HEADER TRANSPORT PROTEIN 26-MAR-04 1SUM TITLE CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN AT 2.0 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATE TRANSPORT SYSTEM PROTEIN PHOU HOMOLOG 2; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PSJS1244 STAR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PB4 KEYWDS PHOU, ABC TRANSPORT, PST, STRUCTURAL GENOMICS, BERKELEY STRUCTURAL KEYWDS 2 GENOMICS CENTER, BSGC, STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,Y.LOU,H.YOKOTA,P.D.ADAMS,R.KIM,S.H.KIM,BERKELEY STRUCTURAL AUTHOR 2 GENOMICS CENTER (BSGC) REVDAT 6 11-OCT-17 1SUM 1 REMARK REVDAT 5 13-JUL-11 1SUM 1 VERSN REVDAT 4 24-FEB-09 1SUM 1 VERSN REVDAT 3 10-MAY-05 1SUM 1 JRNL REVDAT 2 28-DEC-04 1SUM 1 AUTHOR JRNL KEYWDS REVDAT 1 24-AUG-04 1SUM 0 JRNL AUTH J.LIU,Y.LOU,H.YOKOTA,P.D.ADAMS,R.KIM,S.H.KIM JRNL TITL CRYSTAL STRUCTURE OF A PHOU PROTEIN HOMOLOGUE: A NEW CLASS JRNL TITL 2 OF METALLOPROTEIN CONTAINING MULTINUCLEAR IRON CLUSTERS. JRNL REF J.BIOL.CHEM. V. 280 15960 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15716271 JRNL DOI 10.1074/JBC.M414117200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1205 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 931 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.98000 REMARK 3 B22 (A**2) : -1.98000 REMARK 3 B33 (A**2) : 2.97000 REMARK 3 B12 (A**2) : -0.99000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1836 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1735 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2470 ; 1.196 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4055 ; 0.773 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 5.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1978 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 330 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 495 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2029 ; 0.222 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1125 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 48 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 57 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.499 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1124 ; 0.734 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1820 ; 1.351 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 712 ; 2.225 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 650 ; 3.742 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8060 45.2574 9.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.2432 T22: 0.2468 REMARK 3 T33: 0.1376 T12: 0.0357 REMARK 3 T13: 0.0602 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 4.9956 L22: 7.9526 REMARK 3 L33: 1.1340 L12: 3.7840 REMARK 3 L13: -0.4826 L23: -0.3224 REMARK 3 S TENSOR REMARK 3 S11: 0.3172 S12: -0.5243 S13: 0.6701 REMARK 3 S21: 0.5548 S22: -0.3191 S23: 0.5441 REMARK 3 S31: -0.2101 S32: -0.0216 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8522 27.0792 10.8854 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.2466 REMARK 3 T33: 0.0240 T12: 0.0330 REMARK 3 T13: -0.0134 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 6.2934 L22: 8.5804 REMARK 3 L33: 1.6211 L12: 4.5007 REMARK 3 L13: 1.1619 L23: 0.9628 