HEADER LIGASE(SYNTHETASE) 10-AUG-93 1SRY TITLE REFINED CRYSTAL STRUCTURE OF THE SERYL-TRNA SYNTHETASE FROM THERMUS TITLE 2 THERMOPHILUS AT 2.5 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.1.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274 KEYWDS LIGASE(SYNTHETASE) EXPDTA X-RAY DIFFRACTION AUTHOR M.FUJINAGA,C.BERTHET-COLOMINAS,S.CUSACK REVDAT 4 14-FEB-24 1SRY 1 SEQADV REVDAT 3 24-FEB-09 1SRY 1 VERSN REVDAT 2 01-APR-03 1SRY 1 JRNL REVDAT 1 31-JAN-94 1SRY 0 JRNL AUTH M.FUJINAGA,C.BERTHET-COLOMINAS,A.D.YAREMCHUK,M.A.TUKALO, JRNL AUTH 2 S.CUSACK JRNL TITL REFINED CRYSTAL STRUCTURE OF THE SERYL-TRNA SYNTHETASE FROM JRNL TITL 2 THERMUS THERMOPHILUS AT 2.5 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 234 222 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8230201 JRNL DOI 10.1006/JMBI.1993.1576 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.B.GARBER,A.D.YAREMCHUK,M.A.TUKALO,S.P.EGOROVA, REMARK 1 AUTH 2 C.BERTHET-COLOMINAS,R.LEBERMAN REMARK 1 TITL CRYSTALS OF SERYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS. REMARK 1 TITL 2 PRELIMINARY CRYSTALLOGRAPHIC DATA REMARK 1 REF J.MOL.BIOL. V. 213 631 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.CUSACK,C.BERTHET-COLOMINAS,M.HAETLEIN,N.NASSAR,R.LEBERMAN REMARK 1 TITL SERYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI AT 2.5 ANGSTROMS REMARK 1 TITL 2 RESOLUTION: A SECOND CLASS OF SYNTHETASE STRUCTURE REMARK 1 REF NATURE V. 347 249 1990 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMOS REMARK 3 AUTHORS : FUJINAGA,GROS,VAN GUNSTEREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6746 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 130 OE2 GLU B 64 1656 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR A 168 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 TYR A 193 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE A 205 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 241 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 247 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 PHE A 262 CB - CG - CD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 PHE A 262 CB - CG - CD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 TYR A 281 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 313 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 329 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 344 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 365 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 365 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 372 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 375 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 401 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 403 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 403 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU A 408 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 CYS A 420 