HEADER COMPLEX (DNA-BINDING PROTEIN/DNA) 14-OCT-95 1STW OBSLTE 12-MAR-97 1STW 2STW TITLE SOLUTION NMR STRUCTURE OF THE HUMAN ETS1/DNA COMPLEX, TITLE 2 MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBONUCLEIC ACID; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DEOXYRIBONUCLEIC ACID; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ETS1; COMPND 11 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN KEYWDS COMPLEX (DNA-BINDING PROTEIN/DNA) EXPDTA NMR AUTHOR G.M.CLORE,M.H.WERNER,A.M.GRONENBORN REVDAT 1 03-APR-96 1STW 0 JRNL AUTH M.H.WERNER,G.M.CLORE,C.L.FISHER,R.J.FISHER,L.TRINH, JRNL AUTH 2 J.SHILOACH,A.M.GRONENBORN JRNL TITL THE SOLUTION STRUCTURE OF THE HUMAN ETS1(SLASH)DNA JRNL TITL 2 COMPLEX REVEALS A NOVEL MODE OF BINDING AND TRUE JRNL TITL 3 SIDECHAIN INTERCALATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 83 761 1995 JRNL REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1STW COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1STW THE 3D STRUCTURE OF THE HUMAN ETS1-DNA COMPLEX SOLVED REMARK 5 BY 1STW MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND - REMARK 5 FILTERED NMR 1STW IS BASED ON 2395 EXPERIMENTAL RESTRAINTS: REMARK 5 (A) INTRA- 1STW PROTEIN: 251 SEQUENTIAL (|I- J|=1), 176 REMARK 5 MEDIUM RANGE (1 < 1STW |I-J| >=5) AND 269 LONG RANGE (|I-J| REMARK 5 >5) INTERRESIDUES AND 1STW 206 INTRARESIDUE APPROXIMATE REMARK 5 INTERPROTON DISTANCE 1STW RESTRAINTS; 66 DISTANCE REMARK 5 RESTRAINTS FOR 33 HYDROGEN BONDS; 1STW 223 TORSION ANGLE REMARK 5 (96 PHI, 23 PSI, 72 CHI1 AND 32 CHI2) 1STW RESTRAINTS; 49 REMARK 5 THREE-BOND HN-HA COUPLING CONSTANT 1STW RESTRAINTS; AND 167 REMARK 5 (90 CALPHA AND 77 CBETA) 13C SHIFT 1STW RESTRAINTS. REMARK 5 (NUMBERS OF RESIDUES 10 - 105) (B) INTRA-DNA: 1STW 307 REMARK 5 INTRARESIDUE, 199 SEQUENTIAL INTRASTRAND, 78 1STW REMARK 5 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 88 H-BOND 1STW REMARK 5 RESTRAINTS; 196 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, REMARK 5 1STW GAMMA, DELTA, EPSILON AND AND ZETA BACKBONE TORSION REMARK 5 1STW ANGLES). (C) INTERMOLECULAR: 70 INTERPROTON DISTANCE REMARK 5 1STW RESTRAINTS. THE RESTRAINTS HAVE BEEN DEPOSITED. 1STW REMARK 6 REMARK 6 1STW THE STRUCTURES WERE CALCULATED USING THE SIMULATED REMARK 6 1STW ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. REMARK 6 229, 1STW 129-136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) REMARK 6 MODIFIED 1STW TO INCORPORATE COUPLING CONSTANT (GARRETT ET REMARK 6 AL. (1984) J. 1STW MAGN. RESON. SERIES B 104, 99-103) AND REMARK 6 CARBON CHEMICAL 1STW SHIFT (KUSZEWSKI ET AL. (1995) J. REMARK 6 MAGN. RESON. SERIES B 1STW 106, 92-96) RESTRAINTS. 1STW REMARK 7 REMARK 7 1STW THE RESTRAINED REGULARIZED MEAN STRUCTURE IS PRESENTED REMARK 7 IN 1STW ENTRY 1STW AND 28 STRUCTURES ARE PRESENTED IN ENTRY REMARK 7 1STT. 1STW IN 1STW THE LAST COLUMN REPRESENTS THE RMS OF REMARK 7 THE 28 1STW INDIVIDUAL SIMULATED ANNEALING STRUCTURES ABOUT REMARK 7 THE MEAN 1STW COORDINATE POSITIONS. THE LAST COLUMN IN THE REMARK 7 INDIVIDUAL SA 1STW STRUCTURES HAS NO MEANING. BEST FITTING REMARK 7 TO GENERATE THE 1STW AVERAGE STRUCTURE IS WITH RESPECT TO REMARK 7 RESIDUES 25 - 105 OF 1STW THE PROTEIN AND BASE PAIRS 2 - 16 REMARK 7 OF THE DNA (RESIDUES 10 - 1STW 24 ARE DISORDERED IN REMARK 7 SOLUTION). RESIDUE 10 CORRESPONDS TO 1STW RESIDUE 320 OF REMARK 7 THE NATURAL SEQUENCE. NOTE THE OCCUPANCY 1STW FIELD HAS NO REMARK 7 MEANING. 1STW REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : NULL REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 999 REMARK 999 1STW FOR CHAIN "A" - 9 N-TERMINAL RESIDUES NOT IN ATOMS REMARK 999 LIST 1STW DBREF 1STW A 10 105 UNP P18756 ETSB_XENLA 147 242 SEQRES 1 B 17 T C G A G C C G G A A G T SEQRES 2 B 17 T C G A SEQRES 1 C 17 T C G A A C T T C C G G C SEQRES 2 C 17 T C G A SEQRES 1 A 105 ARG ALA GLU LEU ASN LYS ASP LYS PRO VAL ILE PRO ALA SEQRES 2 A 105 ALA ALA LEU ALA GLY TYR THR GLY SER GLY PRO ILE GLN SEQRES 3 A 105 LEU TRP GLN PHE LEU LEU GLU LEU LEU THR ASP LYS SER SEQRES 4 A 105 CYS GLN SER PHE ILE SER TRP THR GLY ASP GLY TRP GLU SEQRES 5 A 105 PHE LYS LEU SER ASP PRO ASP GLU VAL ALA ARG ARG TRP SEQRES 6 A 105 GLY LYS ARG LYS ASN LYS PRO LYS MET ASN TYR GLU LYS SEQRES 7 A 105 LEU SER ARG GLY LEU ARG TYR TYR TYR ASP LYS ASN ILE SEQRES 8 A 105 ILE HIS LYS THR ALA GLY LYS ARG TYR VAL TYR ARG PHE SEQRES 9 A 105 VAL HELIX 1 1 LEU A 27 THR A 36 1 10 HELIX 2 2 SER A 39 PHE A 43 5 5 HELIX 3 3 ASP A 59 LYS A 67 5 9 HELIX 4 4 GLU A 77 TYR A 85 1 9 SHEET 1 A 2 SER A 45 THR A 47 0 SHEET 2 A 2 GLU A 52 LYS A 54 -1 N LYS A 54 O SER A 45 SHEET 1 B 2 ILE A 92 LYS A 94 0 SHEET 2 B 2 TYR A 102 PHE A 104 -1 N ARG A 103 O HIS A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000