data_1SR8 # _entry.id 1SR8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1SR8 RCSB RCSB021944 WWPDB D_1000021944 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC5044 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SR8 _pdbx_database_status.recvd_initial_deposition_date 2004-03-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, R.' 1 'Skarina, T.' 2 'Savchenko, A.' 3 'Edwards, A.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title '1.9A crystal structure of cobalamin biosynthesis protein (cbiD) from Archaeoglobus fulgidus' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, R.' 1 primary 'Skarina, T.' 2 primary 'Savchenko, A.' 3 primary 'Edwards, A.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 1SR8 _cell.length_a 79.035 _cell.length_b 75.912 _cell.length_c 63.032 _cell.angle_alpha 90.00 _cell.angle_beta 113.70 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SR8 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'cobalamin biosynthesis protein (cbiD)' 33215.113 1 ? ? ? ? 2 water nat water 18.015 135 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLIDPIELYRYPEKWIKDRDAEKKVRSGLYILTEDGYLRRGITTGTTASAAAVAAIASLKEKVEKVKVSTPAGVDVEVEV EAEKGFARVRKFSGDHEFDVTNGIIFEAEVCETSGIFFGRGVGVKAGEKAVSRSAKLQILENFIKASREFNFSGGVRISV PDGEEVAKKTGNEKVGIKGGISILGTTGFVEPWCKKLVETKLKIAMQYHRIAITTGRKAWLYARKKFPEYQPFVFGVHID EALKHPGEKIIVGFPGLLKIWAGSRDRIEERAREEGVRVVVIEDDMDSWVWDVQGTDH ; _entity_poly.pdbx_seq_one_letter_code_can ;MLIDPIELYRYPEKWIKDRDAEKKVRSGLYILTEDGYLRRGITTGTTASAAAVAAIASLKEKVEKVKVSTPAGVDVEVEV EAEKGFARVRKFSGDHEFDVTNGIIFEAEVCETSGIFFGRGVGVKAGEKAVSRSAKLQILENFIKASREFNFSGGVRISV PDGEEVAKKTGNEKVGIKGGISILGTTGFVEPWCKKLVETKLKIAMQYHRIAITTGRKAWLYARKKFPEYQPFVFGVHID EALKHPGEKIIVGFPGLLKIWAGSRDRIEERAREEGVRVVVIEDDMDSWVWDVQGTDH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC5044 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 ILE n 1 4 ASP n 1 5 PRO n 1 6 ILE n 1 7 GLU n 1 8 LEU n 1 9 TYR n 1 10 ARG n 1 11 TYR n 1 12 PRO n 1 13 GLU n 1 14 LYS n 1 15 TRP n 1 16 ILE n 1 17 LYS n 1 18 ASP n 1 19 ARG n 1 20 ASP n 1 21 ALA n 1 22 GLU n 1 23 LYS n 1 24 LYS n 1 25 VAL n 1 26 ARG n 1 27 SER n 1 28 GLY n 1 29 LEU n 1 30 TYR n 1 31 ILE n 1 32 LEU n 1 33 THR n 1 34 GLU n 1 35 ASP n 1 36 GLY n 1 37 TYR n 1 38 LEU n 1 39 ARG n 1 40 ARG n 1 41 GLY n 1 42 ILE n 1 43 THR n 1 44 THR n 1 45 GLY n 1 46 THR n 1 47 THR n 1 48 ALA n 1 49 SER n 1 50 ALA n 1 51 ALA n 1 52 ALA n 1 53 VAL n 1 54 ALA n 1 55 ALA n 1 56 ILE n 1 57 ALA n 1 58 SER n 1 59 LEU n 1 60 LYS n 1 61 GLU n 1 62 LYS n 1 63 VAL n 1 64 GLU n 1 65 LYS n 1 66 VAL n 1 67 LYS n 1 68 VAL n 1 69 SER n 1 70 THR n 1 71 PRO n 1 72 ALA n 1 73 GLY n 1 74 VAL n 1 75 ASP n 1 76 VAL n 1 77 GLU n 1 78 VAL n 1 79 GLU n 1 80 VAL n 1 81 GLU n 1 82 ALA n 1 83 GLU n 1 84 LYS n 1 85 GLY n 1 86 PHE n 1 87 ALA n 1 88 ARG n 1 89 VAL n 1 90 ARG n 1 91 LYS n 1 92 PHE n 1 93 SER n 1 94 GLY n 1 95 ASP n 1 96 HIS n 1 97 GLU n 1 98 PHE n 1 99 ASP n 1 100 VAL n 1 101 THR n 1 102 ASN n 1 103 GLY n 1 104 ILE n 1 105 ILE n 1 106 PHE n 1 107 GLU n 1 108 ALA n 1 109 GLU n 1 110 VAL n 1 111 CYS n 1 112 GLU n 1 113 THR n 1 114 SER n 1 115 GLY n 1 