HEADER MEMBRANE PROTEIN 15-MAR-04 1SOR TITLE AQUAPORIN-0 MEMBRANE JUNCTIONS REVEAL THE STRUCTURE OF A CLOSED WATER TITLE 2 PORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AQUAPORIN-0; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MIP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OVIS ARIES; SOURCE 3 ORGANISM_COMMON: SHEEP; SOURCE 4 ORGANISM_TAXID: 9940 KEYWDS MEMBRANE JUNCTION, WATER CHANNEL, MEMBRANE PROTEIN EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR T.GONEN,P.SLIZ,J.KISTLER,Y.CHENG,T.WALZ REVDAT 6 23-AUG-23 1SOR 1 REMARK REVDAT 5 31-JAN-18 1SOR 1 REMARK REVDAT 4 11-OCT-17 1SOR 1 REMARK REVDAT 3 13-JUL-11 1SOR 1 VERSN REVDAT 2 24-FEB-09 1SOR 1 VERSN REVDAT 1 11-MAY-04 1SOR 0 JRNL AUTH T.GONEN,P.SLIZ,J.KISTLER,Y.CHENG,T.WALZ JRNL TITL AQUAPORIN-0 MEMBRANE JUNCTIONS REVEAL THE STRUCTURE OF A JRNL TITL 2 CLOSED WATER PORE JRNL REF NATURE V. 429 193 2004 JRNL REFN ISSN 0028-0836 JRNL PMID 15141214 JRNL DOI 10.1038/NATURE02503 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2281725.960 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 6635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.299 REMARK 3 FREE R VALUE : 0.338 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.800 REMARK 3 FREE R VALUE TEST SET COUNT : 718 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 806 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 88 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.038 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.27000 REMARK 3 B22 (A**2) : -13.27000 REMARK 3 B33 (A**2) : 26.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM SIGMAA (A) : 0.70 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.58 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.71 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 17.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.160 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.940 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 74.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021881. REMARK 240 REMARK 240 EXPERIMENT TYPE : SINGLE-CRYSTAL ELECTRON DIFFRACTION DATE OF REMARK 240 DATA COLLECTION : 28-JAN-2003 TEMPERATURE (KELVIN) : 100.0 PH : REMARK 240 6.00 NUMBER OF CRYSTALS USED : 131 RADIATION SOURCE : ELECTRON REMARK 240 MICROSCOPE X-RAY GENERATOR MODEL : TECNAI T20 OPTICS : CRYSTALS REMARK 240 TILTED TO 0, 20, 45, 60 AND 70 DEGREES DETECTOR TYPE : CCD REMARK 240 DETECTOR MANUFACTURER : GATAN 2K X 2K INTENSITY-INTEGRATION REMARK 240 SOFTWARE : DIGITAL MICROGRAPH 3.7.4 DATA SCALING SOFTWARE : MRC REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 6635 RESOLUTION RANGE HIGH (A) : REMARK 240 3.000 RESOLUTION RANGE LOW (A) : 30.000 VERALL. COMPLETENESS FOR REMARK 240 RANGE (%) : 88.0 DATA REDUNDANCY : 6.700 IN THE HIGHEST REMARK 240 RESOLUTION SHELL. HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : REMARK 240 3.00 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 COMPLETENESS REMARK 240 FOR SHELL (%) : 82.0 DATA REDUNDANCY IN SHELL : 4.50 R MERGE FOR REMARK 240 SHELL (I) : 0.54000 METHOD USED TO DETERMINE THE STRUCTURE: REMARK 240 MOLECULAR REPLACEMENT SOFTWARE USED: MOLREP 7.4.03 STARTING REMARK 240 MODEL: PDB ENTRY 1J4N REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 31700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -323.