HEADER IMMUNOGLOBULIN-BINDING PROTEIN 29-JUN-96 1SPZ OBSLTE 21-APR-00 1SPZ 2SPZ TITLE STAPHYLOCOCCAL PROTEIN A, Z-DOMAIN, NMR, 10 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAPHYLOCOCCAL PROTEIN A; COMPND 3 CHAIN: Z; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: Z-DOMAIN ANALOG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 4 EXPRESSION_SYSTEM_PLASMID: PRIT28NZ; SOURCE 5 EXPRESSION_SYSTEM_GENE: IGG BINDING DOMAIN Z KEYWDS THREE-HELICAL BUNDLE STRUCTURE, IMMUNOGLOBULIN-BINDING KEYWDS 2 PROTEIN EXPDTA NMR, 10 STRUCTURES AUTHOR G.T.MONTELIONE,M.TASHIRO,R.TEJERO,B.A.LYONS REVDAT 2 21-APR-00 1SPZ 1 OBSLTE REVDAT 1 11-JAN-97 1SPZ 0 JRNL AUTH L.JENDEBERG,M.TASHIRO,R.TEJERO,B.A.LYONS,M.UHLEN, JRNL AUTH 2 G.T.MONTELIONE,B.NILSSON JRNL TITL THE MECHANISM OF BINDING STAPHYLOCOCCAL PROTEIN A JRNL TITL 2 TO IMMUNOGLOBIN G DOES NOT INVOLVE HELIX UNWINDING JRNL REF BIOCHEMISTRY V. 35 22 1996 JRNL REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.TASHIRO,G.T.MONTELIONE REMARK 1 TITL STRUCTURES OF BACTERIAL IMMUNOGLOBULIN-BINDING REMARK 1 TITL 2 DOMAINS AND THEIR COMPLEXES WITH IMMUNOGLOBULIN REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 5 471 1995 REMARK 1 REFN ASTM COSBEF UK ISSN 0959-440X REMARK 1 REFERENCE 2 REMARK 1 AUTH B.A.LYONS,M.TASHIRO,L.CEDERGREN,B.NILSSON, REMARK 1 AUTH 2 G.T.MONTELIONE REMARK 1 TITL AN IMPROVED STRATEGY FOR DETERMINING RESONANCE REMARK 1 TITL 2 ASSIGNMENTS FOR ISOTOPICALLY ENRICHED PROTEINS AND REMARK 1 TITL 3 ITS APPLICATION TO AN ENGINEERED DOMAIN OF REMARK 1 TITL 4 STAPHYLOCOCCAL PROTEIN A REMARK 1 REF BIOCHEMISTRY V. 32 7839 1993 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CONGEN REMARK 3 AUTHORS : BRUCCOLERI,KARPLUS NUMBER OF NON-HYDROGEN ATOMS REMARK 3 USED IN REFINEMENT. PROTEIN ATOMS : 469 NUCLEIC REMARK 3 ACID ATOMS : 0 HETEROGEN ATOMS : 0 SOLVENT ATOMS REMARK 3 : 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK: D. BASSOLINO-KLIMAS ET AL. REMARK 3 (1996) PROTEIN SCIENCE 5: 593 - 603 R.E. BRUCCOLERI, M. REMARK 3 KARPLUS (1987) BIOPOLYMERS 26, 137 - 168 DIANA (P. GUNTERT, W. REMARK 3 BRAUN, K. WUTHRICH) ALSO WAS USED. TOTAL NUMBER OF PROTEIN REMARK 3 ATOMS USED IN REFINEMENT INCLUDING HYDROGENS: 926 REMARK 4 REMARK 4 1SPZ COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 +/- 0.1 REMARK 210 PH : 6.5 +/-0.