116 ILE n 1 117 PHE n 1 118 PHE n 1 119 GLY n 1 120 ARG n 1 121 GLY n 1 122 VAL n 1 123 GLY n 1 124 VAL n 1 125 LYS n 1 126 ALA n 1 127 GLY n 1 128 GLU n 1 129 LYS n 1 130 ALA n 1 131 VAL n 1 132 SER n 1 133 ARG n 1 134 SER n 1 135 ALA n 1 136 LYS n 1 137 LEU n 1 138 GLN n 1 139 ILE n 1 140 LEU n 1 141 GLU n 1 142 ASN n 1 143 PHE n 1 144 ILE n 1 145 LYS n 1 146 ALA n 1 147 SER n 1 148 ARG n 1 149 GLU n 1 150 PHE n 1 151 ASN n 1 152 PHE n 1 153 SER n 1 154 GLY n 1 155 GLY n 1 156 VAL n 1 157 ARG n 1 158 ILE n 1 159 SER n 1 160 VAL n 1 161 PRO n 1 162 ASP n 1 163 GLY n 1 164 GLU n 1 165 GLU n 1 166 VAL n 1 167 ALA n 1 168 LYS n 1 169 LYS n 1 170 THR n 1 171 GLY n 1 172 ASN n 1 173 GLU n 1 174 LYS n 1 175 VAL n 1 176 GLY n 1 177 ILE n 1 178 LYS n 1 179 GLY n 1 180 GLY n 1 181 ILE n 1 182 SER n 1 183 ILE n 1 184 LEU n 1 185 GLY n 1 186 THR n 1 187 THR n 1 188 GLY n 1 189 PHE n 1 190 VAL n 1 191 GLU n 1 192 PRO n 1 193 TRP n 1 194 CYS n 1 195 LYS n 1 196 LYS n 1 197 LEU n 1 198 VAL n 1 199 GLU n 1 200 THR n 1 201 LYS n 1 202 LEU n 1 203 LYS n 1 204 ILE n 1 205 ALA n 1 206 MET n 1 207 GLN n 1 208 TYR n 1 209 HIS n 1 210 ARG n 1 211 ILE n 1 212 ALA n 1 213 ILE n 1 214 THR n 1 215 THR n 1 216 GLY n 1 217 ARG n 1 218 LYS n 1 219 ALA n 1 220 TRP n 1 221 LEU n 1 222 TYR n 1 223 ALA n 1 224 ARG n 1 225 LYS n 1 226 LYS n 1 227 PHE n 1 228 PRO n 1 229 GLU n 1 230 TYR n 1 231 GLN n 1 232 PRO n 1 233 PHE n 1 234 VAL n 1 235 PHE n 1 236 GLY n 1 237 VAL n 1 238 HIS n 1 239 ILE n 1 240 ASP n 1 241 GLU n 1 242 ALA n 1 243 LEU n 1 244 LYS n 1 245 HIS n 1 246 PRO n 1 247 GLY n 1 248 GLU n 1 249 LYS n 1 250 ILE n 1 251 ILE n 1 252 VAL n 1 253 GLY n 1 254 PHE n 1 255 PRO n 1 256 GLY n 1 257 LEU n 1 258 LEU n 1 259 LYS n 1 260 ILE n 1 261 TRP n 1 262 ALA n 1 263 GLY n 1 264 SER n 1 265 ARG n 1 266 ASP n 1 267 ARG n 1 268 ILE n 1 269 GLU n 1 270 GLU n 1 271 ARG n 1 272 ALA n 1 273 ARG n 1 274 GLU n 1 275 GLU n 1 276 GLY n 1 277 VAL n 1 278 ARG n 1 279 VAL n 1 280 VAL n 1 281 VAL n 1 282 ILE n 1 283 GLU n 1 284 ASP n 1 285 ASP n 1 286 MET n 1 287 ASP n 1 288 SER n 1 289 TRP n 1 290 VAL n 1 291 TRP n 1 292 ASP n 1 293 VAL n 1 294 GLN n 1 295 GLY n 1 296 THR n 1 297 ASP n 1 298 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Archaeoglobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Archaeoglobus fulgidus' _entity_src_gen.gene_src_strain 'DSM 4304' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CBID_ARCFU _struct_ref.pdbx_db_accession O29535 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLIDPIELYRYPEKWIKDRDAEKKVRSGLYILTEDGYLRRGITTGTTASAAAVAAIASLKEKVEKVKVSTPAGVDVEVEV EAEKGFARVRKFSGDHEFDVTNGIIFEAEVCETSGIFFGRGVGVKAGEKAVSRSAKLQILENFIKASREFNFSGGVRISV PDGEEVAKKTGNEKVGIKGGISILGTTGFVEPWCKKLVETKLKIAMQYHRIAITTGRKAWLYARKKFPEYQPFVFGVHID EALKHPGEKIIVGFPGLLKIWAGSRDRIEERAREEGVRVVVIEDDMDSWVWDVQGTDH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1SR8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 298 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O29535 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 298 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 298 