HEADER RIBOSOME 19-MAR-04 1SQR TITLE SOLUTION STRUCTURE OF THE 50S RIBOSOMAL PROTEIN L35AE FROM PYROCOCCUS TITLE 2 FURIOSUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PFR48. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L35AE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: RPL35AE, PF1872; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS PFR48, AUTOSTRUCTURE, RIBOSOMAL PROTEIN, NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, BETA-BARREL, NESG, STRUCTURAL GENOMICS, PSI, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, RIBOSOME EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.A.SNYDER,J.M.ARAMINI,Y.J.HUANG,R.XIAO,J.R.CORT,R.SHASTRY,L.C.MA, AUTHOR 2 J.LIU,B.ROST,T.B.ACTON,M.A.KENNEDY,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 02-MAR-22 1SQR 1 REMARK SEQADV REVDAT 3 24-FEB-09 1SQR 1 VERSN REVDAT 2 25-JAN-05 1SQR 1 AUTHOR REVDAT 1 16-NOV-04 1SQR 0 JRNL AUTH D.A.SNYDER,J.M.ARAMINI,Y.J.HUANG,R.XIAO,J.R.CORT,R.SHASTRY, JRNL AUTH 2 L.C.MA,J.LIU,B.ROST,T.B.ACTON,M.A.KENNEDY,G.T.MONTELIONE JRNL TITL SOLUTION STRUCTURE OF THE 50S RIBOSOMAL PROTEIN L35AE FROM JRNL TITL 2 PYROCOCCUS FURIOSUS: NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET PFR48 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.0.6, AUTOSTRUCTURE 2.0.0 REMARK 3 AUTHORS : SCHWIETERS, ET AL. (X-PLOR), HUANG AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1157 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 RESTRAINTS, 177 DIHEDRAL ANGLE RESTRAINTS, AND 32 HYDROGEN BOND REMARK 3 RESTRAINTS. (14.4 CONSTRAINTS PER RESIDUE; 6.1 LONG-RANGE REMARK 3 RESTRAINTS PER RESIDUE). STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING AUTOSTRUCTURE (XPLOR). THE UNSTRUCTURED 8 REMARK 3 RESIDUE C-TERMINAL TAG (LEHHHHHH) WAS INCLUDED IN THE STRUCTURE REMARK 3 CALCULATIONS BUT IS OMITTED FROM THIS DEPOSITION. REMARK 4 REMARK 4 1SQR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021928. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.07 MM PFR48 U-15N,13C 20 MM REMARK 210 MES, 100 MM NACL, 5 MM CACL2, 10 REMARK 210 MM DTT, 0.02% NAN3, PH 6.5; 1.07 REMARK 210 MM PFR48 U-15N,13C 20 MM MES, REMARK 210 100 MM NACL, 5 MM CACL2, 10 MM REMARK 210 DTT, 0.02% NAN3, PH 6.5; 0.1 MM REMARK 210 PFR48 U-15N,5%-13C 20 MM MES, REMARK 210 100 MM NACL, 5 MM CACL2, 10 MM REMARK 210 DTT, 0.02% NAN3, PH 6.5; 0.5 MM REMARK 210 PFR48 U-15N 20 MM MES, 100 MM REMARK 210 NACL, 5 MM CACL2, 10 MM DTT, REMARK 210 0.02% NAN3, PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 13C-NOESY (ALIPHATIC), HCCH REMARK 210 -COSY; 3D 13C-NOESY (ALIPHATIC AND AROMATIC), 13C,1H-HSQC; 4D_ REMARK 210 13C-SEPARATED_NOESY; 3D-TOCSYS; H/D EXCHANGE; 3D 15N-NOESY, REMARK 210 BACKBONE TR EXPERIMENTS; HIGH-RESOLUTION/NON-CONSTANT-TIME 13C, REMARK 210 1H-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, NMRPIPE 2.1, SPARKY REMARK 210 3.106, PDBSTAT 3.32, HYPER 3.2, REMARK 210 AUTOASSIGN 