HEADER TRANSPORT PROTEIN 15-MAR-04 1SOQ TITLE CRYSTAL STRUCTURE OF THE TRANSTHYRETIN MUTANT A108Y/L110E SOLVED IN TITLE 2 SPACE GROUP C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PREALBUMIN, TBPA, TTR, ATTR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GREEK KEY BETA BARREL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.HORNBERG,A.OLOFSSON,T.ENEQVIST,E.LUNDGREN,A.E.SAUER-ERIKSSON REVDAT 6 23-AUG-23 1SOQ 1 REMARK REVDAT 5 27-OCT-21 1SOQ 1 SEQADV REVDAT 4 24-JUL-19 1SOQ 1 REMARK REVDAT 3 13-JUL-11 1SOQ 1 VERSN REVDAT 2 24-FEB-09 1SOQ 1 VERSN REVDAT 1 06-JUL-04 1SOQ 0 JRNL AUTH A.HORNBERG,A.OLOFSSON,T.ENEQVIST,E.LUNDGREN, JRNL AUTH 2 A.E.SAUER-ERIKSSON JRNL TITL THE BETA-STRAND D OF TRANSTHYRETIN TRAPPED IN TWO DISCRETE JRNL TITL 2 CONFORMATIONS JRNL REF BIOCHIM.BIOPHYS.ACTA V.1700 93 2004 JRNL REFN ISSN 0006-3002 JRNL PMID 15210129 JRNL DOI 10.1016/J.BBAPAP.2004.04.004 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1423 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3748 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3260 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5141 ; 1.251 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7603 ; 0.755 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 3.544 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 618 ;17.824 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4226 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 774 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 593 ; 0.214 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3004 ; 0.220 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 286 ; 0.125 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.033 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.150 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; 0.182 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.161 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2338 ; 0.736 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3822 ; 1.364 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1410 ; 1.721 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ; 2.856 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 60.0456 1.9984 4.2499 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.1709 REMARK 3 T33: 0.1385 T12: 0.0142 REMARK 3 T13: -0.0563 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 0.8783 L22: 2.0925 REMARK 3 L33: 1.2645 L12: -0.1904 REMARK 3 L13: -0.7625 L23: 0.4668 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.0438 S13: -0.1105 REMARK 3 S21: 0.2367 S22: -0.0812 S23: -0.2963 REMARK 3 S31: 0.1280 S32: 0.0437 S33: 0.0651 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6711 27.3233 -1.3052 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.1860 REMARK 3 T33: 0.2464 T12: 0.0363 REMARK 3 T13: 0.0058 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.0635 L22: 1.0871 REMARK 3 L33: 1.4142 L12: -0.1821 REMARK 3 L13: 0.2950 L23: -0.5139 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.0507 S13: 0.3284 REMARK 3 S21: 0.0547 S22: -0.1171 S23: 0.2318 REMARK 3 S31: -0.1335 S32: 0.0287 S33: 0.0451 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 125 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8678 29.3885 42.7744 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.1693 REMARK 3 T33: 0.1229 T12: -0.0312 REMARK 3 T13: -0.0400 T23: -0.0475 REMARK 3 L TENSOR REMARK 3 L11: 2.7064 L22: 0.4668 REMARK 3 L33: 1.2640 L12: 0.7173 REMARK 3 L13: -0.3759 L23: -0.4647 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.1067 S13: 0.2278 REMARK 3 S21: 0.0358 S22: 0.0677 S23: -0.0897 REMARK 3 S31: -0.1256 S32: 0.0588 S33: 0.0212 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 10 D 124 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5836 9.4366 39.9027 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.1613 REMARK 3 T33: 0.2124 T12: 0.0343 REMARK 3 T13: -0.0910 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 1.8131 L22: 0.4296 REMARK 3 L33: 2.4377 L12: -0.1293 REMARK 3 L13: 1.0346 L23: -0.4703 REMARK 3 S TENSOR REMARK 3 S11: 0.2456 S12: 0.1176 S13: -0.4439 REMARK 3 S21: 0.0563 S22: 0.0946 S23: -0.0527 REMARK 3 S31: 0.0807 S32: 0.2108 S33: -0.3401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1SOK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG550MME, AMMONIUM SULFATE, REMARK 280 SODIUM CITRATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.64350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.76200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.64350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.76200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.28700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.18058 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.76515 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 GLY C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 LYS C 9 REMARK 465 LYS C 126 REMARK 465 GLU C 127 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 THR D 3 REMARK 465 GLY D 4 REMARK 465 THR D 5 REMARK 465 GLY D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 LYS D 9 REMARK 465 PRO D 125 REMARK 465 LYS D 126 REMARK 465 GLU D 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 39 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 32.86 -95.92 REMARK 500 ASP A 39 15.76 56.25 REMARK 500 SER A 100 31.83 -141.37 REMARK 500 ASP C 39 13.88 88.45 REMARK 500 PHE C 44 -31.12 -130.95 REMARK 500 HIS D 90 -179.64 -171.