HEADER COMPLEX (DNA-BINDING PROTEIN/DNA) 14-OCT-95 1STT OBSLTE 12-MAR-97 1STT 2STT TITLE SOLUTION NMR STRUCTURE OF THE HUMAN ETS1/DNA COMPLEX, 28 TITLE 2 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBONUCLEIC ACID; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DEOXYRIBONUCLEIC ACID; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ETS1; COMPND 11 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN KEYWDS COMPLEX (DNA-BINDING PROTEIN/DNA) EXPDTA NMR, 28 STRUCTURES AUTHOR G.M.CLORE,M.H.WERNER,A.M.GRONENBORN REVDAT 1 03-APR-96 1STT 0 JRNL AUTH M.H.WERNER,G.M.CLORE,C.L.FISHER,R.J.FISHER,L.TRINH, JRNL AUTH 2 J.SHILOACH,A.M.GRONENBORN JRNL TITL THE SOLUTION STRUCTURE OF THE HUMAN ETS1(SLASH)DNA JRNL TITL 2 COMPLEX REVEALS A NOVEL MODE OF BINDING AND TRUE JRNL TITL 3 SIDECHAIN INTERCALATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 83 761 1995 JRNL REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1STT COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1STT THE 3D STRUCTURE OF THE HUMAN ETS1-DNA COMPLEX SOLVED REMARK 5 BY 1STT MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND - REMARK 5 FILTERED NMR 1STT IS BASED ON 2395 EXPERIMENTAL RESTRAINTS: REMARK 5 (A) INTRA- 1STT PROTEIN: 251 SEQUENTIAL (|I- J|=1), 176 REMARK 5 MEDIUM RANGE (1 < 1STT |I-J| >=5) AND 269 LONG RANGE (|I-J| REMARK 5 >5) INTERRESIDUES AND 1STT 206 INTRARESIDUE APPROXIMATE REMARK 5 INTERPROTON DISTANCE 1STT RESTRAINTS; 66 DISTANCE REMARK 5 RESTRAINTS FOR 33 HYDROGEN BONDS; 1STT 223 TORSION ANGLE REMARK 5 (96 PHI, 23 PSI, 72 CHI1 AND 32 CHI2) 1STT RESTRAINTS; 49 REMARK 5 THREE-BOND HN-HA COUPLING CONSTANT 1STT RESTRAINTS; AND 167 REMARK 5 (90 CALPHA AND 77 CBETA) 13C SHIFT 1STT RESTRAINTS. REMARK 5 (NUMBERS OF RESIDUES 10 - 105) (B) INTRA-DNA: 1STT 307 REMARK 5 INTRARESIDUE, 199 SEQUENTIAL INTRASTRAND, 78 1STT REMARK 5 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 88 H-BOND 1STT REMARK 5 RESTRAINTS; 196 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, REMARK 5 1STT GAMMA, DELTA, EPSILON AND AND ZETA BACKBONE TORSION REMARK 5 1STT ANGLES). (C) INTERMOLECULAR: 70 INTERPROTON DISTANCE REMARK 5 1STT RESTRAINTS. THE RESTRAINTS HAVE BEEN DEPOSITED. 1STT REMARK 6 REMARK 6 1STT THE STRUCTURES WERE CALCULATED USING THE SIMULATED REMARK 6 1STT ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. REMARK 6 229, 1STT 129-136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) REMARK 6 MODIFIED 1STT TO INCORPORATE COUPLING CONSTANT (GARRETT ET REMARK 6 AL. (1984) J. 1STT MAGN. RESON. SERIES B 104, 99-103) AND REMARK 6 CARBON CHEMICAL 1STT SHIFT (KUSZEWSKI ET AL. (1995) J. REMARK 6 MAGN. RESON. SERIES B 1STT 106, 92-96) RESTRAINTS. 