1.9, TALOS 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. AUTOMATIC BACKBONE RESONANCE ASSIGNMENTS WERE MADE REMARK 210 USING AUTOASSIGN. MANUAL SIDE CHAIN ASSIGNMENTS. AUTOMATIC NOESY REMARK 210 ASSIGNMENTS AS WELL AS DISTANCE AND HYDROGEN BOND RESTRAINTS REMARK 210 WERE DETERMINED USING AUTOSTRUCTURE. DIHEDRAL ANGLE RESTRAINTS REMARK 210 WERE DETERMINED USING HYPER AND TALOS. BACKBONE DIHEDRAL ANGLES REMARK 210 FOR RESIDUES 1, 13-20, 26-27, 39-40, 47-51, 54, 63-66 AND 73-79 REMARK 210 ARE NOT WELL-DEFINED [S(PHI) + S(PSI) < 1.8] IN THIS SOLUTION REMARK 210 NMR STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 LEU A 88 REMARK 465 GLU A 89 REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 8 -61.32 -109.86 REMARK 500 1 ARG A 12 62.51 -100.16 REMARK 500 1 SER A 13 117.63 -38.80 REMARK 500 1 GLU A 15 -162.35 -58.33 REMARK 500 1 GLN A 17 16.71 -158.47 REMARK 500 1 HIS A 18 -5.25 -173.79 REMARK 500 1 ASN A 19 173.66 68.30 REMARK 500 1 LEU A 27 -85.32 -19.33 REMARK 500 1 ASP A 28 -91.86 -93.10 REMARK 500 1 PRO A 48 178.11 -47.96 REMARK 500 1 VAL A 58 -63.46 -99.00 REMARK 500 1 THR A 63 -94.85 51.10 REMARK 500 1 LYS A 64 50.17 -94.50 REMARK 500 1 GLN A 78 95.07 47.66 REMARK 500 1 ILE A 86 73.49 -109.40 REMARK 500 2 ARG A 12 59.31 -91.66 REMARK 500 2 SER A 13 -82.74 56.09 REMARK 500 2 LYS A 14 -170.84 63.22 REMARK 500 2 GLU A 15 -179.49 -55.34 REMARK 500 2 ASN A 16 92.86 47.35 REMARK 500 2 GLN A 17 133.00 -37.91 REMARK 500 2 HIS A 18 11.13 -176.41 REMARK 500 2 ASN A 19 171.29 53.70 REMARK 500 2 PRO A 26 72.41 -59.57 REMARK 500 2 LEU A 27 -116.33 51.99 REMARK 500 2 ASP A 28 -92.78 -74.00 REMARK 500 2 ASN A 30 47.40 -92.29 REMARK 500 2 SER A 49 39.97 -69.01 REMARK 500 2 THR A 63 -88.11 51.55 REMARK 500 2 LYS A 64 51.74 -90.18 REMARK 500 2 ALA A 66 -177.89 -68.71 REMARK 500 2 LYS A 73 -77.72 -81.55 REMARK 500 2 ALA A 79 23.80 -163.10 REMARK 500 2 ILE A 86 72.46 -107.97 REMARK 500 3 ARG A 12 61.11 -104.57 REMARK 500 3 SER A 13 60.18 36.65 REMARK 500 3 LYS A 14 -80.09 -38.78 REMARK 500 3 GLU A 15 -88.90 -66.10 REMARK 500 3 ASN A 16 102.69 -163.89 REMARK 500 3 HIS A 18 -59.25 -169.69 REMARK 500 3 ASN A 19 -32.59 166.72 REMARK 500 3 PRO A 26 87.54 -61.44 REMARK 500 3 LEU A 27 -133.82 36.32 REMARK 500 3 ASP A 28 -92.73 -44.04 REMARK 500 3 ASN A 30 41.69 -82.60 REMARK 500 3 ILE A 39 -19.88 -48.52 REMARK 500 3 SER A 49 5.07 -69.66 REMARK 500 3 THR A 63 156.41 55.95 REMARK 500 3 LYS A 64 -21.05 68.98 REMARK 500 3 ALA A 66 147.57 176.38 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 2 0.23 SIDE CHAIN REMARK 500 1 ARG A 12 0.31 SIDE CHAIN REMARK 500 1 ARG A 59 0.21 SIDE CHAIN REMARK 500 1 ARG A 68 0.26 SIDE CHAIN REMARK 500 1 ARG A 70 0.21 SIDE CHAIN REMARK 500 2 ARG A 2 0.30 SIDE CHAIN REMARK 500 2 ARG A 11 0.24 SIDE CHAIN REMARK 500 2 ARG A 12 0.31 SIDE CHAIN REMARK 500 2 ARG A 32 0.20 SIDE CHAIN REMARK 500 2 ARG A 41 0.11 SIDE CHAIN REMARK 500 2 ARG A 59 0.24 SIDE