HEADER CELL ADHESION 25-MAR-04 1ST6 TITLE CRYSTAL STRUCTURE OF A CYTOSKELETAL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VINCULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAVINCULIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: VCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS UP-DOWN BUNDLES, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR C.BAKOLITSA,R.C.LIDDINGTON REVDAT 3 14-FEB-24 1ST6 1 SEQADV REVDAT 2 24-FEB-09 1ST6 1 VERSN REVDAT 1 03-AUG-04 1ST6 0 JRNL AUTH C.BAKOLITSA,D.M.COHEN,L.A.BANKSTON,A.A.BOBKOV,G.W.CADWELL, JRNL AUTH 2 L.JENNINGS,D.R.CRITCHLEY,S.W.CRAIG,R.C.LIDDINGTON JRNL TITL STRUCTURAL BASIS FOR VINCULIN ACTIVATION AT SITES OF CELL JRNL TITL 2 ADHESION. JRNL REF NATURE V. 430 583 2004 JRNL REFN ISSN 0028-0836 JRNL PMID 15195105 JRNL DOI 10.1038/NATURE02610 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3235608.910 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.316 REMARK 3 FREE R VALUE : 0.357 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1134 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3639 REMARK 3 BIN R VALUE (WORKING SET) : 0.4280 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 190 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 127.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 30.52000 REMARK 3 B22 (A**2) : -19.36000 REMARK 3 B33 (A**2) : -11.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.66 REMARK 3 ESD FROM SIGMAA (A) : 0.98 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.75 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.98 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.230 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 56.37 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ST6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93924, 0.97955 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, XPREP REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23379 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, CACODYLIC ACID, REMARK 280 DTT, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.93500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 175.93500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.47350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.47350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 175.93500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.01000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.47350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 175.93500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.01000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.47350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 856 REMARK 465 GLU A 857 REMARK 465 LEU A 858 REMARK 465 ALA A 859 REMARK 465 PRO A 860 REMARK 465 PRO A 861 REMARK 465 LYS A 862 REMARK 465 PRO A 863 REMARK 465 PRO A 864 REMARK 465 LEU A 865 REMARK 465 PRO A 866 REMARK 465 GLU A 867 REMARK 465 GLY A 868 REMARK 465 GLU A 869 REMARK 465 VAL A 870 REMARK 465 PRO A 871 REMARK 465 PRO A 872 REMARK 465 PRO A 873 REMARK 465 ARG A 874 REMARK 465 GLN A 1066 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLU A 887 