1STT REMARK 7 REMARK 7 1STT THE RESTRAINED REGULARIZED MEAN STRUCTURE IS PRESENTED REMARK 7 IN 1STT ENTRY 1STW AND 28 STRUCTURES ARE PRESENTED IN ENTRY REMARK 7 1STT. 1STT IN 1STW THE LAST COLUMN REPRESENTS THE RMS OF REMARK 7 THE 28 1STT INDIVIDUAL SIMULATED ANNEALING STRUCTURES ABOUT REMARK 7 THE MEAN 1STT COORDINATE POSITIONS. THE LAST COLUMN IN THE REMARK 7 INDIVIDUAL SA 1STT STRUCTURES HAS NO MEANING. BEST FITTING REMARK 7 TO GENERATE THE 1STT AVERAGE STRUCTURE IS WITH RESPECT TO REMARK 7 RESIDUES 25 - 105 OF 1STT THE PROTEIN AND BASE PAIRS 2 - 16 REMARK 7 OF THE DNA (RESIDUES 10 - 1STT 24 ARE DISORDERED IN REMARK 7 SOLUTION). RESIDUE 10 CORRESPONDS TO 1STT RESIDUE 320 OF REMARK 7 THE NATURAL SEQUENCE. NOTE THE OCCUPANCY 1STT FIELD HAS NO REMARK 7 MEANING. 1STT REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : NULL REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 1 ARG A 1 REMARK 465 1 ALA A 2 REMARK 465 1 GLU A 3 REMARK 465 1 LEU A 4 REMARK 465 1 ASN A 5 REMARK 465 1 LYS A 6 REMARK 465 1 ASP A 7 REMARK 465 1 LYS A 8 REMARK 465 1 PRO A 9 REMARK 465 2 ARG A 1 REMARK 465 2 ALA A 2 REMARK 465 2 GLU A 3 REMARK 465 2 LEU A 4 REMARK 465 2 ASN A 5 REMARK 465 2 LYS A 6 REMARK 465 2 ASP A 7 REMARK 465 2 LYS A 8 REMARK 465 2 PRO A 9 REMARK 465 3 ARG A 1 REMARK 465 3 ALA A 2 REMARK 465 3 GLU A 3 REMARK 465 3 LEU A 4 REMARK 465 3 ASN A 5 REMARK 465 3 LYS A 6 REMARK 465 3 ASP A 7 REMARK 465 3 LYS A 8 REMARK 465 3 PRO A 9 REMARK 465 4 ARG A 1 REMARK 465 4 ALA A 2 REMARK 465 4 GLU A 3 REMARK 465 4 LEU A 4 REMARK 465 4 ASN A 5 REMARK 465 4 LYS A 6 REMARK 465 4 ASP A 7 REMARK 465 4 LYS A 8 REMARK 465 4 PRO A 9 REMARK 465 5 ARG A 1 REMARK 465 5 ALA A 2 REMARK 465 5 GLU A 3 REMARK 465 5 LEU A 4 REMARK 465 5 ASN A 5 REMARK 465 5 LYS A 6 REMARK 465 5 ASP A 7 REMARK 465 5 LYS A 8 REMARK 465 5 PRO A 9 REMARK 465 6 ARG A 1 REMARK 465 6 ALA A 2 REMARK 465 6 GLU A 3 REMARK 465 6 LEU A 4 REMARK 465 6 ASN A 5 REMARK 465 6 LYS A 6 REMARK 465 6 ASP A 7 REMARK 465 6 LYS A 8 REMARK 465 6 PRO A 9 REMARK 465 7 ARG A 1 REMARK 465 7 ALA A 2 REMARK 465 7 GLU A 3 REMARK 465 7 LEU A 4 REMARK 465 7 ASN A 5 REMARK 465 7 LYS A 6 REMARK 465 7 ASP A 7 REMARK 465 7 LYS A 8 REMARK 465 7 PRO A 9 REMARK 465 8 ARG A 1 REMARK 465 8 ALA A 2 REMARK 465 8 GLU A 3 REMARK 465 8 LEU A 4 REMARK 465 8 ASN A 5 REMARK 465 8 LYS A 6 REMARK 465 8 ASP A 7 REMARK 465 8 LYS A 8 REMARK 465 8 PRO A 9 REMARK 465 9 ARG A 1 REMARK 