HEADER OXIDOREDUCTASE 26-MAR-04 1SU7 TITLE CARBON MONOXIDE DEHYDROGENASE FROM CARBOXYDOTHERMUS HYDROGENOFORMANS- TITLE 2 DTT REDUCED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON MONOXIDE DEHYDROGENASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CODH 2; COMPND 5 EC: 1.2.99.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS; SOURCE 3 ORGANISM_TAXID: 129958 KEYWDS CODH, CARBON MONOXIDE DEHYDROGENASE, NICKEL, CLUSTER C, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DOBBEK,V.SVETLITCHNYI,J.LISS,O.MEYER REVDAT 7 14-FEB-24 1SU7 1 REMARK LINK REVDAT 6 11-OCT-17 1SU7 1 REMARK REVDAT 5 13-JUL-11 1SU7 1 VERSN REVDAT 4 09-MAR-11 1SU7 1 REMARK REVDAT 3 31-MAR-09 1SU7 1 ATOM CONECT REVDAT 2 24-FEB-09 1SU7 1 VERSN REVDAT 1 11-MAY-04 1SU7 0 JRNL AUTH H.DOBBEK,V.SVETLITCHNYI,J.LISS,O.MEYER JRNL TITL CARBON MONOXIDE INDUCED DECOMPOSITION OF THE ACTIVE SITE JRNL TITL 2 [NI-4FE-5S] CLUSTER OF CO DEHYDROGENASE JRNL REF J.AM.CHEM.SOC. V. 126 5382 2004 JRNL REFN ISSN 0002-7863 JRNL PMID 15113209 JRNL DOI 10.1021/JA037776V REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.138 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 9794 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 185931 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 1167 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000021995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 205157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3000, 2-PROPANOL, HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.80800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.91250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.80800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.91250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -X, Y, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.03599 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.05176 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1433 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1434 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1672 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1801 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 5 CG OD1 ND2 REMARK 480 LYS A 105 CD CE NZ REMARK 480 LYS A 111 NZ REMARK 480 GLU A 135 CG CD OE1 OE2 REMARK 480 LYS A 148 CE NZ REMARK 480 ASP A 158 CG OD1 OD2 REMARK 480 LYS A 250 NZ REMARK 480 SER A 266 OG REMARK 480 GLU A 354 CB CG CD OE1 OE2 REMARK 480 LYS A 376 CE NZ REMARK 480 ARG A 388 CD NE CZ NH1 NH2 REMARK 480 LYS A 390 CB CG CD CE NZ REMARK 480 ASP A 493 CG OD2 REMARK 480 LYS A 501 NZ REMARK 480 GLU A 509 OE1 OE2 REMARK 480 GLN A 594 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 5 O HOH A 1479 0.61 REMARK 500 OE1 GLN A 594 O HOH A 1474 0.62 REMARK 500 OE1 GLU A 135 O HOH A 1480 0.86 REMARK 500 CG GLU A 354 O HOH A 1245 0.89 REMARK 500 OD2 ASP A 158 O HOH A 1703 1.04 REMARK 500 CE LYS A 105 O HOH A 1629 1.06 REMARK 500 CD LYS A 390 O HOH A 1410 1.07 REMARK 500 OD2 ASP A 493 O HOH A 1472 1.07 REMARK 500 CE LYS A 390 O HOH A 1410 1.18 REMARK 500 NE2 GLN A 594 O HOH A 1354 1.32 REMARK 500 CD GLN A 594 O HOH A 1474 1.37 REMARK 500 CG ASP A 158 O HOH A 1703 1.46 REMARK 500 CD GLU A 135 O HOH A 1480 1.52 REMARK 500 ND2 ASN A 5 O HOH A 1510 1.58 REMARK 500 OD1 ASP A 158 O HOH A 1567 1.62 