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1SR8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.79 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.2M K/Na Tartr., 20% PEG3350, 0.05M Tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-3 _diffrn_detector.pdbx_collection_date 2004-02-18 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9797 1.0 3 0.94656 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9795, 0.9797, 0.94656' # _reflns.entry_id 1SR8 _reflns.observed_criterion_sigma_I 4.0 _reflns.observed_criterion_sigma_F 4.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 52336 _reflns.number_all 53295 _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.17 _reflns.B_iso_Wilson_estimate 17.3 _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 93.0 _reflns_shell.Rmerge_I_obs 0.405 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.554 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 55398 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1SR8 _refine.ls_number_reflns_obs 43752 _refine.ls_number_reflns_all 46152 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 286728.33 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.99 _refine.ls_d_res_high 1.9 _refine.ls_percent_reflns_obs 94.8 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 2189 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 33.7 _refine.aniso_B[1][1] -2.65 _refine.aniso_B[2][2] 3.06 _refine.aniso_B[3][3] -0.41 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 1.79 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.393579 _refine.solvent_model_param_bsol 63.1283 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1SR8 _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.29 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.35 _refine_analyze.Luzzati_sigma_a_free 0.30 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2194 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 2329 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 26.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.70 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 1406 _refine_ls_shell.R_factor_R_work 0.317 _refine_ls_shell.percent_reflns_obs 16.9 _refine_ls_shell.R_factor_R_free 0.326 _refine_ls_shell.R_factor_R_free_error 0.034 _refine_ls_shell.percent_reflns_R_free 6.2 _refine_ls_shell.number_reflns_R_free 93 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 3 ION.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1SR8 _struct.title 'Structural Genomics, 1.9A crystal structure of cobalamin biosynthesis protein (cbiD) from Archaeoglobus fulgidus' _struct.pdbx_descriptor 'cobalamin biosynthesis protein (cbiD)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SR8 _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' _struct_keywords.text ;Structural Genomics, Cobalamin biosynthesis protein (cbiD), Archaeoglobus fulgidus, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, BIOSYNTHETIC PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'This protein existed as monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? ILE A 16 ? PRO A 12 ILE A 16 5 ? 