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 SER A 6 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 32 123.73 -20.31 REMARK 500 ARG A 33 97.38 -64.89 REMARK 500 TRP A 34 22.45 -157.34 REMARK 500 PRO A 36 81.91 -31.04 REMARK 500 HIS A 40 -7.41 -49.59 REMARK 500 SER A 63 115.26 -179.92 REMARK 500 ALA A 65 20.18 91.38 REMARK 500 VAL A 67 -49.02 69.22 REMARK 500 SER A 79 75.18 63.54 REMARK 500 GLN A 80 54.46 176.18 REMARK 500 MET A 81 154.22 178.68 REMARK 500 ALA A 117 46.52 70.55 REMARK 500 ASN A 119 95.95 -48.42 REMARK 500 PRO A 123 -72.66 -14.67 REMARK 500 ASP A 150 100.28 -46.88 REMARK 500 ARG A 152 -45.78 -29.62 REMARK 500 SER A 159 88.96 -61.86 REMARK 500 ALA A 181 117.92 56.77 REMARK 500 MET A 183 13.19 48.85 REMARK 500 LEU A 194 6.65 -67.59 REMARK 500 THR A 195 53.26 -157.28 REMARK 500 ARG A 196 80.92 0.72 REMARK 500 ASP A 220 -79.45 -86.85 REMARK 500 LEU A 222 -102.80 -123.92 REMARK 500 LEU A 223 -94.01 -11.60 REMARK 500 LEU A 227 61.08 -67.98 REMARK 500 LYS A 228 -103.43 -145.99 REMARK 500 LEU A 234 11.12 -63.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN HAS BEEN DEPOSITED TO GENE BANK. REMARK 999 THE ACCESSION NUMBER IS AY573927. DBREF 1SOR A 5 239 UNP Q6J8I9 Q6J8I9_SHEEP 5 239 SEQRES 1 A 235 ARG SER ALA SER PHE TRP ARG ALA ILE PHE ALA GLU PHE SEQRES 2 A 235 PHE ALA THR LEU PHE TYR VAL PHE PHE GLY LEU GLY ALA SEQRES 3 A 235 SER LEU ARG TRP ALA PRO GLY PRO LEU HIS VAL LEU GLN SEQRES 4 A 235 VAL ALA LEU ALA PHE GLY LEU ALA LEU ALA THR LEU VAL SEQRES 5 A 235 GLN ALA VAL GLY HIS ILE SER GLY ALA HIS VAL ASN PRO SEQRES 6 A 235 ALA VAL THR PHE ALA PHE LEU VAL GLY SER GLN MET SER SEQRES 7 A 235 LEU LEU ARG ALA ILE CYS TYR VAL VAL ALA GLN LEU LEU SEQRES 8 A 235 GLY ALA VAL ALA GLY ALA ALA VAL LEU TYR SER VAL THR SEQRES 9 A 235 PRO PRO ALA VAL ARG GLY ASN LEU ALA LEU ASN THR LEU SEQRES 10 A 235 HIS PRO GLY VAL SER VAL GLY GLN ALA THR ILE VAL GLU SEQRES 11 A 235 ILE PHE LEU THR LEU GLN PHE VAL LEU CYS ILE PHE ALA SEQRES 12 A 235 THR TYR ASP GLU ARG ARG ASN GLY ARG LEU GLY SER VAL SEQRES 13 A 235 ALA LEU ALA VAL GLY PHE SER LEU THR LEU GLY HIS LEU SEQRES 14 A 235 PHE GLY MET TYR TYR THR GLY ALA GLY MET ASN PRO ALA SEQRES 15 A 235 ARG SER PHE ALA PRO ALA ILE LEU THR ARG ASN PHE THR SEQRES 16 A 235 ASN HIS TRP VAL TYR TRP VAL GLY PRO VAL ILE GLY ALA SEQRES 17 A 235 GLY LEU GLY SER LEU LEU TYR ASP PHE LEU LEU PHE PRO SEQRES 18 A 235 ARG LEU LYS SER VAL SER GLU ARG LEU SER ILE LEU LYS SEQRES 19 A 235 GLY HELIX 1 1 ARG A 5 LEU A 32 1 28 HELIX 2 2 HIS A 40 SER A 63 1 24 HELIX 3 3 ASN A 68 GLY A 78 1 11 HELIX 4 4 SER A 82 THR A 108 1 27 HELIX 5 5 SER A 126 ASP A 150 1 25 HELIX 6 6 SER A 159 GLY A 180 1 22 HELIX 7 7 ASN A 184 LEU A 194 1 11 HELIX 8 8 ASN A 200 LEU A 222 1 23 HELIX 9 9 SER A 229 LEU A 234 1 6 HELIX 10 10 SER A 235 GLY A 239 5 5 CRYST1 65.500 65.500 160.000 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006250 0.00000