H GLN A 888 1.31 REMARK 500 C VAL A -2 CD PRO A -1 1.55 REMARK 500 CG PRO A -1 OE2 GLU A 1015 1.61 REMARK 500 NH2 ARG A 268 OE1 GLU A 645 1.73 REMARK 500 O PRO A 845 CD PRO A 847 2.02 REMARK 500 CB ALA A 613 CD1 LEU A 683 2.14 REMARK 500 CB ALA A 613 CG LEU A 683 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 534 CB ASN A 743 3655 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A -2 C PRO A -1 N 0.123 REMARK 500 PRO A -1 N PRO A -1 CA 0.271 REMARK 500 PRO A -1 CA PRO A -1 CB -0.220 REMARK 500 PRO A -1 CD PRO A -1 N 0.326 REMARK 500 PRO A 291 CA PRO A 291 C -0.145 REMARK 500 ALA A 613 CA ALA A 613 CB -0.255 REMARK 500 GLU A 645 CB GLU A 645 CG 0.211 REMARK 500 GLU A 645 CG GLU A 645 CD 0.118 REMARK 500 ASP A 718 CB ASP A 718 CG 0.159 REMARK 500 HIS A 853 CB HIS A 853 CG 0.122 REMARK 500 PRO A 875 CD PRO A 875 N 0.134 REMARK 500 PRO A 875 CA PRO A 875 C -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A -2 CA - C - N ANGL. DEV. = -18.9 DEGREES REMARK 500 VAL A -2 O - C - N ANGL. DEV. = 19.9 DEGREES REMARK 500 PRO A -1 C - N - CD ANGL. DEV. = -72.7 DEGREES REMARK 500 PRO A -1 CA - N - CD ANGL. DEV. = -27.0 DEGREES REMARK 500 PRO A -1 N - CA - CB ANGL. DEV. = 20.6 DEGREES REMARK 500 PRO A -1 N - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 PRO A 2 C - N - CD ANGL. DEV. = -27.4 DEGREES REMARK 500 PRO A 2 CA - N - CD ANGL. DEV. = -11.4 DEGREES REMARK 500 CYS A 85 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 ALA A 289 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 PRO A 290 N - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 291 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 PRO A 291 N - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 ASP A 293 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 485 N - CA - C ANGL. DEV. = 24.0 DEGREES REMARK 500 PRO A 486 C - N - CD ANGL. DEV. = -25.6 DEGREES REMARK 500 PRO A 486 CA - N - CD ANGL. DEV. = -11.8 DEGREES REMARK 500 ALA A 489 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 GLY A 513 N - CA - C ANGL. DEV. = -20.2 DEGREES REMARK 500 GLU A 565 C - N - CA ANGL. DEV. = 19.5 DEGREES REMARK 500 GLU A 565 N - CA - C ANGL. DEV. = -26.5 DEGREES REMARK 500 THR A 603 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 VAL A 611 N - CA - CB ANGL. DEV. = 13.9 DEGREES REMARK 500 ALA A 612 C - N - CA ANGL. DEV. = -18.3 DEGREES REMARK 500 GLU A 645 N - CA - CB ANGL. DEV. = 15.7 DEGREES REMARK 500 GLY A 806 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 ASN A 807 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 SER A 809 N - CA - C ANGL. DEV. = 22.2 DEGREES REMARK 500 PRO A 843 C - N - CD ANGL. DEV. = -18.5 DEGREES REMARK 500 PRO A 843 CA - N - CD ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO A 844 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO A 844 CA - N - CD ANGL. DEV. = -12.2 DEGREES REMARK 500 PRO A 845 CA - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 PRO A 847 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO A 847 CA - N - CD ANGL. DEV. = -11.6 DEGREES REMARK 500 GLU A 850 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 HIS A 853 C - N - CA