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE REMARKS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : MODIFIED UNITY 500 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA, CONGEN REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMUM VALUE OF TARGET REMARK 210 FUNCTION (INCLUDING VIOLATIONS REMARK 210 OF EXPERIMENTAL CONSTRAINTS REMARK 210 AND CHARMM CONFORMATIONAL REMARK 210 ENERGY) REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D NOESY-[15N] REMARK 210 HSQC, 2D [N15]HSQC-J,3D (H)CC(CO)NH-TOCSY, 3D (H)CCNH-TOCSY, REMARK 210 3D H(CCCO)NH-TOCSY, 3D H(CC)NH-TOCSY, 3D (H)CNH, 3D H(C)NH 3D REMARK 210 (H)C(CO)NH, 3D H(CCO)NH, 3D CBCANH, 3D CBCA(CO)NH, 3D HNCO REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 MET Z -13 REMARK 465 1 LYS Z -12 REMARK 465 1 ALA Z -11 REMARK 465 1 ILE Z -10 REMARK 465 1 PHE Z -9 REMARK 465 1 VAL Z -8 REMARK 465 1 LEU Z -7 REMARK 465 1 ASN Z -6 REMARK 465 1 ALA Z -5 REMARK 465 1 GLN Z -4 REMARK 465 1 HIS Z -3 REMARK 465 1 ASP Z -2 REMARK 465 1 GLU Z -1 REMARK 465 1 ALA Z 0 REMARK 465 2 MET Z -13 REMARK 465 2 LYS Z -12 REMARK 465 2 ALA Z -11 REMARK 465 2 ILE Z -10 REMARK 465 2 PHE Z -9 REMARK 465 2 VAL Z -8 REMARK 465 2 LEU Z -7 REMARK 465 2 ASN Z -6 REMARK 465 2 ALA Z -5 REMARK 465 2 GLN Z -4 REMARK 465 2 HIS Z -3 REMARK 465 2 ASP Z -2 REMARK 465 2 GLU Z -1 REMARK 465 2 ALA Z 0 REMARK 465 3 MET Z -13 REMARK 465 3 LYS Z -12 REMARK 465 3 ALA Z -11 REMARK 465 3 ILE Z -10 REMARK 465 3 PHE Z -9 REMARK 465 3 VAL Z -8 REMARK 465 3 LEU Z -7 REMARK 465 3 ASN Z -6 REMARK 465 3 ALA Z -5 REMARK 465 3 GLN Z -4 REMARK 465 3 HIS Z -3 REMARK 465 3 ASP Z -2 REMARK 465 3 GLU Z -1 REMARK 465 3 ALA Z 0 REMARK 465 4 MET Z -13 REMARK 465 4 LYS Z -12 REMARK 465 4 ALA Z -11 REMARK 465 4 ILE Z -10 REMARK 465 4 PHE Z -9 REMARK 465 4 VAL Z -8 REMARK 465 4 LEU Z -7 REMARK 465 4 ASN Z -6 REMARK 465 4 ALA Z -5 REMARK 465 4 GLN Z -4 REMARK 465 4 HIS Z -3 REMARK 465 4 ASP Z -2 REMARK 465 4 GLU Z -1 REMARK 465 4 ALA Z 0 REMARK 465 5 MET Z -13 REMARK 465 5 LYS Z -12 REMARK 465 5 ALA Z -11 REMARK 465 5 ILE Z -10 REMARK 465 5 PHE Z -9 REMARK 465 5 VAL Z -8 REMARK 465 5 LEU Z -7 REMARK 465 5 ASN Z -6 REMARK 465 5 ALA Z -5 REMARK 465 5 GLN Z -4 REMARK 465 5 HIS Z -3 REMARK 465 5 ASP Z -2 REMARK 465 5 GLU Z -1 REMARK 465 5 ALA Z 0 REMARK 465 6 MET Z -13 REMARK 465 6 LYS Z -12 REMARK 465 6 ALA Z -11 REMARK 465 6 ILE Z -10 REMARK 465 6 PHE Z -9 REMARK 465 6 VAL Z -8 REMARK 465 6 LEU Z -7 REMARK 465 6 ASN Z -6 REMARK 465 6 ALA Z -5 REMARK 465 6 GLN Z -4 REMARK 465 6 HIS Z -3 REMARK 465 6 ASP Z -2 REMARK 465 6 GLU Z -1 REMARK 465 6 ALA Z 0 REMARK 465 7 MET Z -13 REMARK 465 7 LYS Z -12 REMARK 465 7 ALA Z -11 REMARK 465 7 ILE Z -10 REMARK 465 7 PHE Z -9 REMARK 465 7 VAL Z -8 REMARK 465 7 LEU Z -7 REMARK 465 7 ASN Z -6 REMARK 465 7 ALA Z -5 REMARK 465 7 GLN Z -4 REMARK 465 7 HIS Z -3 REMARK 465 7 ASP Z -2 REMARK 465 7 GLU Z -1 REMARK 465 7 ALA Z 0 REMARK 465 8 MET Z -13 REMARK 465 8 LYS Z -12 REMARK 465 8 ALA Z -11 REMARK 465 8 ILE Z -10 REMARK 465 8 PHE Z -9 REMARK 465 8 VAL