REMARK 3 S TENSOR REMARK 3 S11: 0.3024 S12: -0.5150 S13: -0.4869 REMARK 3 S21: 0.7144 S22: -0.3077 S23: -0.3799 REMARK 3 S31: 0.1203 S32: 0.0316 S33: 0.0053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1SUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796, 0.9798, 0.9600 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES, 100MM CACL2, 25% PEG 400, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.08500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.17000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.17000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.08500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -227.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 227 REMARK 465 GLY B 228 REMARK 465 VAL B 229 REMARK 465 LEU B 230 REMARK 465 PHE B 231 REMARK 465 GLU B 232 REMARK 465 SER B 233 REMARK 465 SER B 234 REMARK 465 ASP B 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 226 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 613 O HOH B 613 4555 1.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 217 C ASP B 218 N -0.206 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 217 CA - C - N ANGL. DEV. = 17.6 DEGREES REMARK 500 HIS B 217 O - C - N ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 117 -58.49 -127.47 REMARK 500 HIS B 217 -124.12 45.12 REMARK 500 PHE B 223 103.60 -51.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 236 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 7 OE1 105.2 REMARK 620 3 GLU B 106 OE1 170.9 68.6 REMARK 620 4 GLU B 109 OE1 106.2 76.6 79.3 REMARK 620 5 GLU B 109 OE2 87.4 127.1 101.6 50.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 237 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO3 B 569 O2 REMARK 620 2 PO3 B 569 O3 58.2 REMARK 620 3 GLU B 49 OE2 95.6 93.2 REMARK 620 4 GLU B 91 OE1 89.3 96.4 170.4 REMARK 620 5 ASP B 95 OD1 66.3 124.4 89.6 84.8 REMARK 620 6 HOH B 615 O 142.0 159.5 88.1 83.0 75.9 REMARK 620 7 ASP B 53 OD1 137.6 80.3 95.4 86.5 154.5 79.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 238 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO3 B 569 O1 REMARK 620 2 HOH B 628 O 75.0 REMARK 620 3 GLU B 91 OE1 67.7 138.7 REMARK 620 4 ASP B 95 OD2 97.1 92.8 75.3 REMARK 620 5 HOH B 589 O 92.6 81.9 116.1 167.4 REMARK 620 6 GLU B 91 OE2 93.6 152.1 50.2 114.1 73.1 REMARK 620 7 ASN B 92 OD1 168.6 110.8 109.2 92.5 78.8 76.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 239 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 589 O REMARK 620 2 GLU B 91 OE2 71.6 REMARK 620 3 HOH B 579 O 82.4 152.3 REMARK 620 4 GLU B 56 OE2 154.3 82.8 123.2 REMARK 620 5 GLU B 88 OE1 78.6 87.0 97.4 98.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 240 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO3 B 568 O3 REMARK 620 2 GLU B 191 OE2 62.3 REMARK 620 3 ASP B 195 OD1 78.8 92.1 REMARK 620 4 ASP B 152 OD1 123.9 173.4 91.5 REMARK 620 5 HOH B 603 O 143.1 85.6 85.0 89.1 REMARK 620 6 PO3 B 568 O1 57.2 113.3 101.1 71.4 159.6 REMARK 620 7 ASP B 156 OD1 99.6 88.0 178.1 88.7 96.9 77.