ANGL. DEV. = -20.0 DEGREES REMARK 500 LEU A 854 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO A 875 CA - N - CD ANGL. DEV. = -10.5 DEGREES REMARK 500 PRO A 876 C - N - CD ANGL. DEV. = -12.8 DEGREES REMARK 500 PRO A 876 N - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 PRO A 877 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A -1 113.33 165.27 REMARK 500 MET A 1 130.17 -179.76 REMARK 500 ASP A 33 -43.94 -163.39 REMARK 500 LYS A 35 92.15 -63.56 REMARK 500 ILE A 37 78.30 -110.70 REMARK 500 PRO A 38 -178.53 -55.90 REMARK 500 ASP A 39 103.36 -41.56 REMARK 500 THR A 64 -40.41 -132.39 REMARK 500 SER A 101 99.22 -43.20 REMARK 500 HIS A 184 98.77 -69.28 REMARK 500 GLN A 221 -26.28 -30.59 REMARK 500 GLN A 249 50.29 -111.18 REMARK 500 SER A 252 -140.20 -88.64 REMARK 500 ASP A 254 99.71 -65.89 REMARK 500 ARG A 285 -72.26 -65.87 REMARK 500 PRO A 287 95.60 -47.74 REMARK 500 ASN A 288 64.38 83.42 REMARK 500 PRO A 290 140.28 -10.13 REMARK 500 PRO A 291 -122.69 -15.56 REMARK 500 CYS A 313 -69.71 -93.54 REMARK 500 ALA A 314 -143.36 -151.22 REMARK 500 TRP A 394 -42.99 -170.04 REMARK 500 ALA A 396 39.48 -98.05 REMARK 500 ASP A 397 25.63 86.37 REMARK 500 ASN A 399 78.35 -54.10 REMARK 500 SER A 402 -75.72 -71.05 REMARK 500 GLU A 423 -155.61 -84.40 REMARK 500 GLU A 424 72.54 59.51 REMARK 500 PRO A 425 95.00 -60.28 REMARK 500 LYS A 426 -39.57 -176.53 REMARK 500 LYS A 453 -148.72 31.39 REMARK 500 THR A 484 -79.33 -69.18 REMARK 500 ALA A 489 113.65 15.13 REMARK 500 ALA A 490 113.28 -169.90 REMARK 500 VAL A 491 -65.30 -128.31 REMARK 500 ASP A 510 44.49 94.39 REMARK 500 LEU A 558 -93.64 -76.59 REMARK 500 ALA A 559 33.06 -73.52 REMARK 500 GLU A 565 -15.56 173.16 REMARK 500 PRO A 567 -28.70 -39.80 REMARK 500 THR A 602 -82.78 56.86 REMARK 500 THR A 603 28.68 -76.46 REMARK 500 PRO A 616 -156.06 -66.03 REMARK 500 PRO A 620 -159.56 -88.52 REMARK 500 ARG A 622 -76.73 -31.25 REMARK 500 GLU A 623 -70.81 -65.53 REMARK 500 GLU A 624 -43.22 -29.62 REMARK 500 THR A 652 78.81 -101.12 REMARK 500 ASN A 654 -174.46 54.51 REMARK 500 LEU A 683 20.41 -156.27 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 1 10.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ST6 A 2 1066 UNP P12003 VINC_CHICK 1 1065 SEQADV 1ST6 VAL A -2 UNP P12003 CLONING ARTIFACT SEQADV 1ST6 PRO A -1 UNP P12003 CLONING ARTIFACT SEQADV 1ST6 ARG A 0 UNP P12003 CLONING ARTIFACT SEQADV 1ST6 MET A 1 UNP P12003 INITIATING METHIONINE SEQRES 1 A 1069 VAL PRO ARG MET PRO VAL PHE HIS THR ARG THR ILE GLU SEQRES 2 A 1069 SER ILE LEU GLU PRO VAL ALA GLN GLN ILE SER HIS LEU SEQRES 3 A 1069 VAL ILE MET HIS GLU GLU GLY GLU VAL ASP GLY LYS ALA SEQRES 4 A 1069 ILE PRO ASP LEU THR ALA PRO VAL SER ALA VAL GLN ALA SEQRES 5 A 1069 ALA VAL SER ASN LEU VAL ARG VAL GLY LYS GLU THR VAL SEQRES 6 A 1069 GLN THR THR GLU ASP GLN ILE LEU LYS ARG ASP MET PRO SEQRES 7 A 1069 PRO ALA PHE ILE LYS VAL GLU ASN ALA CYS THR LYS LEU SEQRES 8 A 1069 VAL ARG ALA ALA GLN MET LEU GLN ALA ASP PRO TYR SER SEQRES 9 A 1069 VAL PRO ALA ARG ASP TYR LEU ILE ASP GLY SER ARG GLY SEQRES 10 A 1069 ILE LEU SER GLY THR SER ASP LEU LEU LEU THR PHE ASP SEQRES 11 A 1069 GLU ALA GLU VAL ARG LYS ILE ILE ARG VAL CYS