5 HELX_P HELX_P2 2 ASP A 20 ? SER A 27 ? ASP A 20 SER A 27 1 ? 8 HELX_P HELX_P3 3 THR A 43 ? SER A 58 ? THR A 43 SER A 58 1 ? 16 HELX_P HELX_P4 4 LEU A 59 ? GLU A 61 ? LEU A 59 GLU A 61 5 ? 3 HELX_P HELX_P5 5 SER A 132 ? PHE A 150 ? SER A 132 PHE A 150 1 ? 19 HELX_P HELX_P6 6 ASP A 162 ? LYS A 169 ? ASP A 162 LYS A 169 1 ? 8 HELX_P HELX_P7 7 THR A 170 ? THR A 170 ? THR A 170 THR A 170 5 ? 1 HELX_P HELX_P8 8 GLY A 171 ? GLY A 176 ? GLY A 171 GLY A 176 5 ? 6 HELX_P HELX_P9 9 CYS A 194 ? ALA A 205 ? CYS A 194 ALA A 205 1 ? 12 HELX_P HELX_P10 10 MET A 206 ? TYR A 208 ? MET A 206 TYR A 208 5 ? 3 HELX_P HELX_P11 11 GLY A 216 ? PHE A 227 ? GLY A 216 PHE A 227 1 ? 12 HELX_P HELX_P12 12 HIS A 238 ? LEU A 243 ? HIS A 238 LEU A 243 1 ? 6 HELX_P HELX_P13 13 PHE A 254 ? GLY A 263 ? PHE A 254 GLY A 263 1 ? 10 HELX_P HELX_P14 14 SER A 264 ? GLU A 274 ? SER A 264 GLU A 274 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 6 ? D ? 2 ? E ? 2 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? parallel D 1 2 ? parallel E 1 2 ? anti-parallel F 1 2 ? parallel F 2 3 ? parallel F 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 30 ? THR A 33 ? TYR A 30 THR A 33 A 2 GLY A 36 ? ARG A 39 ? GLY A 36 ARG A 39 B 1 GLY A 41 ? ILE A 42 ? GLY A 41 ILE A 42 B 2 PHE A 189 ? VAL A 190 ? PHE A 189 VAL A 190 C 1 VAL A 63 ? VAL A 68 ? VAL A 63 VAL A 68 C 2 VAL A 76 ? GLU A 83 ? VAL A 76 GLU A 83 C 3 PHE A 86 ? ARG A 90 ? PHE A 86 ARG A 90 C 4 ILE A 105 ? CYS A 111 ? ILE A 105 CYS A 111 C 5 GLY A 155 ? SER A 159 ? GLY A 155 SER A 159 C 6 GLY A 115 ? PHE A 118 ? GLY A 115 PHE A 118 D 1 GLY A 121 ? VAL A 122 ? GLY A 121 VAL A 122 D 2 GLY A 180 ? ILE A 181 ? GLY A 180 ILE A 181 E 1 VAL A 124 ? LYS A 125 ? VAL A 124 LYS A 125 E 2 GLU A 128 ? LYS A 129 ? GLU A 128 LYS A 129 F 1 GLN A 231 ? VAL A 234 ? GLN A 231 VAL A 234 F 2 ARG A 210 ? THR A 214 ? ARG A 210 THR A 214 F 3 GLU A 248 ? GLY A 253 ? GLU A 248 GLY A 253 F 4 ARG A 278 ? VAL A 281 ? ARG A 278 VAL A 281 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 33 ? N THR A 33 O GLY A 36 ? O GLY A 36 B 1 2 N GLY A 41 ? N GLY A 41 O VAL A 190 ? O VAL A 190 C 1 2 N VAL A 66 ? N VAL A 66 O VAL A 78 ? O VAL A 78 C 2 3 N GLU A 83 ? N GLU A 83 O PHE A 86 ? O PHE A 86 C 3 4 N VAL A 89 ? N VAL A 89 O PHE A 106 ? O PHE A 106 C 4 5 N GLU A 107 ? N GLU A 107 O SER A 159 ? O SER A 159 C 5 6 O ILE A 158 ? O ILE A 158 N PHE A 117 ? N PHE A 117 D 1 2 N GLY A 121 ? N GLY A 121 O ILE A 181 ? O ILE A 181 E 1 2 N LYS A 125 ? N LYS A 125 O GLU A 128 ? O GLU A 128 F 1 2 O PHE A 233 ? O PHE A 233 N THR A 214 ? N THR A 214 F 2 3 N ILE A 213 ? N ILE A 213 O ILE A 250 ? O ILE A 250 F 3 4 N ILE A 251 ? N ILE A 251 O VAL A 280 ? O VAL A 280 # _database_PDB_matrix.entry_id 1SR8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1SR8 _atom_sites.fract_transf_matrix[1][1] 0.012653 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005554 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013173 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017326 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ARG 19 19 19 ARG ALA