465 9 ALA A 2 REMARK 465 9 GLU A 3 REMARK 465 9 LEU A 4 REMARK 465 9 ASN A 5 REMARK 465 9 LYS A 6 REMARK 465 9 ASP A 7 REMARK 465 9 LYS A 8 REMARK 465 9 PRO A 9 REMARK 465 10 ARG A 1 REMARK 465 10 ALA A 2 REMARK 465 10 GLU A 3 REMARK 465 10 LEU A 4 REMARK 465 10 ASN A 5 REMARK 465 10 LYS A 6 REMARK 465 10 ASP A 7 REMARK 465 10 LYS A 8 REMARK 465 10 PRO A 9 REMARK 465 11 ARG A 1 REMARK 465 11 ALA A 2 REMARK 465 11 GLU A 3 REMARK 465 11 LEU A 4 REMARK 465 11 ASN A 5 REMARK 465 11 LYS A 6 REMARK 465 11 ASP A 7 REMARK 465 11 LYS A 8 REMARK 465 11 PRO A 9 REMARK 465 12 ARG A 1 REMARK 465 12 ALA A 2 REMARK 465 12 GLU A 3 REMARK 465 12 LEU A 4 REMARK 465 12 ASN A 5 REMARK 465 12 LYS A 6 REMARK 465 12 ASP A 7 REMARK 465 12 LYS A 8 REMARK 465 12 PRO A 9 REMARK 465 13 ARG A 1 REMARK 465 13 ALA A 2 REMARK 465 13 GLU A 3 REMARK 465 13 LEU A 4 REMARK 465 13 ASN A 5 REMARK 465 13 LYS A 6 REMARK 465 13 ASP A 7 REMARK 465 13 LYS A 8 REMARK 465 13 PRO A 9 REMARK 465 14 ARG A 1 REMARK 465 14 ALA A 2 REMARK 465 14 GLU A 3 REMARK 465 14 LEU A 4 REMARK 465 14 ASN A 5 REMARK 465 14 LYS A 6 REMARK 465 14 ASP A 7 REMARK 465 14 LYS A 8 REMARK 465 14 PRO A 9 REMARK 465 15 ARG A 1 REMARK 465 15 ALA A 2 REMARK 465 15 GLU A 3 REMARK 465 15 LEU A 4 REMARK 465 15 ASN A 5 REMARK 465 15 LYS A 6 REMARK 465 15 ASP A 7 REMARK 465 15 LYS A 8 REMARK 465 15 PRO A 9 REMARK 465 16 ARG A 1 REMARK 465 16 ALA A 2 REMARK 465 16 GLU A 3 REMARK 465 16 LEU A 4 REMARK 465 16 ASN A 5 REMARK 465 16 LYS A 6 REMARK 465 16 ASP A 7 REMARK 465 16 LYS A 8 REMARK 465 16 PRO A 9 REMARK 465 17 ARG A 1 REMARK 465 17 ALA A 2 REMARK 465 17 GLU A 3 REMARK 465 17 LEU A 4 REMARK 465 17 ASN A 5 REMARK 465 17 LYS A 6 REMARK 465 17 ASP A 7 REMARK 465 17 LYS A 8 REMARK 465 17 PRO A 9 REMARK 465 18 ARG A 1 REMARK 465 18 ALA A 2 REMARK 465 18 GLU A 3 REMARK 465 18 LEU A 4 REMARK 465 18 ASN A 5 REMARK 465 18 LYS A 6 REMARK 465 18 ASP A 7 REMARK 465 18 LYS A 8 REMARK 465 18 PRO A 9 REMARK 465 19 ARG A 1 REMARK 465 19 ALA A 2 REMARK 465 19 GLU A 3 REMARK 465 19 LEU A 4 REMARK 465 19 ASN A 5 REMARK 465 19 LYS A 6 REMARK 465 19 ASP A 7 REMARK 465 19 LYS A 8 REMARK 465 19 PRO A 9 REMARK 465 20 ARG A 1 REMARK 465 20 ALA A 2 REMARK 465 20 GLU A 3 REMARK 465 20 LEU A 4 REMARK 465 20 ASN A 5 REMARK 465 20 LYS A 6 REMARK 465 20 ASP A 7 REMARK 465 20 LYS A 8 REMARK 465 20 PRO A 9 REMARK 465 21 ARG A 1 REMARK 465 21 ALA A 2 REMARK 465 21 GLU A 3 REMARK 465 21 LEU A 4 REMARK 465 21 ASN A 5 REMARK 465 21 LYS A 6 REMARK 465 21 ASP A 7 REMARK 465 21 LYS A 8 REMARK 465 21 PRO A 9 REMARK 465 22 ARG