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 19 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 35 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 35 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 43 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 VAL B 58 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR B 159 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 183 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 183 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 183 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 TYR B 241 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 247 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PHE B 262 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 267 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 267 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR B 281 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 307 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 103.93 -57.39 REMARK 500 GLU A 10 43.61 -147.26 REMARK 500 GLU A 64 -67.51 -13.36 REMARK 500 GLU A 65 54.10 -119.54 REMARK 500 LYS A 121 145.97 -172.65 REMARK 500 PHE A 262 -176.31 135.77 REMARK 500 ASP A 265 94.02 45.91 REMARK 500 ARG A 267 31.61 -159.75 REMARK 500 LEU A 353 -116.57 50.96 REMARK 500 ASN A 361 62.75 61.54 REMARK 500 LEU A 382 130.29 -172.04 REMARK 500 GLU B 10 41.09 -166.59 REMARK 500 SER B 130 24.11 -79.90 REMARK 500 SER B 261 123.06 -23.09 REMARK 500 LYS B 264 69.12 145.11 REMARK 500 ASP B 265 146.36 -32.32 REMARK 500 VAL B 266 -60.79 40.05 REMARK 500 ARG B 267 -141.66 -136.13 REMARK 500 LEU B 353 -122.61 54.60 REMARK 500 GLN B 406 -61.03 -20.21 REMARK 500 CYS B 420 -102.51 -110.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 262 GLY A 263 144.25 REMARK 500 ASP A 265 VAL A 266 143.24 REMARK 500 LYS B 60 ALA B 61 140.39 REMARK 500 GLU B 258 ALA B 259 129.05 REMARK 500 LYS B 264 ASP B 265 -135.54 REMARK 500 VAL B 266 ARG B 267 -149.40 REMARK 500 ARG B 267 GLY B 268 -131.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 8 0.13 SIDE CHAIN REMARK 500 ARG A 57 0.12 SIDE CHAIN REMARK 500 TYR A 221 0.10 SIDE CHAIN REMARK 500 TYR A 251 0.08 SIDE CHAIN REMARK 500 PHE A 262 0.29 SIDE CHAIN REMARK 500 ARG A 267 0.11 SIDE CHAIN REMARK 500 HIS A 273 0.09 SIDE CHAIN REMARK 500 ARG A 342 0.19 SIDE CHAIN REMARK 500 ARG A 365 0.19 SIDE CHAIN REMARK 500 ARG A 370 0.12 SIDE CHAIN REMARK 500 ARG A 403 0.11 SIDE CHAIN REMARK 500 ARG B 35 0.14 SIDE CHAIN REMARK 500 ARG B 88 0.13 SIDE CHAIN REMARK 500 ARG B 149 0.18 SIDE CHAIN REMARK 500 ARG B 157 0.14 SIDE CHAIN REMARK 500 ARG B 182 0.13 SIDE CHAIN REMARK 500 ARG B 183 0.17 SIDE CHAIN REMARK 500 TYR B 208 0.07 SIDE CHAIN REMARK 500 ARG B 209 0.11 SIDE CHAIN REMARK 500 TYR B 251 0.10 SIDE CHAIN REMARK 500 ARG B 342 0.19 SIDE CHAIN REMARK 500 ARG B 344 0.17 SIDE CHAIN REMARK 500 ARG B 358 0.11 SIDE CHAIN REMARK 500 ARG B 359 