HEADER HYDROLASE 29-MAR-04 1SVJ TITLE THE SOLUTION STRUCTURE OF THE NUCLEOTIDE BINDING DOMAIN OF KDPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM-TRANSPORTING ATPASE B CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: POTASSIUM-TRANSLOCATING ATPASE B CHAIN, ATP PHOSPHOHYDROLASE COMPND 6 [POTASSIUM-TRANSPORTING] B CHAIN, POTASSIUM BINDING AND TRANSLOCATING COMPND 7 SUBUNIT B, KDPB N-DOMAIN, KDPBN, KDP B CHAIN N-DOMAIN; COMPND 8 EC: 3.6.3.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: KDPB, B0697; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS ALPHA-BETA SANDWICH, HYDROLASE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR M.HAUPT,M.BRAMKAMP,M.COLES,K.ALTENDORF,H.KESSLER REVDAT 3 02-MAR-22 1SVJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1SVJ 1 VERSN REVDAT 1 21-SEP-04 1SVJ 0 JRNL AUTH M.HAUPT,M.BRAMKAMP,M.COLES,K.ALTENDORF,H.KESSLER JRNL TITL INTER-DOMAIN MOTIONS OF THE N-DOMAIN OF THE KDPFABC COMPLEX, JRNL TITL 2 A P-TYPE ATPASE, ARE NOT DRIVEN BY ATP-INDUCED JRNL TITL 3 CONFORMATIONAL CHANGES. JRNL REF J.MOL.BIOL. V. 342 1547 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15364580 JRNL DOI 10.1016/J.JMB.2004.07.060 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH-2.9.3 NIH-2.9.3 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BASED ON A TOTAL OF 2232 NOE-BASED REMARK 3 DISTANCE RESTRAINTS, 256 DIHEDRAL ANGLE RESTRAINTS, 67 J- REMARK 3 RESTRAINTS AND 66 HYDROGEN BOND RESTRAINTS REMARK 4 REMARK 4 1SVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000022029. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM KDPBN U-15N,13C, 50MM REMARK 210 PHOSPHATE BUFFER, 100MM NACL, REMARK 210 0.05% SODIUM AZIDE; 1.2MM KDPBN REMARK 210 U-15N, 50MM PHOSPHATE BUFFER, REMARK 210 100MM NACL, 0.05% SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; CNH- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, X-PLOR NIH-2.9.3 REMARK 210 NIH-2.9.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 MET A 296 REMARK 465 GLY A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 SER A 308 REMARK 465 SER A 309 REMARK 465 GLY A 310 REMARK 465 HIS A 311 REMARK 465 GLY A 312 REMARK 465 GLY A 313 REMARK 465 ARG A 314 REMARK 465 HIS A 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 404 HD21 ASN A 408 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 321 147.08 -170.83 REMARK 500 PHE A 360 -35.31 -134.83 REMARK 500 ASN A 361 97.31 -160.62 REMARK 500 LEU A 362 89.71 -57.78 REMARK 500 GLU A 364 -151.41 -126.88 REMARK 500 ASP A 389 -62.98 -22.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U7Q RELATED DB: PDB REMARK 900 ENSEMBLE OF 20 STRUCTURES REMARK 900 RELATED ID: 1X6K RELATED DB: PDB REMARK 900 ATPPNP-BOUND FORM REMARK 900 RELATED ID: 6029 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS FREE PROTEIN REMARK 900 RELATED ID: 6030 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS ATPPNP-BOUND DBREF 1SVJ A 316 451 UNP P03960 ATKB_ECOLI 316 451 SEQADV 1SVJ MET A 296 UNP P03960 EXPRESSION TAG SEQADV 1SVJ GLY A 297 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 298 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 299 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 300 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 301 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 302 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 303 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 304 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 305 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 306 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 307 UNP P03960 EXPRESSION TAG SEQADV 1SVJ SER A 308 UNP P03960 EXPRESSION TAG SEQADV 1SVJ SER A 309 UNP P03960 EXPRESSION TAG SEQADV 1SVJ GLY A 310 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 311 UNP P03960 EXPRESSION TAG SEQADV 1SVJ GLY A 312 UNP P03960 EXPRESSION TAG SEQADV 1SVJ GLY A 313 UNP P03960 EXPRESSION TAG SEQADV 1SVJ ARG A 314 UNP P03960 EXPRESSION TAG SEQADV 1SVJ HIS A 315 UNP P03960 EXPRESSION TAG SEQRES 1 A 156 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 156 SER GLY HIS GLY GLY ARG HIS ASN ARG GLN ALA SER GLU SEQRES 3 A 156 PHE ILE PRO ALA GLN GLY VAL ASP GLU LYS THR LEU ALA SEQRES 4 A 156 ASP ALA ALA GLN LEU ALA SER LEU ALA ASP GLU THR PRO SEQRES 5 A 156 GLU GLY ARG SER ILE VAL ILE LEU ALA LYS GLN ARG PHE SEQRES 6 A 156 ASN LEU ARG GLU ARG ASP VAL GLN SER LEU HIS ALA THR SEQRES 7 A 156 PHE VAL PRO PHE THR ALA GLN SER ARG MET SER GLY ILE SEQRES 8 A 156 ASN ILE ASP ASN ARG MET ILE ARG LYS GLY SER VAL ASP SEQRES 9 A 156 ALA ILE ARG ARG HIS VAL GLU ALA ASN GLY GLY HIS PHE SEQRES 10 A 156 PRO THR ASP VAL ASP GLN LYS VAL ASP GLN VAL ALA ARG SEQRES 11 A 156 GLN GLY ALA THR PRO LEU VAL VAL VAL GLU GLY SER ARG SEQRES 12 A 156 VAL LEU GLY VAL ILE ALA LEU LYS ASP ILE VAL LYS GLY HELIX 1 1 ASP A 329 ALA A 343 1 15 HELIX 2 2 THR A 346 PHE A 360 1 15 HELIX 3 3 VAL A 398 GLY A 409 1 12 HELIX 4 4 PRO A 413 GLN A 426 1 14 SHEET 1 A 6 GLN A 318 PRO A 324 0 SHEET 2 A 6 VAL A 439 LYS A 446 -1 O VAL A 442 N ILE A 323 SHEET 3 A 6 ALA A 428 GLU A 435 -1 N LEU A 431 O ILE A 443 SHEET 4 A 6 ARG A 391 SER A 397 -1 N ARG A 394 O VAL A 434 SHEET 5 A 6 MET A 383 ILE A 388 -1 N SER A 384 O LYS A 395 SHEET 6 A 6 ALA A 372 THR A 378 -1 N THR A 373 O ASN A 387 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000