A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 CYS 111 111 111 CYS CYS A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 SER 134 134 134 SER SER A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 PHE 143 143 143 PHE PHE A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 LYS 168 168 168 LYS LYS A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 GLY 171 171 171 GLY GLY A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 VAL 175 175 175 VAL VAL A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 PHE 189 189 189 PHE PHE A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 PRO 192 192 192 PRO PRO A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 CYS 194 194 194 CYS CYS A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 THR 200 200 200 THR THR A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 ILE 204 204 204 ILE ILE A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 MET 206 206 206 MET MET A . n A 1 207 GLN 207 207 207 GLN GLN A . n A 1 208 TYR 208 208 208 TYR TYR A . n A 1 209 HIS 209 209 209 HIS HIS A . n A 1 210 ARG 210 210 210 ARG ARG A . n A 1 211 ILE 211 211 211 ILE ILE A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 THR 215 215 215 THR THR A . n A 1 216 GLY 216 216 216 GLY GLY A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 LYS 218 218 218 LYS LYS A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 TRP 220 220 220 TRP TRP A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 ARG 224 224 224 ARG ARG A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 PHE 227 227 227 PHE PHE A . n A 1 228 PRO 228 228 228 PRO PRO A . n A 1 229 GLU 229 229 229 GLU GLU A . n A 1 230 TYR 230 230 230 TYR TYR A . n A 1 231 GLN 231 231 231 GLN GLN A . n A 1 232 PRO 232 232 232 PRO PRO A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 PHE 235 235 235 PHE PHE A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 HIS 238 238 238 HIS HIS A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 HIS 245 245 245 HIS HIS A . n A 1 246 PRO 246 246 246 PRO PRO A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 GLU 248 248 248 GLU GLU A . n A 1 249 LYS 249 249 249 LYS LYS A . n A 1 250 ILE 250 250 250 ILE ILE A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 VAL 252 252 252 VAL VAL A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 PHE 254 254 254 PHE PHE A . n A 1 255 PRO 255 255 255 PRO PRO A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 LYS 259 259 259 LYS LYS A . n A 1 260 ILE 260 260 260 ILE ILE A . n A 1 261 TRP 261 261 261 TRP TRP A . n A 1 262 ALA 262 262 262 ALA ALA A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 SER 264 264 264 SER SER A . n A 1 265 ARG 265 265 265 ARG ALA A . n A 1 266 ASP 266 266 266 ASP ASP A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 ILE 268 268 268 ILE ILE A . n A 1 269 GLU 269 269 269 GLU GLU A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 ARG 271 271 271 ARG ARG A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 ARG 273 273 273 ARG ARG A . n A 1 274 GLU 274 274 274 GLU GLU A . n A 1 275 GLU 275 275 275 GLU GLU A . n A 1 276 GLY 276 276 276 GLY GLY A . n A 1 277 VAL 277 