REMARK 500 CG ASN A 5 O HOH A 1479 1.65 REMARK 500 CD LYS A 105 O HOH A 1770 1.65 REMARK 500 CD LYS A 105 O HOH A 1629 1.66 REMARK 500 NZ LYS A 105 O HOH A 1559 1.67 REMARK 500 CG ASP A 493 O HOH A 1472 1.68 REMARK 500 OD1 ASP A 158 O HOH A 1703 1.74 REMARK 500 CD GLU A 354 O HOH A 1245 1.90 REMARK 500 ND2 ASN A 5 O HOH A 1224 1.94 REMARK 500 NE ARG A 388 O HOH A 1577 1.95 REMARK 500 NE2 GLN A 594 O HOH A 1474 2.00 REMARK 500 CD ARG A 388 O HOH A 1556 2.04 REMARK 500 CG LYS A 390 O HOH A 1410 2.06 REMARK 500 NH2 ARG A 388 O HOH A 1702 2.06 REMARK 500 OE2 GLU A 135 O HOH A 1480 2.08 REMARK 500 OE1 GLU A 509 O HOH A 1311 2.11 REMARK 500 O LYS A 387 CG LYS A 390 2.13 REMARK 500 CB GLU A 354 O HOH A 1245 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 599 CB SER A 599 OG -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 22 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 49 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = 8.0 DEGREES REMARK 500 PHE A 61 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 GLU A 64 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP A 83 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 HIS A 99 CG - ND1 - CE1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 120 CG - CD - NE ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 120 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 HIS A 261 CA - CB - CG ANGL. DEV. = -12.6 DEGREES REMARK 500 MET A 276 CA - CB - CG ANGL. DEV. = -15.5 DEGREES REMARK 500 MET A 276 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 ASP A 330 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 438 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 462 CD - NE - CZ ANGL. DEV. = 50.8 DEGREES REMARK 500 ARG A 462 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 493 CB - CG - OD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 549 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TRP A 570 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 628 CD - NE - CZ ANGL. DEV. = 19.2 DEGREES REMARK 500 ARG A 628 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 58.09 -91.53 REMARK 500 ASP A 63 -163.50 -106.39 REMARK 500 LYS A 157 -165.34 -165.32 REMARK 500 CYS A 201 -124.01 -111.20 REMARK 500 ALA A 203 46.96 -149.51 REMARK 500 THR A 242 -155.98 -154.44 REMARK 500 ASN A 245 174.86 91.40 REMARK 500 HIS A 261 -38.15 -135.36 REMARK 500 CYS A 294 -155.64 55.97 REMARK 500 SER A 312 -125.48 52.38 REMARK 500 ASP A 330 -76.18 -114.16 REMARK 500 GLN A 332 132.33 75.92 REMARK 500 ALA A 405 -159.43 -149.70 REMARK 500 ASP A 454 -6.93 82.67 REMARK 500 MET A 560 -58.22 -135.91 REMARK 500 SER A 598 -62.22 -146.79 REMARK 500 TYR A 607 146.86 -174.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 446 ASN A 447 149.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 638 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 FES A 638 S1 107.6 REMARK 620 3 FES A 638 S2 116.7 105.0 REMARK 620 4 FES A 638 S1 115.1 107.5 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 638 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 47 SG REMARK 620 2 FES A 638 S1 118.2 REMARK 620 3 FES A 638 S2 113.8 104.5 REMARK 620 4 FES A 638 S2 107.5 103.7 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 637 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 