HEADER TRANSCRIPTION 22-MAR-04 1SRK TITLE SOLUTION STRUCTURE OF THE THIRD ZINC FINGER DOMAIN OF FOG-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN ZFPM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 328-360; COMPND 5 SYNONYM: ZINC FINGER PROTEIN MULTITYPE 1, FRIEND OF GATA PROTEIN 1, COMPND 6 FRIEND OF GATA-1, FOG-1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZFPM1, FOG1, FOG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS CLASSICAL ZINC FINGER, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.J.Y.SIMPSON,S.H.Y.LEE,N.BARTLE,J.M.MATTHEWS,J.P.MACKAY,M.CROSSLEY REVDAT 3 27-OCT-21 1SRK 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1SRK 1 VERSN REVDAT 1 21-SEP-04 1SRK 0 JRNL AUTH R.J.Y.SIMPSON,S.H.Y.LEE,N.BARTLE,E.Y.SUM,J.E.VISVADER, JRNL AUTH 2 J.M.MATTHEWS,J.P.MACKAY,M.CROSSLEY JRNL TITL A CLASSIC ZINC FINGER FROM FRIEND OF GATA MEDIATES AN JRNL TITL 2 INTERACTION WITH THE COILED-COIL OF TRANSFORMING ACIDIC JRNL TITL 3 COILED-COIL 3. JRNL REF J.BIOL.CHEM. V. 279 39789 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15234987 JRNL DOI 10.1074/JBC.M404130200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, DYANA 1.5 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT ET AL (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STRUCTURES WERE BASED ON 859 REMARK 3 UNAMBIGUOUS NOE-DERIVED DISTANCE CONSTRAINTS, 20 AMBIGUOUS REMARK 3 CONSTRAINTS AND 31 DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 1SRK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021946. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275; 275 REMARK 210 PH : 5.6; 5.6 REMARK 210 IONIC STRENGTH : 0 MM; 0 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.27 MM FOG-F3, 2MM TCEP, 1 MM REMARK 210 ZNSO4, 95% H2O, 5% D2O; 0.245 MM REMARK 210 15N-FOG-F3, 2MM TCEP, 1 MM ZNSO4, REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -42.07 -174.81 REMARK 500 1 SER A 3 -152.93 -162.38 REMARK 500 1 PRO A 7 28.17 -72.29 REMARK 500 1 PHE A 8 53.18 -94.29 REMARK 500 1 CYS A 13 -128.52 -95.16 REMARK 500 1 LEU A 14 36.17 -153.66 REMARK 500 1 HIS A 30 42.20 -77.74 REMARK 500 1 THR A 31 -45.18 175.94 REMARK 500 2 LYS A 5 133.71 -173.30 REMARK 500 2 PRO A 7 4.30 -60.10 REMARK 500 2 CYS A 13 -123.38 -101.70 REMARK 500 2 LEU A 14 36.20 -157.26 REMARK 500 2 THR A 31 31.78 -176.39 REMARK 500 2 ASP A 32 130.61 -179.29 REMARK 500 3 LYS A 5 -145.85 -72.04 REMARK 500 3 ARG A 6 65.74 -159.07 REMARK 500 3 CYS A 13 -124.38 -96.24 REMARK 500 3 LEU A 14 37.46 -159.96 REMARK 500 3 HIS A 30 25.12 -79.82 REMARK 500 3 THR A 31 34.97 -179.95 REMARK 500 3 LEU A 34 43.62 -79.67 REMARK 500 4 SER A 3 -139.93 61.51 REMARK 500 4 CYS A 13 -122.53 -102.82 REMARK 500 4 LEU A 14 34.92 -159.54 REMARK 500 4 HIS A 30 43.10 -78.26 REMARK 500 4 THR A 31 -45.76 -177.93 REMARK 500 4 LEU A 34 -42.98 -161.08 REMARK 500 5 SER A 3 134.29 73.24 REMARK 500 5 PRO A 7 13.03 -65.87 REMARK 500 5 PHE A 8 48.31 -85.02 REMARK 500 5 CYS A 13 -124.89 -96.42 REMARK 500 5 LEU A 14 39.66 -160.09 REMARK 500 5 HIS A 30 47.56 -77.16 REMARK 500 5 THR A 31 -39.86 179.06 REMARK 500 5 LEU A 34 54.98 -151.78 REMARK 500 6 SER A 3 139.71 71.81 REMARK 500 6 CYS A 13 -121.87 -100.20 REMARK 500 6 LEU A 14 34.03 -159.84 REMARK 500 6 HIS A 30 34.30 -77.74 REMARK 500 6 THR A 31 -45.11 -162.28 REMARK 500 6 LEU A 34 44.93 -144.09 REMARK 500 7 SER A 3 136.35 -174.35 REMARK 500 7 ARG A 6 33.19 -98.78 REMARK 500 7 CYS A 13 -123.92 -104.52 REMARK 500 7 LEU A 14 39.48 -160.02 REMARK 500 7 THR A 31 32.29 -176.09 REMARK 500 7 ASP A 32 132.60 -170.92 REMARK 500 8 PRO A 7 24.83 -71.42 REMARK 500 8 PHE A 8 49.66 -91.50 REMARK 500 8 CYS A 13 -124.54 -99.15 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 36 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 13 SG 105.6 REMARK 620 3 HIS A 26 NE2 107.9 112.7 REMARK 620 4 HIS A 30 NE2 109.2 112.4 108.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 36 DBREF 1SRK A 3 35 UNP O35615 FOG1_MOUSE 328 360 SEQADV 1SRK GLY A 1 UNP O35615 EXPRESSION TAG SEQADV 1SRK SER A 2 UNP O35615 EXPRESSION TAG SEQADV 1SRK LYS A 5 UNP O35615 GLU 330 ENGINEERED MUTATION SEQADV 1SRK ARG A 11 UNP O35615 LEU 336 ENGINEERED MUTATION SEQADV 1SRK ALA A 24 UNP O35615 GLU 349 ENGINEERED MUTATION SEQRES 1 A 35 GLY SER SER GLY LYS ARG PRO PHE VAL CYS ARG ILE CYS SEQRES 2 A 35 LEU SER ALA PHE THR THR LYS ALA ASN CYS ALA ARG HIS SEQRES 3 A 35 LEU LYS VAL HIS THR ASP THR LEU SER HET ZN A 36 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 THR A 19 LYS A 28 1 10 HELIX 2 2 VAL A 29 THR A 31 5 3 SHEET 1 A 2 PHE A 8 VAL A 9 0 SHEET 2 A 2 ALA A 16 PHE A 17 -1 O PHE A 17 N PHE A 8 LINK SG CYS A 10 ZN ZN A 36 1555 1555 2.24 LINK SG CYS A 13 ZN ZN A 36 1555 1555 2.31 LINK NE2 HIS A 26 ZN ZN A 36 1555 1555 1.95 LINK NE2 HIS A 30 ZN ZN A 36 1555 1555 1.95 SITE 1 AC1 4 CYS A 10 CYS A 13 HIS A 26 HIS A 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1