277 277 VAL VAL A . n A 1 278 ARG 278 278 278 ARG ARG A . n A 1 279 VAL 279 279 279 VAL VAL A . n A 1 280 VAL 280 280 280 VAL VAL A . n A 1 281 VAL 281 281 281 VAL VAL A . n A 1 282 ILE 282 282 282 ILE ILE A . n A 1 283 GLU 283 283 ? ? ? A . n A 1 284 ASP 284 284 ? ? ? A . n A 1 285 ASP 285 285 ? ? ? A . n A 1 286 MET 286 286 ? ? ? A . n A 1 287 ASP 287 287 ? ? ? A . n A 1 288 SER 288 288 ? ? ? A . n A 1 289 TRP 289 289 ? ? ? A . n A 1 290 VAL 290 290 ? ? ? A . n A 1 291 TRP 291 291 ? ? ? A . n A 1 292 ASP 292 292 ? ? ? A . n A 1 293 VAL 293 293 ? ? ? A . n A 1 294 GLN 294 294 ? ? ? A . n A 1 295 GLY 295 295 ? ? ? A . n A 1 296 THR 296 296 ? ? ? A . n A 1 297 ASP 297 297 ? ? ? A . n A 1 298 HIS 298 298 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-03 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 18 ? ? 167.09 136.45 2 1 GLU A 61 ? ? 161.70 157.32 3 1 PHE A 98 ? ? -178.54 103.78 4 1 ASN A 151 ? ? 38.69 52.68 5 1 ASN A 172 ? ? -56.89 -7.74 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 19 ? CG ? A ARG 19 CG 2 1 Y 1 A ARG 19 ? CD ? A ARG 19 CD 3 1 Y 1 A ARG 19 ? NE ? A ARG 19 NE 4 1 Y 1 A ARG 19 ? CZ ? A ARG 19 CZ 5 1 Y 1 A ARG 19 ? NH1 ? A ARG 19 NH1 6 1 Y 1 A ARG 19 ? NH2 ? A ARG 19 NH2 7 1 Y 1 A ARG 265 ? CG ? A ARG 265 CG 8 1 Y 1 A ARG 265 ? CD ? A ARG 265 CD 9 1 Y 1 A ARG 265 ? NE ? A ARG 265 NE 10 1 Y 1 A ARG 265 ? CZ ? A ARG 265 CZ 11 1 Y 1 A ARG 265 ? NH1 ? A ARG 265 NH1 12 1 Y 1 A ARG 265 ? NH2 ? A ARG 265 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 283 ? A GLU 283 2 1 Y 1 A ASP 284 ? A ASP 284 3 1 Y 1 A ASP 285 ? A ASP 285 4 1 Y 1 A MET 286 ? A MET 286 5 1 Y 1 A ASP 287 ? A ASP 287 6 1 Y 1 A SER 288 ? A SER 288 7 1 Y 1 A TRP 289 ? A TRP 289 8 1 Y 1 A VAL 290 ? A VAL 290 9 1 Y 1 A TRP 291 ? A TRP 291 10 1 Y 1 A ASP 292 ? A ASP 292 11 1 Y 1 A VAL 293 ? A VAL 293 12 1 Y 1 A GLN 294 ? A GLN 294 13 1 Y 1 A GLY 295 ? A GLY 295 14 1 Y 1 A THR 296 ? A THR 296 15 1 Y 1 A ASP 297 ? A ASP 297 16 1 Y 1 A HIS 298 ? A HIS 298 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 301 HOH TIP A . B 2 HOH 2 302 302 HOH TIP A . B 2 HOH 3 303 303 HOH TIP A . B 2 HOH 4 304 304 HOH TIP A . B 2 HOH 5 305 305 HOH TIP A . B 2 HOH 6 306 306 HOH TIP A . B 2 HOH 7 307 307 HOH TIP A . B 2 HOH 8 308 308 HOH TIP A . B 2 HOH 9 309 309 HOH TIP A . B 2 HOH 10 310 310 HOH TIP A . B 2 HOH 11 311 311 HOH TIP A . B 2 HOH 12 312 312 HOH TIP A . B 2 HOH 13 313 313 HOH TIP A . B 2 HOH 14 314 314 HOH TIP A . B 2 HOH 15 315 315 HOH TIP A . B 2 HOH 16 316 316 HOH TIP A . B 2 HOH 17 318 318 HOH TIP A . B 2 HOH 18 319 319 HOH TIP A . B 2 HOH 19 320 320 HOH TIP A . B 2 HOH 20 321 321 HOH TIP A . B 2 HOH 21 322 322 HOH TIP A . B 2 HOH 22 323 323 HOH TIP A . B 2 HOH 23 324 324 HOH TIP A . B 2 HOH 24 325 325 HOH TIP A . B 2 HOH 25 326 326 HOH TIP A . B 2 HOH 26 327 327 HOH TIP A . B 2 HOH 27 328 328 HOH TIP A . B 2 HOH 28 329 329 HOH TIP A . B 2 HOH 29 330 330 HOH TIP A . B 2 HOH 30 331 331 HOH TIP A . B 2 HOH 31 332 332 HOH TIP A . B 2 HOH 32 333 333 HOH TIP A . B 2 HOH 33 334 334 HOH TIP A . B 2 HOH 34 335 335 HOH TIP A . B 2 HOH 35 336 336 HOH TIP A . B 2 HOH 36 337 337 