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SOK RELATED DB: PDB REMARK 900 RELATED ID: 1F41 RELATED DB: PDB DBREF 1SOQ A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1SOQ B 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1SOQ C 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 1SOQ D 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 1SOQ TYR A 108 UNP P02766 ALA 128 ENGINEERED MUTATION SEQADV 1SOQ GLU A 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 1SOQ TYR B 108 UNP P02766 ALA 128 ENGINEERED MUTATION SEQADV 1SOQ GLU B 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 1SOQ TYR C 108 UNP P02766 ALA 128 ENGINEERED MUTATION SEQADV 1SOQ GLU C 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 1SOQ TYR D 108 UNP P02766 ALA 128 ENGINEERED MUTATION SEQADV 1SOQ GLU D 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE TYR ALA GLU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE TYR ALA GLU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 C 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 C 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 C 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 C 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 C 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 C 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 C 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 C 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 C 127 TYR THR ILE TYR ALA GLU LEU SER PRO TYR SER TYR SER SEQRES 10 C 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 D 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 D 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 D 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 D 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 D 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 D 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 D 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 D 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 D 127 TYR THR ILE TYR ALA GLU LEU SER PRO TYR SER TYR SER SEQRES 10 D 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU FORMUL 5 HOH *157(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 ASP B 74 LEU B 82 1 9 HELIX 3 3 THR C 75 LEU C 82 1 8 HELIX 4 4 ASP D 74 ALA D 81 1 8 SHEET 1 A 4 SER A 23 PRO A 24 0 SHEET 2 A 4 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 4 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 A 4 SER A 115 THR A 123 -1 O THR A 119 N TYR A 108 SHEET 1 B 4 TRP A 41 LYS A 48 0 SHEET 2 B 4 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 B 4 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 B 4 ALA A 91 ALA A 97 -1 O VAL A 93 N VAL A 71 SHEET 1 C 3 SER B 23 PRO B 24 0 SHEET 2 C 3 LEU B 12 ASP B 18 -1 N ASP B 18 O SER B 23 SHEET 3 C 3 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 D 4 SER B 23 PRO B 24 0 SHEET 2 D 4 LEU B 12 ASP B 18 -1 N ASP B 18 O SER B 23 SHEET 3 D 4 ARG B 104 SER B 112 1 O ALA B 109 N LEU B 17 SHEET 4 D 4 SER B 115 THR B 123 -1 O THR B 123 N ARG B 104 SHEET 1 E 4 TRP B 41 LYS B 48 0 SHEET 2 E 4 ALA B 29 LYS B 35 -1 N VAL B 32 O ALA B 45 SHEET 3 E 4 GLY B 67 ILE B 73 -1 O GLU B 72 N HIS B 31 SHEET 4 E 4 ALA B 91 ALA B 97 -1 O VAL B 93 N VAL B 71 SHEET 1 F 8 SER C 23 PRO C 24 0 SHEET 2 F 8 LEU C 12 ASP C 18 -1 N ASP C 18 O SER C 23 SHEET 3 F 8 ARG C 104 SER C 112 1 O ILE C 107 N MET C 13 SHEET 4 F 8 SER C 115 THR C 123 -1 O THR C 119 N TYR C 108 SHEET 5 F 8 SER D 115 THR D 123 -1 O TYR D 116 N THR C 118 SHEET 6 F 8 ARG D 104 SER D 112 -1 N TYR D 108 O THR D 119 SHEET 7 F 8 LEU D 12 ASP D 18 1 N LEU D 17 O LEU D 111 SHEET 8 F 8 SER D 23 PRO D 24 -1 O SER D 23 N ASP D 18 SHEET 1 G 8 TRP C 41 LYS C 48 0 SHEET 2 G 8 ALA C 29 LYS C 35 -1 N VAL C 32 O ALA C 45 SHEET 3 G 8 GLY C 67 ASP C 74 -1 O GLU C 72 N HIS C 31 SHEET 4 G 8 HIS C 88 ALA C 97 -1 O ALA C 91 N ILE C 73 SHEET 5 G 8 ALA D 91 ALA D 97 -1 O VAL D 94 N GLU C 89 SHEET 6 G 8 GLY D 67 ILE D 73 -1 N VAL D 71 O VAL D 93 SHEET 7 G 8 ALA D 29 LYS D 35 -1 N HIS D 31 O GLU D 72 SHEET 8 G 8 TRP D 41 LYS D 48 -1 O ALA D 45 N VAL D 32 CRYST1 101.287 67.524 80.978 90.00 112.59 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009873 0.000000 0.004108 0.00000 SCALE2 0.000000 0.014810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013375 0.00000