LYS GLY SEQRES 12 A 1069 ILE LEU GLU TYR LEU THR VAL ALA GLU VAL VAL GLU THR SEQRES 13 A 1069 MET GLU ASP LEU VAL THR TYR THR LYS ASN LEU GLY PRO SEQRES 14 A 1069 GLY MET THR LYS MET ALA LYS MET ILE ASP GLU ARG GLN SEQRES 15 A 1069 GLN GLU LEU THR HIS GLN GLU HIS ARG VAL MET LEU VAL SEQRES 16 A 1069 ASN SER MET ASN THR VAL LYS GLU LEU LEU PRO VAL LEU SEQRES 17 A 1069 ILE SER ALA MET LYS ILE PHE VAL THR THR LYS ASN THR SEQRES 18 A 1069 LYS SER GLN GLY ILE GLU GLU ALA LEU LYS ASN ARG ASN SEQRES 19 A 1069 PHE THR VAL GLU LYS MET SER ALA GLU ILE ASN GLU ILE SEQRES 20 A 1069 ILE ARG VAL LEU GLN LEU THR SER TRP ASP GLU ASP ALA SEQRES 21 A 1069 TRP ALA SER LYS ASP THR GLU ALA MET LYS ARG ALA LEU SEQRES 22 A 1069 ALA LEU ILE ASP SER LYS MET ASN GLN ALA LYS GLY TRP SEQRES 23 A 1069 LEU ARG ASP PRO ASN ALA PRO PRO GLY ASP ALA GLY GLU SEQRES 24 A 1069 GLN ALA ILE ARG GLN ILE LEU ASP GLU ALA GLY LYS ALA SEQRES 25 A 1069 GLY GLU LEU CYS ALA GLY LYS GLU ARG ARG GLU ILE LEU SEQRES 26 A 1069 GLY THR CYS LYS THR LEU GLY GLN MET THR ASP GLN LEU SEQRES 27 A 1069 ALA ASP LEU ARG ALA ARG GLY GLN GLY ALA THR PRO MET SEQRES 28 A 1069 ALA MET GLN LYS ALA GLN GLN VAL SER GLN GLY LEU ASP SEQRES 29 A 1069 LEU LEU THR ALA LYS VAL GLU ASN ALA ALA ARG LYS LEU SEQRES 30 A 1069 GLU ALA MET THR ASN SER LYS GLN ALA ILE ALA LYS LYS SEQRES 31 A 1069 ILE ASP ALA ALA GLN ASN TRP LEU ALA ASP PRO ASN GLY SEQRES 32 A 1069 GLY SER GLU GLY GLU GLU HIS ILE ARG GLY ILE MET SER SEQRES 33 A 1069 GLU ALA ARG LYS VAL ALA GLU LEU CYS GLU GLU PRO LYS SEQRES 34 A 1069 GLU ARG ASP ASP ILE LEU ARG SER LEU GLY GLU ILE SER SEQRES 35 A 1069 ALA LEU THR ALA LYS LEU SER ASP LEU ARG ARG HIS GLY SEQRES 36 A 1069 LYS GLY ASP SER PRO GLU ALA ARG ALA LEU ALA LYS GLN SEQRES 37 A 1069 ILE ALA THR SER LEU GLN ASN LEU GLN SER LYS THR ASN SEQRES 38 A 1069 ARG ALA VAL ALA ASN THR ARG PRO VAL LYS ALA ALA VAL SEQRES 39 A 1069 HIS LEU GLU GLY LYS ILE GLU GLN ALA GLN ARG TRP ILE SEQRES 40 A 1069 ASP ASN PRO THR VAL ASP ASP ARG GLY VAL GLY GLN ALA SEQRES 41 A 1069 ALA ILE ARG GLY LEU VAL ALA GLU GLY ARG ARG LEU ALA SEQRES 42 A 1069 ASN VAL MET MET GLY PRO TYR ARG GLN ASP LEU LEU ALA SEQRES 43 A 1069 LYS CYS ASP ARG VAL ASP GLN LEU ALA ALA GLN LEU ALA SEQRES 44 A 1069 ASP LEU ALA ALA ARG GLY GLU GLY GLU SER PRO GLN ALA SEQRES 45 A 1069 ARG ALA ILE ALA ALA GLN LEU GLN ASP SER LEU LYS ASP SEQRES 46 A 1069 LEU LYS ALA ARG MET GLN GLU ALA MET THR GLN GLU VAL SEQRES 47 A 1069 SER ASP VAL PHE SER ASP THR THR THR PRO ILE LYS LEU SEQRES 48 A 1069 LEU ALA VAL ALA ALA THR ALA PRO SER ASP THR PRO ASN SEQRES 49 A 1069 ARG GLU GLU VAL PHE GLU GLU ARG ALA ALA ASN PHE GLU SEQRES 50 A 1069 ASN HIS ALA ALA ARG LEU GLY ALA THR ALA GLU LYS ALA SEQRES 51 A 1069 ALA ALA VAL GLY THR ALA ASN LYS THR THR VAL GLU GLY SEQRES 52 A 1069 ILE GLN ALA THR VAL LYS SER ALA ARG GLU LEU THR PRO SEQRES 53 A 1069 GLN VAL VAL SER ALA ALA ARG ILE LEU LEU ARG ASN PRO SEQRES 54 A 1069 GLY ASN GLN ALA ALA TYR GLU HIS PHE GLU THR MET LYS SEQRES 55 A 1069 ASN GLN TRP ILE ASP ASN VAL GLU LYS MET THR GLY LEU SEQRES 56 A 1069 VAL ASP GLU ALA ILE ASP THR LYS SER LEU LEU ASP ALA SEQRES 57 A 1069 SER GLU GLU ALA ILE