER VAL HIS GLU HET SO4 A 701 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *361(H2 O) HELIX 1 1 ASP A 74 GLN A 82 1 9 HELIX 2 2 THR B 60 PHE B 64 5 5 HELIX 3 3 ASP B 74 GLN B 82 1 9 HELIX 4 4 ASP C 74 GLN C 82 1 9 HELIX 5 5 THR D 60 PHE D 64 5 5 HELIX 6 6 ASP D 74 GLY D 83 1 10 SHEET 1 A 8 THR A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O THR A 23 SHEET 3 A 8 TYR A 105 SER A 112 1 O TYR A 105 N MET A 13 SHEET 4 A 8 SER A 115 VAL A 121 -1 O SER A 115 N SER A 112 SHEET 5 A 8 SER B 115 SER B 123 -1 O THR B 118 N TYR A 116 SHEET 6 A 8 HIS B 104 SER B 112 -1 N HIS B 104 O SER B 123 SHEET 7 A 8 LEU B 12 ASP B 18 1 N MET B 13 O TYR B 105 SHEET 8 A 8 THR B 23 PRO B 24 -1 O THR B 23 N ASP B 18 SHEET 1 B 8 TRP A 41 VAL A 48 0 SHEET 2 B 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 B 8 GLY A 67 PHE A 73 -1 O VAL A 68 N LYS A 35 SHEET 4 B 8 HIS A 88 ALA A 97 -1 O ALA A 97 N GLY A 67 SHEET 5 B 8 HIS B 88 ALA B 97 -1 O GLU B 89 N VAL A 94 SHEET 6 B 8 GLY B 67 PHE B 73 -1 N GLY B 67 O ALA B 97 SHEET 7 B 8 ALA B 29 LYS B 35 -1 N LYS B 35 O VAL B 68 SHEET 8 B 8 TRP B 41 VAL B 48 -1 O ALA B 45 N VAL B 32 SHEET 1 C 8 THR C 23 PRO C 24 0 SHEET 2 C 8 LEU C 12 ASP C 18 -1 N ASP C 18 O THR C 23 SHEET 3 C 8 TYR C 105 SER C 112 1 O TYR C 105 N MET C 13 SHEET 4 C 8 SER C 115 VAL C 122 -1 O SER C 115 N SER C 112 SHEET 5 C 8 SER D 115 SER D 123 -1 O TYR D 116 N THR C 118 SHEET 6 C 8 HIS D 104 SER D 112 -1 N HIS D 104 O SER D 123 SHEET 7 C 8 LEU D 12 ASP D 18 1 N MET D 13 O TYR D 105 SHEET 8 C 8 THR D 23 PRO D 24 -1 O THR D 23 N ASP D 18 SHEET 1 D 8 TRP C 41 VAL C 48 0 SHEET 2 D 8 ALA C 29 LYS C 35 -1 N VAL C 32 O ALA C 45 SHEET 3 D 8 GLY C 67 PHE C 73 -1 O VAL C 68 N LYS C 35 SHEET 4 D 8 HIS C 88 ALA C 97 -1 O ALA C 97 N GLY C 67 SHEET 5 D 8 ALA D 91 ALA D 97 -1 O VAL D 94 N GLU C 89 SHEET 6 D 8 GLY D 67 PHE D 73 -1 N GLY D 67 O ALA D 97 SHEET 7 D 8 ALA D 29 LYS D 35 -1 N SER D 33 O ARG D 70 SHEET 8 D 8 TRP D 41 VAL D 48 -1 O GLY D 47 N LEU D 30 SITE 1 AC1 5 HIS A 102 SER A 123 SER A 124 HOH A 721 SITE 2 AC1 5 ARG B 103 CRYST1 58.497 58.497 140.710 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007107 0.00000