Z -8 REMARK 465 8 LEU Z -7 REMARK 465 8 ASN Z -6 REMARK 465 8 ALA Z -5 REMARK 465 8 GLN Z -4 REMARK 465 8 HIS Z -3 REMARK 465 8 ASP Z -2 REMARK 465 8 GLU Z -1 REMARK 465 8 ALA Z 0 REMARK 465 9 MET Z -13 REMARK 465 9 LYS Z -12 REMARK 465 9 ALA Z -11 REMARK 465 9 ILE Z -10 REMARK 465 9 PHE Z -9 REMARK 465 9 VAL Z -8 REMARK 465 9 LEU Z -7 REMARK 465 9 ASN Z -6 REMARK 465 9 ALA Z -5 REMARK 465 9 GLN Z -4 REMARK 465 9 HIS Z -3 REMARK 465 9 ASP Z -2 REMARK 465 9 GLU Z -1 REMARK 465 9 ALA Z 0 REMARK 465 10 MET Z -13 REMARK 465 10 LYS Z -12 REMARK 465 10 ALA Z -11 REMARK 465 10 ILE Z -10 REMARK 465 10 PHE Z -9 REMARK 465 10 VAL Z -8 REMARK 465 10 LEU Z -7 REMARK 465 10 ASN Z -6 REMARK 465 10 ALA Z -5 REMARK 465 10 GLN Z -4 REMARK 465 10 HIS Z -3 REMARK 465 10 ASP Z -2 REMARK 465 10 GLU Z -1 REMARK 465 10 ALA Z 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ILE Z 31 CG1 - CB - CG2 ANGL. DEV. = 22.5 DEGREES REMARK 500 4 ILE Z 31 CG1 - CB - CG2 ANGL. DEV. = 24.4 DEGREES REMARK 500 8 GLN Z 9 CA - C - N ANGL. DEV. = 23.5 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU Z 25 -37.96 81.15 REMARK 500 2 ASN Z 3 -51.11 73.17 REMARK 500 2 GLU Z 24 -38.92 63.44 REMARK 500 3 GLU Z 24 -37.21 66.48 REMARK 500 4 ASP Z 2 -60.50 66.07 REMARK 500 4 ASN Z 3 -35.95 70.85 REMARK 500 4 PHE Z 5 -79.83 49.14 REMARK 500 5 ASP Z 2 -115.12 38.08 REMARK 500 5 ASN Z 23 -45.31 53.74 REMARK 500 5 GLU Z 24 -104.69 -157.32 REMARK 500 6 ASN Z 3 -112.56 47.78 REMARK 500 6 ASN Z 6 -35.14 52.71 REMARK 500 6 ASP Z 37 73.36 143.06 REMARK 500 6 SER Z 39 -55.55 71.98 REMARK 500 7 ASP Z 2 -107.74 -164.39 REMARK 500 7 GLU Z 24 -55.33 67.18 REMARK 500 8 ASN Z 6 -56.59 90.24 REMARK 500 8 ASP Z 37 88.32 116.33 REMARK 500 9 LYS Z 4 -89.37 60.74 REMARK 999 REMARK 999 SEQUENCE REMARK 999 1SPZ Z SWS P38507 1 - 211 NOT IN ATOMS LIST REMARK 999 1SPZ Z SWS P38507 270 - 508 NOT IN ATOMS LIST REMARK 999 REMARK 999 REFERENCE REMARK 999 REFERENCE: SEQUENCE DETERMINED BY NMR: B.A. LYONS ET AL. REMARK 999 BIOCHEMISTRY 32: 7839 - 7845, 1993. DBREF 1SPZ Z 1 58 UNP P38507 SPA2_STAAU 212 269 SEQADV 1SPZ VAL Z 1 UNP P38507 ALA 212 ENGINEERED SEQADV 1SPZ ALA Z 29 UNP P38507 GLY 240 ENGINEERED SEQRES 1 Z 72 MET LYS ALA ILE PHE VAL LEU ASN ALA GLN HIS ASP GLU SEQRES 2 Z 72 ALA VAL ASP ASN LYS PHE ASN LYS GLU GLN GLN ASN ALA SEQRES 3 Z 72 PHE TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 4 Z 72 GLN ARG ASN ALA PHE ILE GLN SER LEU LYS ASP ASP PRO SEQRES 5 Z 72 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 6 Z 72 ASN ASP ALA GLN ALA PRO LYS HELIX 1 1 LYS Z 7 HIS Z 18 1 12 HELIX 2 2 GLU Z 25 ASP Z 36 1 12 HELIX 3 3 SER Z 41 ALA Z 54 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1