HEADER SIGNALING PROTEIN 23-MAR-04 1SS6 TITLE SOLUTION STRUCTURE OF SEP DOMAIN FROM HUMAN P47 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NSFL1 COFACTOR P47; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEP DOMAIN; COMPND 5 SYNONYM: P47; P47 PROTEIN ISOFORM A; P47 PROTEIN; P97 COFACTOR P47; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NMR; P47; SEP, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SOUKENIK,M.LEIDERT,V.SIEVERT,K.BUESSOW,D.LEITNER,D.LABUDDE, AUTHOR 2 L.J.BALL,H.OSCHKINAT REVDAT 3 02-MAR-22 1SS6 1 REMARK SEQADV REVDAT 2 24-FEB-09 1SS6 1 VERSN REVDAT 1 09-NOV-04 1SS6 0 JRNL AUTH M.SOUKENIK,A.DIEHL,M.LEIDERT,V.SIEVERT,K.BUESSOW,D.LEITNER, JRNL AUTH 2 D.LABUDDE,L.J.BALL,A.LECHNER,D.K.NAGLER,H.OSCHKINAT JRNL TITL THE SEP DOMAIN OF P47 ACTS AS A REVERSIBLE COMPETITIVE JRNL TITL 2 INHIBITOR OF CATHEPSIN L JRNL REF FEBS LETT. V. 576 358 2004 JRNL REFN ISSN 0014-5793 JRNL PMID 15498563 JRNL DOI 10.1016/J.FEBSLET.2004.09.037 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, ARIA/CNS 1.2 REMARK 3 AUTHORS : BRUKER (XWINNMR), NILGES. M. (ARIA/CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SS6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000021957. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300; 300 REMARK 210 PH : 5.6; 5.6; 5.6 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE BUFFER NA, 150MM REMARK 210 SODIUM CHLORIDE; 20MM PHOSPHATE REMARK 210 BUFFER NA, 150MM SODIUM CHLORIDE; REMARK 210 20MM PHOSPHATE BUFFER NA, 150MM REMARK 210 SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM SEP DOMAIN U-15N;20MM REMARK 210 PHOSPHATE BUFFER NA; 150MM REMARK 210 SODIUM CHLORIDE; 90% H2O, 10% REMARK 210 D2O; 1MM SEP DOMAIN U-15N,13C; REMARK 210 20MM PHOSPHATE BUFFER NA; 150MM REMARK 210 SODIUM CHLORIDE; 90% H2O, 10% REMARK 210 D2O; 1MM SEP DOMAIN U-15N,13C; REMARK 210 20MM PHOSPHATE BUFFER NA; 150MM REMARK 210 SODIUM CHLORIDE; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PASTE/PAPST 1.4, PLATON 2.0, REMARK 210 SPARKY 3.1, ARIA/CNS 1.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB1 ALA A 58 HG22 VAL A 63 1.33 REMARK 500 OE1 GLU A 73 HZ3 LYS A 91 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 3 -75.38 67.95 REMARK 500 1 LYS A 4 79.12 -154.40 REMARK 500 1 ARG A 5 -74.62 -137.79 REMARK 500 1 SER A 8 109.14 -39.06 REMARK 500 1 ASP A 11 88.42 56.39 REMARK 500 1 TYR A 33 44.75 -74.82 REMARK 500 1 GLN A 34 -43.10 -140.38 REMARK 500 1 GLN A 62 87.00 -66.59 REMARK 500 1 HIS A 70 -44.22 -138.36 REMARK 500 1 ARG A 71 -94.34 57.44 REMARK 500 1 ASP A 74 -100.60 61.45 REMARK 500 1 LYS A 77 -65.06 -138.77 REMARK 500 1 ALA A 81 -169.64 62.04 REMARK 500 1 LYS A 83 -7.59 64.90 REMARK 500 1 PHE A 85 72.41 66.04 REMARK 500 1 GLU A 88 79.15 52.35 REMARK 500 1 LYS A 91 -40.07 72.96 REMARK 500 2 ARG A 5 -86.88 68.72 REMARK 500 2 GLN A 6 -103.89 52.95 REMARK 500 2 HIS A 7 -77.27 66.38 REMARK 500 2 GLU A 29 -167.08 -77.76 REMARK 500 2 ARG A 56 44.90 -83.03 REMARK 500 2 LEU A 57 -58.14 -137.03 REMARK 500 2 ASP A 72 -29.49 177.32 REMARK 500 2 ASP A 74 164.22 65.95 REMARK 500 2 LYS A 77 144.84 80.90 REMARK 500 2 PRO A 78 -76.69 -68.86 REMARK 500 2 LYS A 79 -76.07 66.02 REMARK 500 2 ALA A 81 -34.75 72.71 REMARK 500 2 PHE A 85 59.24 -90.33 REMARK 500 2 THR A 86 74.49 -114.45 REMARK 500 2 GLN A 98 178.87 59.40 REMARK 500 2 SER A 101 -161.34 62.38 REMARK 500 3 SER A 2 -173.83 65.13 REMARK 500 3 GLN A 6 174.38 65.60 REMARK 500 3 SER A 8 -50.76 69.93 REMARK 500 3 SER A 9 44.60 -74.01 REMARK 500 3 ASP A 11 165.58 62.25 REMARK 500 3 TRP A 19 -167.83 -109.87 REMARK 500 3 ARG A 56 36.42 -88.13 REMARK 500 3 LEU A 57 -56.43 -120.70 REMARK 500 3 ASP A 72 -18.48 74.07 REMARK 500 3 ASP A 74 165.28 69.88 REMARK 500 3 PHE A 75 90.00 -66.80 REMARK 500 3 LYS A 77 143.74 77.51 REMARK 500 3 ALA A 84 -67.16 66.66 REMARK 500 3 GLN A 90 43.22 -176.39 REMARK 500 3 LYS A 91 -141.64 63.88 REMARK 500 3 LEU A 92 -71.60 71.97 REMARK 500 3 ALA A 96 84.15 66.25 REMARK 500 REMARK 500 THIS ENTRY HAS 342 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1SS6 A 3 102 UNP Q9UNZ2 NSF1C_HUMAN 171 270 SEQADV 1SS6 GLY A 1 UNP Q9UNZ2 CLONING ARTIFACT SEQADV 1SS6 SER A 2 UNP Q9UNZ2 CLONING ARTIFACT SEQRES 1 A 102 GLY SER GLU LYS ARG GLN HIS SER SER GLN ASP VAL HIS SEQRES 2 A 102 VAL VAL LEU LYS LEU TRP LYS SER GLY PHE SER LEU ASP SEQRES 3 A 102 ASN GLY GLU LEU ARG SER TYR GLN ASP PRO SER ASN ALA SEQRES 4 A 102 GLN PHE LEU GLU SER ILE ARG ARG GLY GLU VAL PRO ALA SEQRES 5 A 102 GLU LEU ARG ARG LEU ALA HIS GLY GLY GLN VAL ASN LEU SEQRES 6 A 102 ASP MET GLU ASP HIS ARG ASP GLU ASP PHE VAL LYS PRO SEQRES 7 A 102 LYS GLY ALA PHE LYS ALA PHE THR GLY GLU GLY GLN LYS SEQRES 8 A 102 LEU GLY SER THR ALA PRO GLN VAL LEU SER THR HELIX 1 1 ASN A 38 GLY A 48 1 11 HELIX 2 2 PRO A 51 ARG A 56 1 6 HELIX 3 3 LYS A 91 THR A 95 5 5 SHEET 1 A 4 LEU A 30 SER A 32 0 SHEET 2 A 4 GLY A 22 LEU A 25 -1 N PHE A 23 O ARG A 31 SHEET 3 A 4 VAL A 12 TRP A 19 -1 N TRP A 19 O GLY A 22 SHEET 4 A 4 VAL A 63 ARG A 71 1 O ASN A 64 N VAL A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1