HOH TIP A . B 2 HOH 37 338 338 HOH TIP A . B 2 HOH 38 339 339 HOH TIP A . B 2 HOH 39 340 340 HOH TIP A . B 2 HOH 40 341 341 HOH TIP A . B 2 HOH 41 342 342 HOH TIP A . B 2 HOH 42 343 343 HOH TIP A . B 2 HOH 43 344 344 HOH TIP A . B 2 HOH 44 345 345 HOH TIP A . B 2 HOH 45 346 346 HOH TIP A . B 2 HOH 46 347 347 HOH TIP A . B 2 HOH 47 348 348 HOH TIP A . B 2 HOH 48 349 349 HOH TIP A . B 2 HOH 49 350 350 HOH TIP A . B 2 HOH 50 351 351 HOH TIP A . B 2 HOH 51 352 352 HOH TIP A . B 2 HOH 52 353 353 HOH TIP A . B 2 HOH 53 354 354 HOH TIP A . B 2 HOH 54 355 355 HOH TIP A . B 2 HOH 55 356 356 HOH TIP A . B 2 HOH 56 357 357 HOH TIP A . B 2 HOH 57 358 358 HOH TIP A . B 2 HOH 58 359 359 HOH TIP A . B 2 HOH 59 360 360 HOH TIP A . B 2 HOH 60 361 361 HOH TIP A . B 2 HOH 61 362 362 HOH TIP A . B 2 HOH 62 363 363 HOH TIP A . B 2 HOH 63 364 364 HOH TIP A . B 2 HOH 64 365 365 HOH TIP A . B 2 HOH 65 366 366 HOH TIP A . B 2 HOH 66 367 367 HOH TIP A . B 2 HOH 67 368 368 HOH TIP A . B 2 HOH 68 369 369 HOH TIP A . B 2 HOH 69 370 370 HOH TIP A . B 2 HOH 70 371 371 HOH TIP A . B 2 HOH 71 372 372 HOH TIP A . B 2 HOH 72 373 373 HOH TIP A . B 2 HOH 73 374 374 HOH TIP A . B 2 HOH 74 375 375 HOH TIP A . B 2 HOH 75 376 376 HOH TIP A . B 2 HOH 76 377 377 HOH TIP A . B 2 HOH 77 378 378 HOH TIP A . B 2 HOH 78 379 379 HOH TIP A . B 2 HOH 79 380 380 HOH TIP A . B 2 HOH 80 381 381 HOH TIP A . B 2 HOH 81 382 382 HOH TIP A . B 2 HOH 82 383 383 HOH TIP A . B 2 HOH 83 384 384 HOH TIP A . B 2 HOH 84 385 385 HOH TIP A . B 2 HOH 85 386 386 HOH TIP A . B 2 HOH 86 387 387 HOH TIP A . B 2 HOH 87 388 388 HOH TIP A . B 2 HOH 88 389 389 HOH TIP A . B 2 HOH 89 390 390 HOH TIP A . B 2 HOH 90 391 391 HOH TIP A . B 2 HOH 91 392 392 HOH TIP A . B 2 HOH 92 393 393 HOH TIP A . B 2 HOH 93 394 394 HOH TIP A . B 2 HOH 94 395 395 HOH TIP A . B 2 HOH 95 396 396 HOH TIP A . B 2 HOH 96 397 397 HOH TIP A . B 2 HOH 97 398 398 HOH TIP A . B 2 HOH 98 399 399 HOH TIP A . B 2 HOH 99 400 400 HOH TIP A . B 2 HOH 100 401 401 HOH TIP A . B 2 HOH 101 402 402 HOH TIP A . B 2 HOH 102 403 403 HOH TIP A . B 2 HOH 103 404 404 HOH TIP A . B 2 HOH 104 405 405 HOH TIP A . B 2 HOH 105 406 406 HOH TIP A . B 2 HOH 106 407 407 HOH TIP A . B 2 HOH 107 408 408 HOH TIP A . B 2 HOH 108 409 409 HOH TIP A . B 2 HOH 109 410 410 HOH TIP A . B 2 HOH 110 411 411 HOH TIP A . B 2 HOH 111 412 412 HOH TIP A . B 2 HOH 112 413 413 HOH TIP A . B 2 HOH 113 414 414 HOH TIP A . B 2 HOH 114 415 415 HOH TIP A . B 2 HOH 115 416 416 HOH TIP A . B 2 HOH 116 417 417 HOH TIP A . B 2 HOH 117 418 418 HOH TIP A . B 2 HOH 118 419 419 HOH TIP A . B 2 HOH 119 420 420 HOH TIP A . B 2 HOH 120 421 421 HOH TIP A . B 2 HOH 121 422 422 HOH TIP A . B 2 HOH 122 423 423 HOH TIP A . B 2 HOH 123 424 424 HOH TIP A . B 2 HOH 124 425 425 HOH TIP A . B 2 HOH 125 426 426 HOH TIP A . B 2 HOH 126 427 427 HOH TIP A . B 2 HOH 127 428 428 HOH TIP A . B 2 HOH 128 429 429 HOH TIP A . B 2 HOH 129 430 430 HOH TIP A . B 2 HOH 130 431 431 HOH TIP A . B 2 HOH 131 432 432 HOH TIP A . B 2 HOH 132 433 433 HOH TIP A . B 2 HOH 133 434 434 HOH TIP A . B 2 HOH 134 435 435 HOH TIP A . B 2 HOH 135 436 436 HOH TIP A . #