0.11 SIDE CHAIN REMARK 500 ARG B 386 0.14 SIDE CHAIN REMARK 500 ARG B 401 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 12 -10.87 REMARK 500 ARG A 51 -10.24 REMARK 500 GLU A 64 -10.49 REMARK 500 PRO A 107 -10.36 REMARK 500 PHE A 262 15.21 REMARK 500 ASP A 265 12.17 REMARK 500 LEU A 283 10.13 REMARK 500 LYS A 327 -10.78 REMARK 500 GLN A 356 -10.46 REMARK 500 GLN A 398 -10.49 REMARK 500 ARG B 19 -10.05 REMARK 500 VAL B 37 -12.39 REMARK 500 GLN B 45 -10.63 REMARK 500 GLN B 48 -11.61 REMARK 500 ASN B 52 -10.61 REMARK 500 ALA B 80 -10.11 REMARK 500 ILE B 120 12.86 REMARK 500 LYS B 162 10.68 REMARK 500 PRO B 240 -10.36 REMARK 500 ALA B 259 11.35 REMARK 500 ASP B 399 13.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 1SRY A 1 421 UNP P34945 SYS_THET2 1 421 DBREF 1SRY B 1 421 UNP P34945 SYS_THET2 1 421 SEQADV 1SRY TYR A 208 UNP P34945 THR 208 CONFLICT SEQADV 1SRY TYR B 208 UNP P34945 THR 208 CONFLICT SEQRES 1 A 421 MET VAL ASP LEU LYS ARG LEU ARG GLN GLU PRO GLU VAL SEQRES 2 A 421 PHE HIS ARG ALA ILE ARG GLU LYS GLY VAL ALA LEU ASP SEQRES 3 A 421 LEU GLU ALA LEU LEU ALA LEU ASP ARG GLU VAL GLN GLU SEQRES 4 A 421 LEU LYS LYS ARG LEU GLN GLU VAL GLN THR GLU ARG ASN SEQRES 5 A 421 GLN VAL ALA LYS ARG VAL PRO LYS ALA PRO PRO GLU GLU SEQRES 6 A 421 LYS GLU ALA LEU ILE ALA ARG GLY LYS ALA LEU GLY GLU SEQRES 7 A 421 GLU ALA LYS ARG LEU GLU GLU ALA LEU ARG GLU LYS GLU SEQRES 8 A 421 ALA ARG LEU GLU ALA LEU LEU LEU GLN VAL PRO LEU PRO SEQRES 9 A 421 PRO TRP PRO GLY ALA PRO VAL GLY GLY GLU GLU ALA ASN SEQRES 10 A 421 ARG GLU ILE LYS ARG VAL GLY GLY PRO PRO GLU PHE SER SEQRES 11 A 421 PHE PRO PRO LEU ASP HIS VAL ALA LEU MET GLU LYS ASN SEQRES 12 A 421 GLY TRP TRP GLU PRO ARG ILE SER GLN VAL SER GLY SER SEQRES 13 A 421 ARG SER TYR ALA LEU LYS GLY ASP LEU ALA LEU TYR GLU SEQRES 14 A 421 LEU ALA LEU LEU ARG PHE ALA MET ASP PHE MET ALA ARG SEQRES 15 A 421 ARG GLY PHE LEU PRO MET THR LEU PRO SER TYR ALA ARG SEQRES 16 A 421 GLU LYS ALA PHE LEU GLY THR GLY HIS PHE PRO ALA TYR SEQRES 17 A 421 ARG ASP GLN VAL TRP ALA ILE ALA GLU THR ASP LEU TYR SEQRES 18 A 421 LEU THR GLY THR ALA GLU VAL VAL LEU ASN ALA LEU HIS SEQRES 19 A 421 SER GLY GLU ILE LEU PRO TYR GLU ALA LEU PRO LEU ARG SEQRES 20 A 421 TYR ALA GLY TYR ALA PRO ALA PHE ARG SER GLU ALA GLY SEQRES 21 A 421 SER PHE GLY LYS ASP VAL ARG GLY LEU MET ARG VAL HIS SEQRES 22 A 421 GLN PHE HIS LYS VAL GLU GLN TYR VAL LEU THR GLU ALA SEQRES 23 A 421 SER LEU GLU ALA SER ASP ARG ALA PHE GLN GLU LEU LEU SEQRES 24 A 421 GLU ASN ALA GLU GLU ILE LEU ARG LEU LEU GLU LEU PRO SEQRES 25 A 421 TYR ARG LEU VAL GLU VAL ALA THR GLY ASP MET GLY PRO SEQRES 26 A 421 GLY LYS TRP ARG GLN VAL ASP ILE GLU VAL TYR LEU PRO SEQRES 27 A 421 SER GLU GLY ARG TYR ARG GLU THR HIS SER CYS SER ALA SEQRES 28 A 421 LEU LEU ASP TRP GLN ALA ARG ARG ALA ASN LEU ARG TYR SEQRES 29 A 421 ARG ASP PRO GLU GLY ARG VAL ARG TYR ALA TYR THR LEU SEQRES 30 A 421 ASN ASN THR ALA