48 SG REMARK 620 2 SF4 A 637 S1 112.6 REMARK 620 3 SF4 A 637 S3 117.3 104.6 REMARK 620 4 SF4 A 637 S4 108.9 108.9 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 637 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 SF4 A 637 S1 119.6 REMARK 620 3 SF4 A 637 S2 101.1 104.7 REMARK 620 4 SF4 A 637 S3 121.8 103.3 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 637 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 SG REMARK 620 2 SF4 A 637 S1 114.7 REMARK 620 3 SF4 A 637 S2 117.0 105.0 REMARK 620 4 SF4 A 637 S4 107.9 107.3 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 637 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 SF4 A 637 S2 109.4 REMARK 620 3 SF4 A 637 S3 119.2 104.3 REMARK 620 4 SF4 A 637 S4 115.1 104.1 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS A 639 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 261 NE2 REMARK 620 2 NFS A 639 S1 96.1 REMARK 620 3 NFS A 639 S2 100.2 132.0 REMARK 620 4 CYS A 295 SG 103.6 103.7 115.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS A 639 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 294 SG REMARK 620 2 NFS A 639 S1 107.3 REMARK 620 3 NFS A 639 S4 119.4 87.7 REMARK 620 4 NFS A 639 S5 173.6 66.4 62.7 REMARK 620 5 CYS A 476 SG 116.7 120.7 102.3 67.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS A 639 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 333 SG REMARK 620 2 NFS A 639 S1 112.6 REMARK 620 3 NFS A 639 S3 100.7 119.8 REMARK 620 4 NFS A 639 S4 118.4 99.3 106.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS A 639 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 446 SG REMARK 620 2 NFS A 639 S3 106.6 REMARK 620 3 NFS A 639 S4 107.3 110.7 REMARK 620 4 NFS A 639 S5 122.8 102.8 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS A 639 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 476 SG REMARK 620 2 NFS A 639 S1 117.1 REMARK 620 3 NFS A 639 S4 119.1 100.8 REMARK 620 4 NFS A 639 S5 107.0 106.5 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFS A 639 NI1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 526 SG REMARK 620 2 NFS A 639 S2 87.7 REMARK 620 3 NFS A 639 S3 177.6 89.9 REMARK 620 4 NFS A 639 S5 82.5 153.3 99.6 REMARK 620 5 HOH A1436 O 94.9 94.1 85.5 111.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 637 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 638 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NFS A 639 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SU6 RELATED DB: PDB REMARK 900 RELATED ID: 1SU8 RELATED DB: PDB REMARK 900 RELATED ID: 1SUF RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS INFORMED THAT THE COMPLETE SEQUENCE OF REMARK 999 CARBOXYDOTHERMUS HYDROGENOFORMANS HAS BEEN DETERMINED REMARK 999 AND THAT THE PRELIMINARY RESULTS ARE AVAILABLE THROUGH REMARK 999 THE TIGR HOME PAGE (WWW.TIGR.ORG). DBREF 1SU7 A 2 636 UNP Q9F8A8 COOS2_CARHZ 1 635 SEQRES 1 A 636 MET ALA LYS GLN ASN LEU LYS SER THR ASP ARG ALA VAL SEQRES 2 A 636 GLN GLN MET LEU ASP LYS ALA LYS ARG GLU GLY ILE GLN SEQRES 3 A 636 THR VAL TRP ASP ARG TYR GLU ALA MET LYS PRO GLN CYS SEQRES 4 A 636 GLY PHE GLY GLU THR GLY LEU CYS CYS ARG HIS CYS LEU SEQRES 5 A 636 GLN GLY PRO CYS ARG ILE ASN PRO PHE GLY ASP GLU PRO SEQRES 6 A 636 LYS VAL GLY ILE CYS GLY ALA THR ALA GLU VAL ILE VAL SEQRES 7 A 