LYS LYS ASP LEU ASP LYS CYS LYS SEQRES 58 A 1069 VAL ALA MET ALA ASN MET GLN PRO GLN MET LEU VAL ALA SEQRES 59 A 1069 GLY ALA THR SER ILE ALA ARG ARG ALA ASN ARG ILE LEU SEQRES 60 A 1069 LEU VAL ALA LYS ARG GLU VAL GLU ASN SER GLU ASP PRO SEQRES 61 A 1069 LYS PHE ARG GLU ALA VAL LYS ALA ALA SER ASP GLU LEU SEQRES 62 A 1069 SER LYS THR ILE SER PRO MET VAL MET ASP ALA LYS ALA SEQRES 63 A 1069 VAL ALA GLY ASN ILE SER ASP PRO GLY LEU GLN LYS SER SEQRES 64 A 1069 PHE LEU ASP SER GLY TYR ARG ILE LEU GLY ALA VAL ALA SEQRES 65 A 1069 LYS VAL ARG GLU ALA PHE GLN PRO GLN GLU PRO ASP PHE SEQRES 66 A 1069 PRO PRO PRO PRO PRO ASP LEU GLU HIS LEU HIS LEU THR SEQRES 67 A 1069 ASP GLU LEU ALA PRO PRO LYS PRO PRO LEU PRO GLU GLY SEQRES 68 A 1069 GLU VAL PRO PRO PRO ARG PRO PRO PRO PRO GLU GLU LYS SEQRES 69 A 1069 ASP GLU GLU PHE PRO GLU GLN LYS ALA GLY GLU ALA ILE SEQRES 70 A 1069 ASN GLN PRO MET MET MET ALA ALA ARG GLN LEU HIS ASP SEQRES 71 A 1069 GLU ALA ARG LYS TRP SER SER LYS GLY ASN ASP ILE ILE SEQRES 72 A 1069 ALA ALA ALA LYS ARG MET ALA LEU LEU MET ALA GLU MET SEQRES 73 A 1069 SER ARG LEU VAL ARG GLY GLY SER GLY ASN LYS ARG ALA SEQRES 74 A 1069 LEU ILE GLN CYS ALA LYS ASP ILE ALA LYS ALA SER ASP SEQRES 75 A 1069 GLU VAL THR ARG LEU ALA LYS GLU VAL ALA LYS GLN CYS SEQRES 76 A 1069 THR ASP LYS ARG ILE ARG THR ASN LEU LEU GLN VAL CYS SEQRES 77 A 1069 GLU ARG ILE PRO THR ILE SER THR GLN LEU LYS ILE LEU SEQRES 78 A 1069 SER THR VAL LYS ALA THR MET LEU GLY ARG THR ASN ILE SEQRES 79 A 1069 SER ASP GLU GLU SER GLU GLN ALA THR GLU MET LEU VAL SEQRES 80 A 1069 HIS ASN ALA GLN ASN LEU MET GLN SER VAL LYS GLU THR SEQRES 81 A 1069 VAL ARG GLU ALA GLU ALA ALA SER ILE LYS ILE ARG THR SEQRES 82 A 1069 ASP ALA GLY PHE THR LEU ARG TRP VAL ARG LYS THR PRO SEQRES 83 A 1069 TRP TYR GLN HELIX 1 1 ILE A 9 ASP A 33 1 25 HELIX 2 2 LEU A 40 VAL A 62 1 23 HELIX 3 3 ASP A 67 ASP A 98 1 32 HELIX 4 4 PRO A 103 VAL A 147 1 45 HELIX 5 5 THR A 153 GLN A 180 1 28 HELIX 6 6 HIS A 184 LEU A 201 1 18 HELIX 7 7 LEU A 201 THR A 218 1 18 HELIX 8 8 ILE A 223 LEU A 248 1 26 HELIX 9 9 GLU A 255 LYS A 276 1 22 HELIX 10 10 LYS A 276 ASP A 286 1 11 HELIX 11 11 GLY A 295 LEU A 312 1 18 HELIX 12 12 GLU A 317 ARG A 339 1 23 HELIX 13 13 THR A 346 ALA A 396 1 51 HELIX 14 14 GLY A 404 CYS A 422 1 19 HELIX 15 15 GLU A 427 GLY A 452 1 26 HELIX 16 16 SER A 456 ASN A 483 1 28 HELIX 17 17 HIS A 492 ASN A 506 1 15 HELIX 18 18 GLY A 515 VAL A 532 1 18 HELIX 19 19 MET A 534 ASP A 557 1 24 HELIX 20 20 SER A 566 PHE A 599 1 34 HELIX 21 21 THR A 603 ALA A 615 1 13 HELIX 22 22 ASN A 621 GLY A 651 1 31 HELIX 23 23 ALA A 653 LEU A 682 1 30 HELIX 24 24 ASN A 688 GLU A 715 1 28 HELIX 25 25 ASP A 718 ALA A 740 1 23 HELIX 26 26 ALA A 751 ASN A 773 1 23 HELIX 27 27 ASP A 776 ALA A 803 1 28 HELIX 28 28 LEU A 813 LEU A 818 1 6 HELIX 29 29 ARG A 823 GLN A 836 1 14 HELIX 30 30 GLN A 896 ARG A 910 1 15 HELIX 31 31 ASN A 917 LEU A 936 1 20 HELIX 32 32 LYS A 944 CYS A 972 1 29 HELIX 33 33 ASP A 974 GLU A 986 1 13 HELIX 34 34 ARG A 987 MET A 1005 1 19 HELIX 35 35 SER A 1012 SER A 1045 1 34 CRYST1 56.020 126.947 351.870 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002842 0.00000