LEU ALA THR PRO ARG ILE LEU ALA MET SEQRES 31 A 421 LEU LEU GLU ASN HIS GLN LEU GLN ASP GLY ARG VAL ARG SEQRES 32 A 421 VAL PRO GLN ALA LEU ILE PRO TYR MET GLY LYS GLU VAL SEQRES 33 A 421 LEU GLU PRO CYS GLY SEQRES 1 B 421 MET VAL ASP LEU LYS ARG LEU ARG GLN GLU PRO GLU VAL SEQRES 2 B 421 PHE HIS ARG ALA ILE ARG GLU LYS GLY VAL ALA LEU ASP SEQRES 3 B 421 LEU GLU ALA LEU LEU ALA LEU ASP ARG GLU VAL GLN GLU SEQRES 4 B 421 LEU LYS LYS ARG LEU GLN GLU VAL GLN THR GLU ARG ASN SEQRES 5 B 421 GLN VAL ALA LYS ARG VAL PRO LYS ALA PRO PRO GLU GLU SEQRES 6 B 421 LYS GLU ALA LEU ILE ALA ARG GLY LYS ALA LEU GLY GLU SEQRES 7 B 421 GLU ALA LYS ARG LEU GLU GLU ALA LEU ARG GLU LYS GLU SEQRES 8 B 421 ALA ARG LEU GLU ALA LEU LEU LEU GLN VAL PRO LEU PRO SEQRES 9 B 421 PRO TRP PRO GLY ALA PRO VAL GLY GLY GLU GLU ALA ASN SEQRES 10 B 421 ARG GLU ILE LYS ARG VAL GLY GLY PRO PRO GLU PHE SER SEQRES 11 B 421 PHE PRO PRO LEU ASP HIS VAL ALA LEU MET GLU LYS ASN SEQRES 12 B 421 GLY TRP TRP GLU PRO ARG ILE SER GLN VAL SER GLY SER SEQRES 13 B 421 ARG SER TYR ALA LEU LYS GLY ASP LEU ALA LEU TYR GLU SEQRES 14 B 421 LEU ALA LEU LEU ARG PHE ALA MET ASP PHE MET ALA ARG SEQRES 15 B 421 ARG GLY PHE LEU PRO MET THR LEU PRO SER TYR ALA ARG SEQRES 16 B 421 GLU LYS ALA PHE LEU GLY THR GLY HIS PHE PRO ALA TYR SEQRES 17 B 421 ARG ASP GLN VAL TRP ALA ILE ALA GLU THR ASP LEU TYR SEQRES 18 B 421 LEU THR GLY THR ALA GLU VAL VAL LEU ASN ALA LEU HIS SEQRES 19 B 421 SER GLY GLU ILE LEU PRO TYR GLU ALA LEU PRO LEU ARG SEQRES 20 B 421 TYR ALA GLY TYR ALA PRO ALA PHE ARG SER GLU ALA GLY SEQRES 21 B 421 SER PHE GLY LYS ASP VAL ARG GLY LEU MET ARG VAL HIS SEQRES 22 B 421 GLN PHE HIS LYS VAL GLU GLN TYR VAL LEU THR GLU ALA SEQRES 23 B 421 SER LEU GLU ALA SER ASP ARG ALA PHE GLN GLU LEU LEU SEQRES 24 B 421 GLU ASN ALA GLU GLU ILE LEU ARG LEU LEU GLU LEU PRO SEQRES 25 B 421 TYR ARG LEU VAL GLU VAL ALA THR GLY ASP MET GLY PRO SEQRES 26 B 421 GLY LYS TRP ARG GLN VAL ASP ILE GLU VAL TYR LEU PRO SEQRES 27 B 421 SER GLU GLY ARG TYR ARG GLU THR HIS SER CYS SER ALA SEQRES 28 B 421 LEU LEU ASP TRP GLN ALA ARG ARG ALA ASN LEU ARG TYR SEQRES 29 B 421 ARG ASP PRO GLU GLY ARG VAL ARG TYR ALA TYR THR LEU SEQRES 30 B 421 ASN ASN THR ALA LEU ALA THR PRO ARG ILE LEU ALA MET SEQRES 31 B 421 LEU LEU GLU ASN HIS GLN LEU GLN ASP GLY ARG VAL ARG SEQRES 32 B 421 VAL PRO GLN ALA LEU ILE PRO TYR MET GLY LYS GLU VAL SEQRES 33 B 421 LEU GLU PRO CYS GLY FORMUL 3 HOH *190(H2 O) HELIX 1 1 ASP A 3 GLU A 10 1 8 HELIX 2 2 GLU A 10 LYS A 21 1 12 HELIX 3 3 ASP A 26 VAL A 58 1 33 HELIX 4 4 PRO A 62 GLU A 65 5 4 HELIX 5 5 LYS A 66 LEU A 99 1 34 HELIX 6 6 GLY A 113 ASN A 117 5 5 HELIX 7 7 ASP A 135 GLY A 144 1 10 HELIX 8 8 ARG A 149 GLY A 155 1 7 HELIX 9 9 GLY A 163 ARG A 183 1 21 HELIX 10 10 GLU A 196 GLY A 203 1 8 HELIX 11 11 TYR A 208 VAL A 212 5 5 HELIX 12 12 ALA A 226 LEU A 233 1 8 HELIX 13 13 GLU A 242 LEU A 244 5 3 HELIX 14 14 SER A 287 LEU A 309 