636 ALA ARG GLY LEU ASP ARG SER ILE ALA ALA GLY ALA ALA SEQRES 8 A 636 GLY HIS SER GLY HIS ALA LYS HIS LEU ALA HIS THR LEU SEQRES 9 A 636 LYS LYS ALA VAL GLN GLY LYS ALA ALA SER TYR MET ILE SEQRES 10 A 636 LYS ASP ARG THR LYS LEU HIS SER ILE ALA LYS ARG LEU SEQRES 11 A 636 GLY ILE PRO THR GLU GLY GLN LYS ASP GLU ASP ILE ALA SEQRES 12 A 636 LEU GLU VAL ALA LYS ALA ALA LEU ALA ASP PHE HIS GLU SEQRES 13 A 636 LYS ASP THR PRO VAL LEU TRP VAL THR THR VAL LEU PRO SEQRES 14 A 636 PRO SER ARG VAL LYS VAL LEU SER ALA HIS GLY LEU ILE SEQRES 15 A 636 PRO ALA GLY ILE ASP HIS GLU ILE ALA GLU ILE MET HIS SEQRES 16 A 636 ARG THR SER MET GLY CYS ASP ALA ASP ALA GLN ASN LEU SEQRES 17 A 636 LEU LEU GLY GLY LEU ARG CYS SER LEU ALA ASP LEU ALA SEQRES 18 A 636 GLY CYS TYR MET GLY THR ASP LEU ALA ASP ILE LEU PHE SEQRES 19 A 636 GLY THR PRO ALA PRO VAL VAL THR GLU SER ASN LEU GLY SEQRES 20 A 636 VAL LEU LYS ALA ASP ALA VAL ASN VAL ALA VAL HIS GLY SEQRES 21 A 636 HIS ASN PRO VAL LEU SER ASP ILE ILE VAL SER VAL SER SEQRES 22 A 636 LYS GLU MET GLU ASN GLU ALA ARG ALA ALA GLY ALA THR SEQRES 23 A 636 GLY ILE ASN VAL VAL GLY ILE CYS CYS THR GLY ASN GLU SEQRES 24 A 636 VAL LEU MET ARG HIS GLY ILE PRO ALA CYS THR HIS SER SEQRES 25 A 636 VAL SER GLN GLU MET ALA MET ILE THR GLY ALA LEU ASP SEQRES 26 A 636 ALA MET ILE LEU ASP TYR GLN CYS ILE GLN PRO SER VAL SEQRES 27 A 636 ALA THR ILE ALA GLU CYS THR GLY THR THR VAL ILE THR SEQRES 28 A 636 THR MET GLU MET SER LYS ILE THR GLY ALA THR HIS VAL SEQRES 29 A 636 ASN PHE ALA GLU GLU ALA ALA VAL GLU ASN ALA LYS GLN SEQRES 30 A 636 ILE LEU ARG LEU ALA ILE ASP THR PHE LYS ARG ARG LYS SEQRES 31 A 636 GLY LYS PRO VAL GLU ILE PRO ASN ILE LYS THR LYS VAL SEQRES 32 A 636 VAL ALA GLY PHE SER THR GLU ALA ILE ILE ASN ALA LEU SEQRES 33 A 636 SER LYS LEU ASN ALA ASN ASP PRO LEU LYS PRO LEU ILE SEQRES 34 A 636 ASP ASN VAL VAL ASN GLY ASN ILE ARG GLY VAL CYS LEU SEQRES 35 A 636 PHE ALA GLY CYS ASN ASN VAL LYS VAL PRO GLN ASP GLN SEQRES 36 A 636 ASN PHE THR THR ILE ALA ARG LYS LEU LEU LYS GLN ASN SEQRES 37 A 636 VAL LEU VAL VAL ALA THR GLY CYS GLY ALA GLY ALA LEU SEQRES 38 A 636 MET ARG HIS GLY PHE MET ASP PRO ALA ASN VAL ASP GLU SEQRES 39 A 636 LEU CYS GLY ASP GLY LEU LYS ALA VAL LEU THR ALA ILE SEQRES 40 A 636 GLY GLU ALA ASN GLY LEU GLY GLY PRO LEU PRO PRO VAL SEQRES 41 A 636 LEU HIS MET GLY SER CYS VAL ASP ASN SER ARG ALA VAL SEQRES 42 A 636 ALA LEU VAL ALA ALA LEU ALA ASN ARG LEU GLY VAL ASP SEQRES 43 A 636 LEU ASP ARG LEU PRO VAL VAL ALA SER ALA ALA GLU ALA SEQRES 44 A 636 MET HIS GLU LYS ALA VAL ALA ILE GLY THR TRP ALA VAL SEQRES 45 A 636 THR ILE GLY LEU PRO THR HIS ILE GLY VAL LEU PRO PRO SEQRES 46 A 636 ILE THR GLY SER LEU PRO VAL THR GLN ILE LEU THR SER SEQRES 47 A 636 SER VAL LYS ASP ILE THR GLY GLY TYR PHE ILE VAL GLU SEQRES 48 A 636 LEU ASP PRO GLU THR ALA ALA ASP LYS LEU LEU ALA ALA SEQRES 49 A 636 ILE ASN GLU ARG ARG ALA GLY LEU GLY LEU PRO TRP HET SF4 A 637 8 HET FES A 638 4 HET NFS A 639 11 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM NFS FE(4)-NI(1)-S(5) CLUSTER FORMUL 2 SF4 FE4 S4 FORMUL 3 FES FE2 S2 FORMUL 4 NFS FE4 NI S5 FORMUL 5 HOH *1167(H2 O) HELIX 1 1 ASP A 10 GLY A 24 1 15 HELIX 2 2 THR A 27 LYS A 36 1 10 HELIX 3 3 CYS A 39 GLY A 45 1 7 HELIX 4 4 THR A 73 GLN A 109 1 37 HELIX 5 5 ASP A 119 GLY A 131 1 13 