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 241 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 191 OE1 REMARK 620 2 GLU B 191 OE2 53.3 REMARK 620 3 ASP B 195 OD2 90.1 88.6 REMARK 620 4 PO3 B 568 O3 121.9 68.6 89.5 REMARK 620 5 HOH B 624 O 75.8 127.5 105.0 157.6 REMARK 620 6 HOH B 634 O 156.7 149.5 86.8 81.2 82.7 REMARK 620 7 HOH B 627 O 95.1 85.5 167.5 78.1 87.3 92.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 242 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 156 OD2 REMARK 620 2 PO3 B 568 O1 78.8 REMARK 620 3 HOH B 573 O 167.5 97.4 REMARK 620 4 HOH B 590 O 103.9 176.5 80.5 REMARK 620 5 ASP B 152 OD1 89.3 82.4 78.3 99.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 592 O REMARK 620 2 HOH B 611 O 71.6 REMARK 620 3 GLU B 50 OE1 51.6 115.2 REMARK 620 4 GLU B 49 OE2 104.4 91.8 127.0 REMARK 620 5 ASP B 53 OD2 137.3 150.4 93.2 76.1 REMARK 620 6 GLU B 49 OE1 57.4 93.9 81.1 50.8 98.7 REMARK 620 7 LYS B 214 NZ 108.0 101.7 73.4 147.3 77.6 153.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 B 568 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 B 569 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BSGCAIR30480 RELATED DB: TARGETDB DBREF 1SUM B 1 235 UNP Q9X256 PHOU2_THEMA 1 235 SEQRES 1 B 235 MET ASN ARG LEU LEU ASN GLU LYS VAL GLU GLU PHE LYS SEQRES 2 B 235 LYS GLY VAL LEU LYS ALA GLY TRP PHE ILE GLU LYS MET SEQRES 3 B 235 PHE ARG ASN SER ILE SER SER LEU VAL GLU ARG ASN GLU SEQRES 4 B 235 SER LEU ALA ARG GLU VAL ILE ALA ASP GLU GLU VAL VAL SEQRES 5 B 235 ASP GLN MET GLU VAL GLU ILE GLN GLU LYS ALA MET GLU SEQRES 6 B 235 VAL LEU GLY LEU PHE SER PRO ILE GLY LYS PRO LEU LEU SEQRES 7 B 235 THR VAL THR ALA GLY ILE ARG VAL ALA GLU LEU ILE GLU SEQRES 8 B 235 ASN ILE ALA ASP LYS CYS HIS ASP ILE ALA LYS ASN VAL SEQRES 9 B 235 LEU GLU LEU MET GLU GLU PRO PRO LEU LYS PRO LEU GLU SEQRES 10 B 235 ASP ILE PRO ALA MET ALA ASN GLN THR SER GLU MET LEU SEQRES 11 B 235 LYS PHE ALA LEU ARG MET PHE ALA ASP VAL ASN VAL GLU SEQRES 12 B 235 LYS SER PHE GLU VAL CYS ARG MET ASP SER LYS VAL ASP SEQRES 13 B 235 ASP LEU TYR GLU LYS VAL ARG GLU GLU LEU LEU LEU TYR SEQRES 14 B 235 MET MET GLU SER PRO LYS TYR VAL LYS ARG ALA LEU LEU SEQRES 15 B 235 LEU LEU GLU ILE ALA GLY ASN ILE GLU ILE ILE ALA ASP SEQRES 16 B 235 TYR ALA THR ASN ILE VAL GLU VAL SER VAL TYR MET VAL SEQRES 17 B 235 GLN GLY GLU ALA TYR LYS CYS TYR HIS ASP GLU LEU LEU SEQRES 18 B 235 LEU PHE LYS LYS SER GLY GLY VAL LEU PHE GLU SER SER SEQRES 19 B 235 ASP HET FE B 236 1 HET FE B 237 1 HET FE B 238 1 HET FE B 239 1 HET FE B 240 1 HET FE B 241 1 HET FE B 242 1 HET NI B 301 1 HET CA B 401 1 HET PO3 B 568 4 HET PO3 B 569 4 HETNAM FE FE (III) ION HETNAM NI NICKEL (II) ION HETNAM CA CALCIUM ION HETNAM PO3 PHOSPHITE ION FORMUL 2 FE 7(FE 3+) FORMUL 9 NI NI 2+ FORMUL 10 CA CA 2+ FORMUL 11 PO3 2(O3 P 3-) FORMUL 13 HOH *78(H2 O) HELIX 1 1 LEU B 4 ARG B 37 1 34 HELIX 2 2 ASN B 38 SER B 71 1 34 HELIX 3 3 GLY B 74 MET B 108 1 35 HELIX 4 4 GLU B 117 ASP B 139 1 23 HELIX 5 5 ASN B 141 PHE B 146 1 6 HELIX 6 6 PHE B 146 SER B 173 1 28 HELIX 7 7 TYR B 176 GLY B 210 1 35 SHEET 1 A 2 TYR B 213 TYR B 216 0 SHEET 2 A 2 GLU B 219 LEU B 222 -1 O GLU B 219 N TYR B 216 SSBOND 1 CYS B 149 CYS B 215 1555 1555 2.05 LINK FE FE B 236 OE2 GLU B 11 1555 1555 2.27 LINK FE FE B 236 OE1 GLU B 7 1555 1555 2.45 LINK FE FE B 237 O2 PO3 B 569 1555 1555 2.58 LINK FE FE B 237 O3 