CHAIN REMARK 500 2 ARG A 68 0.13 SIDE CHAIN REMARK 500 2 ARG A 70 0.17 SIDE CHAIN REMARK 500 3 ARG A 2 0.12 SIDE CHAIN REMARK 500 3 ARG A 11 0.20 SIDE CHAIN REMARK 500 3 ARG A 12 0.28 SIDE CHAIN REMARK 500 3 ARG A 32 0.16 SIDE CHAIN REMARK 500 3 ARG A 41 0.20 SIDE CHAIN REMARK 500 3 ARG A 59 0.31 SIDE CHAIN REMARK 500 3 ARG A 68 0.27 SIDE CHAIN REMARK 500 3 ARG A 70 0.18 SIDE CHAIN REMARK 500 4 ARG A 2 0.27 SIDE CHAIN REMARK 500 4 ARG A 11 0.15 SIDE CHAIN REMARK 500 4 ARG A 12 0.21 SIDE CHAIN REMARK 500 4 ARG A 32 0.30 SIDE CHAIN REMARK 500 4 ARG A 41 0.22 SIDE CHAIN REMARK 500 4 ARG A 59 0.23 SIDE CHAIN REMARK 500 4 ARG A 68 0.18 SIDE CHAIN REMARK 500 4 ARG A 70 0.13 SIDE CHAIN REMARK 500 5 ARG A 2 0.31 SIDE CHAIN REMARK 500 5 ARG A 11 0.30 SIDE CHAIN REMARK 500 5 ARG A 12 0.09 SIDE CHAIN REMARK 500 5 ARG A 32 0.24 SIDE CHAIN REMARK 500 5 ARG A 41 0.30 SIDE CHAIN REMARK 500 5 ARG A 68 0.31 SIDE CHAIN REMARK 500 5 ARG A 70 0.20 SIDE CHAIN REMARK 500 6 ARG A 2 0.31 SIDE CHAIN REMARK 500 6 ARG A 11 0.29 SIDE CHAIN REMARK 500 6 ARG A 12 0.22 SIDE CHAIN REMARK 500 6 ARG A 32 0.18 SIDE CHAIN REMARK 500 6 ARG A 41 0.16 SIDE CHAIN REMARK 500 6 ARG A 59 0.31 SIDE CHAIN REMARK 500 6 ARG A 68 0.15 SIDE CHAIN REMARK 500 6 ARG A 70 0.10 SIDE CHAIN REMARK 500 7 ARG A 2 0.10 SIDE CHAIN REMARK 500 7 ARG A 11 0.24 SIDE CHAIN REMARK 500 7 ARG A 32 0.17 SIDE CHAIN REMARK 500 7 ARG A 41 0.31 SIDE CHAIN REMARK 500 7 ARG A 59 0.31 SIDE CHAIN REMARK 500 7 ARG A 68 0.24 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 73 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFR48 RELATED DB: TARGETDB DBREF 1SQR A 1 87 UNP Q8TZV6 RL35A_PYRFU 1 87 SEQADV 1SQR LEU A 88 UNP Q8TZV6 CLONING ARTIFACT SEQADV 1SQR GLU A 89 UNP Q8TZV6 CLONING ARTIFACT SEQADV 1SQR HIS A 90 UNP Q8TZV6 CLONING ARTIFACT SEQADV 1SQR HIS A 91 UNP Q8TZV6 CLONING ARTIFACT SEQADV 1SQR HIS A 92 UNP Q8TZV6 CLONING ARTIFACT SEQADV 1SQR HIS A 93 UNP Q8TZV6 CLONING ARTIFACT SEQADV 1SQR HIS A 94 UNP Q8TZV6 CLONING ARTIFACT SEQADV 1SQR HIS A 95 UNP Q8TZV6 CLONING ARTIFACT SEQRES 1 A 95 MET ARG ILE LYS GLY VAL VAL LEU SER TYR ARG ARG SER SEQRES 2 A 95 LYS GLU ASN GLN HIS ASN ASN VAL MET ILE ILE LYS PRO SEQRES 3 A 95 LEU ASP VAL ASN SER ARG GLU GLU ALA SER LYS LEU ILE SEQRES 4 A 95 GLY ARG LEU VAL LEU TRP LYS SER PRO SER GLY LYS ILE SEQRES 5 A 95 LEU LYS GLY LYS ILE VAL ARG VAL HIS GLY THR LYS GLY SEQRES 6 A 95 ALA VAL ARG ALA ARG PHE GLU LYS GLY LEU PRO GLY GLN SEQRES 7 A 95 ALA LEU GLY ASP TYR VAL GLU ILE VAL LEU GLU HIS HIS SEQRES 8 A 95 HIS HIS HIS HIS HELIX 1 1 SER A 31 ILE A 39 1 9 SHEET 1 A 6 LEU A 42 TRP A 45 0 SHEET 2 A 6 LEU A 53 VAL A 60 -1 O LEU A 53 N TRP A 45 SHEET 3 A 6 VAL A 67 ARG A 70 -1 O ARG A 68 N ARG A 59 SHEET 4 A 6 VAL A 21 PRO A 26 -1 N MET A 22 O ALA A 69 SHEET 5 A 6 LYS A 4 ARG A 11 -1 N VAL A 6 O LYS A 25 SHEET 6 A 6 TYR A 83 GLU A 85 -1 O VAL A 84 N GLY A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1