HELIX 6 6 LYS A 138 ASP A 153 1 16 HELIX 7 7 VAL A 161 THR A 166 1 6 HELIX 8 8 PRO A 169 HIS A 179 1 11 HELIX 9 9 GLY A 185 THR A 197 1 13 HELIX 10 10 ASP A 204 GLY A 235 1 32 HELIX 11 11 ASN A 245 LEU A 249 5 5 HELIX 12 12 ASN A 262 MET A 276 1 15 HELIX 13 13 MET A 276 ALA A 283 1 8 HELIX 14 14 CYS A 294 GLY A 305 1 12 HELIX 15 15 HIS A 311 VAL A 313 5 3 HELIX 16 16 SER A 314 THR A 321 1 8 HELIX 17 17 PRO A 336 GLY A 346 1 11 HELIX 18 18 ALA A 367 GLU A 369 5 3 HELIX 19 19 ALA A 370 ARG A 389 1 20 HELIX 20 20 SER A 408 LYS A 418 1 11 HELIX 21 21 PRO A 424 GLY A 435 1 12 HELIX 22 22 ASP A 454 GLN A 467 1 14 HELIX 23 23 GLY A 475 HIS A 484 1 10 HELIX 24 24 ASP A 488 ALA A 490 5 3 HELIX 25 25 ASN A 491 CYS A 496 1 6 HELIX 26 26 GLY A 497 ASN A 511 1 15 HELIX 27 27 ASP A 528 GLY A 544 1 17 HELIX 28 28 ASP A 546 LEU A 550 5 5 HELIX 29 29 HIS A 561 GLY A 575 1 15 HELIX 30 30 SER A 589 SER A 598 1 10 HELIX 31 31 VAL A 600 GLY A 605 1 6 HELIX 32 32 ASP A 613 LEU A 632 1 20 SHEET 1 A 2 CYS A 47 CYS A 48 0 SHEET 2 A 2 CYS A 56 ARG A 57 -1 O CYS A 56 N CYS A 48 SHEET 1 B 2 VAL A 240 SER A 244 0 SHEET 2 B 2 THR A 401 ALA A 405 -1 O VAL A 403 N THR A 242 SHEET 1 C 6 ALA A 308 THR A 310 0 SHEET 2 C 6 ILE A 288 ILE A 293 1 N GLY A 292 O CYS A 309 SHEET 3 C 6 VAL A 254 HIS A 259 1 N VAL A 254 O ASN A 289 SHEET 4 C 6 LEU A 324 LEU A 329 1 O ILE A 328 N ALA A 257 SHEET 5 C 6 THR A 348 THR A 351 1 O ILE A 350 N LEU A 329 SHEET 6 C 6 THR A 362 HIS A 363 1 O THR A 362 N THR A 351 SHEET 1 D 6 VAL A 520 GLY A 524 0 SHEET 2 D 6 LEU A 470 THR A 474 1 N ALA A 473 O MET A 523 SHEET 3 D 6 VAL A 440 PHE A 443 1 N PHE A 443 O VAL A 472 SHEET 4 D 6 VAL A 552 ALA A 556 1 O SER A 555 N LEU A 442 SHEET 5 D 6 PRO A 577 ILE A 580 1 O HIS A 579 N ALA A 554 SHEET 6 D 6 TYR A 607 VAL A 610 1 O TYR A 607 N THR A 578 LINK SG CYS A 39 FE2 FES A 638 1555 1555 2.26 LINK SG CYS A 47 FE1 FES A 638 1555 1555 2.24 LINK SG CYS A 48 FE2 SF4 A 637 1555 1555 2.27 LINK SG CYS A 51 FE4 SF4 A 637 1555 1555 2.25 LINK SG CYS A 56 FE3 SF4 A 637 1555 1555 2.26 LINK SG CYS A 70 FE1 SF4 A 637 1555 1555 2.28 LINK NE2 HIS A 261 FE1 NFS A 639 1555 1555 2.08 LINK SG CYS A 294 FE2 BNFS A 639 1555 1555 2.62 LINK SG CYS A 295 FE1 NFS A 639 1555 1555 2.34 LINK SG CYS A 333 FE4 NFS A 639 1555 1555 2.21 LINK SG CYS A 446 FE3 NFS A 639 1555 1555 2.29 LINK SG CYS A 476 FE2 BNFS A 639 1555 1555 2.28 LINK SG CYS A 476 FE2 ANFS A 639 1555 1555 2.32 LINK SG CYS A 526 NI1 NFS A 639 1555 1555 2.32 LINK FE1 FES A 638 S2 FES A 638 1555 2656 2.29 LINK FE2 FES A 638 S1 FES A 638 1555 2656 2.28 LINK NI1 NFS A 639 O HOH A1436 1555 1555 2.29 CISPEP 1 LYS A 36 PRO A 37 0 -3.80 CISPEP 2 GLY A 54 PRO A 55 0 6.26 CISPEP 3 GLU A 64 PRO A 65 0 1.34 SITE 1 AC1 9 CYS A 48 CYS A 51 GLN A 53 GLY A 54 SITE 2 AC1 9 CYS A 56 ILE A 69 CYS A 70 ARG A 80 SITE 3 AC1 9 MET A 199 SITE 1 AC2 4 CYS A 39 GLY A 42 CYS A 47 ARG A 49 SITE 1 AC3 15 HIS A 93 HIS A 261 CYS A 294 CYS A 295 SITE 2 AC3 15 SER A 312 CYS A 333 GLY A 445 CYS A 446 SITE 3 AC3 15 CYS A 476 CYS A 526 MET A 560 HIS A 561 SITE 4 AC3 15 LYS A 563 HOH A1436 HOH A1471 CRYST1 111.616 73.825 70.832 90.00 111.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008959 0.000000 0.003470 0.00000 SCALE2 0.000000 0.013546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015140 0.00000