1 23 HELIX 15 15 GLN A 356 ASN A 361 1 6 HELIX 16 16 PRO A 385 GLN A 396 1 12 HELIX 17 17 PRO A 405 ALA A 407 5 3 HELIX 18 18 LEU A 408 GLY A 413 1 6 HELIX 19 19 ASP B 3 GLU B 10 1 8 HELIX 20 20 GLU B 10 LYS B 21 1 12 HELIX 21 21 ASP B 26 ARG B 57 1 32 HELIX 22 22 PRO B 62 LEU B 99 1 38 HELIX 23 23 GLY B 113 ASN B 117 5 5 HELIX 24 24 ASP B 135 GLY B 144 1 10 HELIX 25 25 ARG B 149 SER B 154 1 6 HELIX 26 26 GLY B 163 ARG B 182 1 20 HELIX 27 27 GLU B 196 THR B 202 1 7 HELIX 28 28 TYR B 208 VAL B 212 5 5 HELIX 29 29 ALA B 226 LEU B 233 1 8 HELIX 30 30 GLU B 242 LEU B 244 5 3 HELIX 31 31 SER B 287 GLU B 310 1 24 HELIX 32 32 PRO B 338 GLY B 341 5 4 HELIX 33 33 GLN B 356 ASN B 361 1 6 HELIX 34 34 PRO B 385 GLN B 396 1 12 HELIX 35 35 PRO B 405 ALA B 407 5 3 HELIX 36 36 LEU B 408 GLY B 413 1 6 SHEET 1 A 9 ARG A 118 VAL A 123 0 SHEET 2 A 9 TYR A 313 GLU A 317 -1 O TYR A 313 N VAL A 123 SHEET 3 A 9 ARG A 329 LEU A 337 -1 O ASP A 332 N VAL A 316 SHEET 4 A 9 ARG A 342 LEU A 353 -1 O ARG A 342 N LEU A 337 SHEET 5 A 9 TYR A 375 THR A 384 -1 N THR A 376 O LEU A 353 SHEET 6 A 9 GLN A 274 THR A 284 -1 O HIS A 276 N THR A 384 SHEET 7 A 9 LEU A 246 PHE A 255 -1 N LEU A 246 O LEU A 283 SHEET 8 A 9 LEU A 186 THR A 189 1 N LEU A 186 O ARG A 247 SHEET 9 A 9 LEU B 161 LYS B 162 -1 N LEU B 161 O THR A 189 SHEET 1 B 9 LEU A 161 LYS A 162 0 SHEET 2 B 9 LEU B 186 THR B 189 -1 O THR B 189 N LEU A 161 SHEET 3 B 9 LEU B 246 PHE B 255 1 O ARG B 247 N LEU B 186 SHEET 4 B 9 GLN B 274 THR B 284 -1 O PHE B 275 N ALA B 254 SHEET 5 B 9 TYR B 375 THR B 384 -1 O TYR B 375 N THR B 284 SHEET 6 B 9 ARG B 342 LEU B 353 -1 N SER B 350 O ASN B 378 SHEET 7 B 9 ARG B 329 LEU B 337 -1 O ARG B 329 N ALA B 351 SHEET 8 B 9 TYR B 313 GLU B 317 -1 O ARG B 314 N GLU B 334 SHEET 9 B 9 ARG B 118 VAL B 123 -1 O ARG B 118 N GLU B 317 SHEET 1 C 2 TYR A 193 ARG A 195 0 SHEET 2 C 2 LEU A 220 LEU A 222 -1 O TYR A 221 N ALA A 194 SHEET 1 D 3 ILE A 238 PRO A 240 0 SHEET 2 D 3 ARG A 363 ARG A 365 1 O ARG A 363 N LEU A 239 SHEET 3 D 3 VAL A 371 TYR A 373 -1 N ARG A 372 O TYR A 364 SHEET 1 E 2 VAL A 402 ARG A 403 0 SHEET 2 E 2 VAL A 416 LEU A 417 -1 N LEU A 417 O VAL A 402 SHEET 1 F 2 TYR B 193 ARG B 195 0 SHEET 2 F 2 LEU B 220 LEU B 222 -1 N TYR B 221 O ALA B 194 SHEET 1 G 3 ILE B 238 PRO B 240 0 SHEET 2 G 3 ARG B 363 ARG B 365 1 O ARG B 363 N LEU B 239 SHEET 3 G 3 VAL B 371 TYR B 373 -1 N ARG B 372 O TYR B 364 SHEET 1 H 2 VAL B 402 ARG B 403 0 SHEET 2 H 2 VAL B 416 LEU B 417 -1 N LEU B 417 O VAL B 402 CISPEP 1 PHE A 205 PRO A 206 0 6.71 CISPEP 2 LEU A 244 PRO A 245 0 0.05 CISPEP 3 THR A 384 PRO A 385 0 9.02 CISPEP 4 PHE B 205 PRO B 206 0 -2.42 CISPEP 5 LEU B 244 PRO B 245 0 -3.82 CISPEP 6 THR B 384 PRO B 385 0 6.87 CRYST1 87.030 127.460 63.370 90.00 108.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011490 0.000000 0.003934 0.00000 SCALE2 0.000000 0.007846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016680 0.00000