PO3 B 569 1555 1555 2.38 LINK FE FE B 237 OE2 GLU B 49 1555 1555 2.34 LINK FE FE B 237 OE1 GLU B 91 1555 1555 2.26 LINK FE FE B 237 OD1 ASP B 95 1555 1555 2.36 LINK FE FE B 237 O HOH B 615 1555 1555 2.25 LINK FE FE B 237 OD1 ASP B 53 1555 1555 2.34 LINK FE FE B 238 O1 PO3 B 569 1555 1555 2.69 LINK FE FE B 238 O HOH B 628 1555 1555 2.58 LINK FE FE B 238 OE1 GLU B 91 1555 1555 2.66 LINK FE FE B 238 OD2 ASP B 95 1555 1555 2.34 LINK FE FE B 238 O HOH B 589 1555 1555 2.60 LINK FE FE B 238 OE2 GLU B 91 1555 1555 2.43 LINK FE FE B 238 OD1 ASN B 92 1555 1555 2.45 LINK FE FE B 239 O HOH B 589 1555 1555 2.66 LINK FE FE B 239 OE2 GLU B 91 1555 1555 2.46 LINK FE FE B 239 O HOH B 579 1555 1555 2.73 LINK FE FE B 239 OE2 GLU B 56 1555 1555 2.44 LINK FE FE B 239 OE1 GLU B 88 1555 1555 2.27 LINK FE FE B 240 O3 PO3 B 568 1555 1555 2.62 LINK FE FE B 240 OE2 GLU B 191 1555 1555 2.37 LINK FE FE B 240 OD1 ASP B 195 1555 1555 2.34 LINK FE FE B 240 OD1 ASP B 152 1555 1555 2.51 LINK FE FE B 240 O HOH B 603 1555 1555 2.27 LINK FE FE B 240 O1 PO3 B 568 1555 1555 2.60 LINK FE FE B 240 OD1 ASP B 156 1555 1555 2.35 LINK FE FE B 241 OE1 GLU B 191 1555 1555 2.51 LINK FE FE B 241 OE2 GLU B 191 1555 1555 2.36 LINK FE FE B 241 OD2 ASP B 195 1555 1555 2.26 LINK FE FE B 241 O3 PO3 B 568 1555 1555 2.24 LINK FE FE B 241 O HOH B 624 1555 1555 2.34 LINK FE FE B 241 O HOH B 634 1555 1555 2.40 LINK FE FE B 241 O HOH B 627 1555 1555 2.19 LINK FE FE B 242 OD2 ASP B 156 1555 1555 2.42 LINK FE FE B 242 O1 PO3 B 568 1555 1555 2.11 LINK FE FE B 242 O HOH B 573 1555 1555 2.26 LINK FE FE B 242 O HOH B 590 1555 1555 2.41 LINK FE FE B 242 OD1 ASP B 152 1555 1555 2.40 LINK NI NI B 301 O HOH B 592 1555 1555 2.69 LINK NI NI B 301 O HOH B 611 1555 1555 2.02 LINK NI NI B 301 OE1 GLU B 50 1555 1555 2.63 LINK NI NI B 301 OE2 GLU B 49 1555 1555 2.52 LINK NI NI B 301 OD2 ASP B 53 1555 1555 2.29 LINK NI NI B 301 OE1 GLU B 49 1555 1555 2.54 LINK FE FE B 236 OE1 GLU B 106 1555 2665 2.46 LINK FE FE B 236 OE1 GLU B 109 1555 2665 2.67 LINK FE FE B 236 OE2 GLU B 109 1555 2665 2.36 LINK NI NI B 301 NZ LYS B 214 1555 4555 2.38 LINK CA CA B 401 NE ARG B 163 1555 4555 3.26 SITE 1 AC1 4 GLU B 7 GLU B 11 GLU B 106 GLU B 109 SITE 1 AC2 6 GLU B 49 ASP B 53 GLU B 91 ASP B 95 SITE 2 AC2 6 PO3 B 569 HOH B 615 SITE 1 AC3 6 GLU B 91 ASN B 92 ASP B 95 PO3 B 569 SITE 2 AC3 6 HOH B 589 HOH B 628 SITE 1 AC4 5 GLU B 56 GLU B 88 GLU B 91 HOH B 579 SITE 2 AC4 5 HOH B 589 SITE 1 AC5 6 ASP B 152 ASP B 156 GLU B 191 ASP B 195 SITE 2 AC5 6 PO3 B 568 HOH B 603 SITE 1 AC6 6 GLU B 191 ASP B 195 PO3 B 568 HOH B 624 SITE 2 AC6 6 HOH B 627 HOH B 634 SITE 1 AC7 5 ASP B 152 ASP B 156 PO3 B 568 HOH B 573 SITE 2 AC7 5 HOH B 590 SITE 1 AC8 7 GLU B 49 GLU B 50 ASP B 53 LYS B 214 SITE 2 AC8 7 PO3 B 569 HOH B 592 HOH B 611 SITE 1 AC9 1 ARG B 163 SITE 1 BC1 9 ASP B 152 ASP B 156 GLU B 191 ASP B 195 SITE 2 BC1 9 FE B 240 FE B 241 FE B 242 HOH B 627 SITE 3 BC1 9 HOH B 634 SITE 1 BC2 8 GLU B 49 ASP B 53 GLU B 91 ASP B 95 SITE 2 BC2 8 ASN B 199 FE B 237 FE B 238 NI B 301 CRYST1 90.677 90.677 45.255 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011028 0.006367 -0.000001 0.00000 SCALE2 0.000000 0.012734 -0.000001 0.00000 SCALE3 0.000000 0.000000 0.022097 0.00000