A 1 REMARK 465 22 ALA A 2 REMARK 465 22 GLU A 3 REMARK 465 22 LEU A 4 REMARK 465 22 ASN A 5 REMARK 465 22 LYS A 6 REMARK 465 22 ASP A 7 REMARK 465 22 LYS A 8 REMARK 465 22 PRO A 9 REMARK 465 23 ARG A 1 REMARK 465 23 ALA A 2 REMARK 465 23 GLU A 3 REMARK 465 23 LEU A 4 REMARK 465 23 ASN A 5 REMARK 465 23 LYS A 6 REMARK 465 23 ASP A 7 REMARK 465 23 LYS A 8 REMARK 465 23 PRO A 9 REMARK 465 24 ARG A 1 REMARK 465 24 ALA A 2 REMARK 465 24 GLU A 3 REMARK 465 24 LEU A 4 REMARK 465 24 ASN A 5 REMARK 465 24 LYS A 6 REMARK 465 24 ASP A 7 REMARK 465 24 LYS A 8 REMARK 465 24 PRO A 9 REMARK 465 25 ARG A 1 REMARK 465 25 ALA A 2 REMARK 465 25 GLU A 3 REMARK 465 25 LEU A 4 REMARK 465 25 ASN A 5 REMARK 465 25 LYS A 6 REMARK 465 25 ASP A 7 REMARK 465 25 LYS A 8 REMARK 465 25 PRO A 9 REMARK 465 26 ARG A 1 REMARK 465 26 ALA A 2 REMARK 465 26 GLU A 3 REMARK 465 26 LEU A 4 REMARK 465 26 ASN A 5 REMARK 465 26 LYS A 6 REMARK 465 26 ASP A 7 REMARK 465 26 LYS A 8 REMARK 465 26 PRO A 9 REMARK 465 27 ARG A 1 REMARK 465 27 ALA A 2 REMARK 465 27 GLU A 3 REMARK 465 27 LEU A 4 REMARK 465 27 ASN A 5 REMARK 465 27 LYS A 6 REMARK 465 27 ASP A 7 REMARK 465 27 LYS A 8 REMARK 465 27 PRO A 9 REMARK 465 28 ARG A 1 REMARK 465 28 ALA A 2 REMARK 465 28 GLU A 3 REMARK 465 28 LEU A 4 REMARK 465 28 ASN A 5 REMARK 465 28 LYS A 6 REMARK 465 28 ASP A 7 REMARK 465 28 LYS A 8 REMARK 465 28 PRO A 9 REMARK 999 REMARK 999 1STT FOR CHAIN "A" - 9 N-TERMINAL RESIDUES NOT IN ATOMS REMARK 999 LIST 1STT DBREF 1STT A 10 105 UNP P18756 ETSB_XENLA 147 242 SEQRES 1 B 17 T C G A G C C G G A A G T SEQRES 2 B 17 T C G A SEQRES 1 C 17 T C G A A C T T C C G G C SEQRES 2 C 17 T C G A SEQRES 1 A 105 ARG ALA GLU LEU ASN LYS ASP LYS PRO VAL ILE PRO ALA SEQRES 2 A 105 ALA ALA LEU ALA GLY TYR THR GLY SER GLY PRO ILE GLN SEQRES 3 A 105 LEU TRP GLN PHE LEU LEU GLU LEU LEU THR ASP LYS SER SEQRES 4 A 105 CYS GLN SER PHE ILE SER TRP THR GLY ASP GLY TRP GLU SEQRES 5 A 105 PHE LYS LEU SER ASP PRO ASP GLU VAL ALA ARG ARG TRP SEQRES 6 A 105 GLY LYS ARG LYS ASN LYS PRO LYS MET ASN TYR GLU LYS SEQRES 7 A 105 LEU SER ARG GLY LEU ARG TYR TYR TYR ASP LYS ASN ILE SEQRES 8 A 105 ILE HIS LYS THR ALA GLY LYS ARG TYR VAL TYR ARG PHE SEQRES 9 A 105 VAL HELIX 1 1 LEU A 27 THR A 36 1 10 HELIX 2 2 SER A 39 GLN A 41 5 3 HELIX 3 3 ASP A 59 LYS A 67 5 9 HELIX 4 4 TYR A 76 TYR A 85 5 10 SHEET 1 A 2 SER A 45 THR A 47 0 SHEET 2 A 2 GLU A 52 LYS A 54 -1 N LYS A 54 O SER A 45 SHEET 1 B 2 ILE A 92 LYS A 94 0 SHEET 2 B 2 TYR A 102 PHE A 104 -1 N ARG A 103 O HIS A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1