HEADER VIRAL PROTEIN 29-MAR-04 1SVL TITLE CO-CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN HELICASE DOMAIN AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARGE T ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: HELICASE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN VIRUS 40; SOURCE 3 ORGANISM_TAXID: 10633; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AAA+ FOLD, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.GAI,R.ZHAO,C.V.FINKIELSTEIN,X.S.CHEN REVDAT 3 14-FEB-24 1SVL 1 REMARK LINK REVDAT 2 24-FEB-09 1SVL 1 VERSN REVDAT 1 19-OCT-04 1SVL 0 JRNL AUTH D.GAI,R.ZHAO,D.LI,C.V.FINKIELSTEIN,X.S.CHEN JRNL TITL MECHANISMS OF CONFORMATIONAL CHANGE FOR A REPLICATIVE JRNL TITL 2 HEXAMERIC HELICASE OF SV40 LARGE TUMOR ANTIGEN. JRNL REF CELL(CAMBRIDGE,MASS.) V. 119 47 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15454080 JRNL DOI 10.1016/J.CELL.2004.09.017 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 87648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 9680 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3998 REMARK 3 BIN FREE R VALUE : 0.3919 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.230 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000022031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, MAGNESIUM CHLORIDE, PEG 8000, REMARK 280 DTT, PH 7.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.90600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.22100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.90600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.22100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL HEXAMER IS GENERATED FROM 2 ASU RELATED BY REMARK 300 CRYSTALLGRAPHIC 2-FOLD AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 114.88077 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 99.94175 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 251 REMARK 465 LEU A 252 REMARK 465 LYS A 253 REMARK 465 GLU A 254 REMARK 465 HIS A 255 REMARK 465 ASP A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 PRO A 259 REMARK 465 GLU A 260 REMARK 465 GLU A 261 REMARK 465 ALA A 262 REMARK 465 GLU A 263 REMARK 465 GLU A 264 REMARK 465 GLY B 251 REMARK 465 LEU B 252 REMARK 465 LYS B 253 REMARK 465 GLU B 254 REMARK 465 HIS B 255 REMARK 465 ASP B 256 REMARK 465 PHE B 257 REMARK 465 ASN B 258 REMARK 465 PRO B 259 REMARK 465 GLU B 260 REMARK 465 GLU B 261 REMARK 465 ALA B 262 REMARK 465 GLU B 263 REMARK 465 GLU B 264 REMARK 465 THR B 265 REMARK 465 GLY C 251 REMARK 465 LEU C 252 REMARK 465 LYS C 253 REMARK 465 GLU C 254 REMARK 465 HIS C 255 REMARK 465 ASP C 256 REMARK 465 PHE C 257 REMARK 465 ASN C 258 REMARK 465 PRO C 259 REMARK 465 GLU C 260 REMARK 465 GLU C 261 REMARK 465 ALA C 262 REMARK 465 GLU C 263 REMARK 465 GLU C 264 REMARK 465 THR C 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 313 -66.91 -104.85 REMARK 500 LYS A 418 -6.17 71.42 REMARK 500 ARG A 456 -9.87 -177.19 REMARK 500 GLU A 481 4.77 -66.24 REMARK 500 ARG A 483 31.93 -74.05 REMARK 500 LYS A 511 109.98 -162.99 REMARK 500 LYS A 512 56.02 85.68 REMARK 500 LEU A 514 136.55 179.96 REMARK 500 ASN A 515 79.00 -69.87 REMARK 500 ARG A 517 139.83 -175.95 REMARK 500 ASN A 529 -161.72 -77.26 REMARK 500 SER A 560 54.00 -140.60 REMARK 500 VAL A 625 -76.59 32.24 REMARK 500 SER B 381 -50.21 177.55 REMARK 500 LYS B 418 -0.49 67.40 REMARK 500 LEU B 454 24.03 -67.63 REMARK 500 ARG B 456 -9.57 -150.39 REMARK 500 ASP B 466 -1.73 71.01 REMARK 500 ASP B 474 73.21 46.26 REMARK 500 THR B 478 -10.95 -152.70 REMARK 500 ARG B 483 42.64 -106.22 REMARK 500 PRO B 486 176.15 -51.80 REMARK 500 LYS B 512 -158.05 66.05 REMARK 500 ASN B 515 147.18 -177.66 REMARK 500 ARG B 517 139.08 -171.68 REMARK 500 GLU B 530 75.61 18.97 REMARK 500 TYR B 531 -153.03 -103.10 REMARK 500 LYS C 308 56.21 37.46 REMARK 500 HIS C 313 -69.69 -103.64 REMARK 500 LYS C 418 -10.17 73.55 REMARK 500 ASP C 455 -80.88 -73.95 REMARK 500 ARG C 456 18.79 -69.07 REMARK 500 ASP C 466 13.95 57.59 REMARK 500 ASP C 484 67.06 66.65 REMARK 500 LEU C 514 120.32 -178.16 REMARK 500 ASN C 515 97.05 -58.06 REMARK 500 GLU C 530 38.41 90.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 750 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 165 O REMARK 620 2 HOH A 227 O 99.4 REMARK 620 3 HOH A 229 O 91.6 101.2 REMARK 620 4 HOH A 230 O 84.7 89.5 169.1 REMARK 620 5 THR A 433 OG1 87.8 170.6 84.6 85.0 REMARK 620 6 ADP A 800 O2B 167.8 92.2 82.1 99.5 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 302 SG REMARK 620 2 CYS A 305 SG 120.9 REMARK 620 3 HIS A 313 NE2 102.5 111.2 REMARK 620 4 HIS A 317 ND1 105.5 108.6 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 750 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 498 NH2 REMARK 620 2 HOH C 48 O 93.2 REMARK 620 3 HOH C 216 O 49.5 91.9 REMARK 620 4 HOH C 217 O 132.8 80.9 83.7 REMARK 620 5 HOH C 218 O 55.5 90.4 104.9 168.0 REMARK 620 6 THR C 433 OG1 150.5 80.0 158.1 74.9 95.6 REMARK 620 7 ADP C 800 O2B 104.9 161.5 97.3 84.2 102.5 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 750 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 222 O REMARK 620 2 HOH B 223 O 171.5 REMARK 620 3 HOH B 224 O 105.2 82.8 REMARK 620 4 THR B 433 OG1 96.9 75.2 157.7 REMARK 620 5 ADP B 800 O2B 95.7 80.8 94.7 85.4 REMARK 620 6 HOH C 125 O 98.0 84.9 86.4 88.0 165.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 302 SG REMARK 620 2 CYS B 305 SG 123.2 REMARK 620 3 HIS B 313 NE2 104.4 108.4 REMARK 620 4 HIS B 317 ND1 103.0 110.8 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 700 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 302 SG REMARK 620 2 CYS C 305 SG 117.9 REMARK 620 3 HIS C 313 NE2 104.0 112.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SVM RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ATP REMARK 900 RELATED ID: 1SVO RELATED DB: PDB REMARK 900 SAME PROTEIN DBREF 1SVL A 251 627 UNP P03070 TALA_SV40 251 627 DBREF 1SVL B 251 627 UNP P03070 TALA_SV40 251 627 DBREF 1SVL C 251 627 UNP P03070 TALA_SV40 251 627 SEQRES 1 A 377 GLY LEU LYS GLU HIS ASP PHE ASN PRO GLU GLU ALA GLU SEQRES 2 A 377 GLU THR LYS GLN VAL SER TRP LYS LEU VAL THR GLU TYR SEQRES 3 A 377 ALA MET GLU THR LYS CYS ASP ASP VAL LEU LEU LEU LEU SEQRES 4 A 377 GLY MET TYR LEU GLU PHE GLN TYR SER PHE GLU MET CYS SEQRES 5 A 377 LEU LYS CYS ILE LYS LYS GLU GLN PRO SER HIS TYR LYS SEQRES 6 A 377 TYR HIS GLU LYS HIS TYR ALA ASN ALA ALA ILE PHE ALA SEQRES 7 A 377 ASP SER LYS ASN GLN LYS THR ILE CYS GLN GLN ALA VAL SEQRES 8 A 377 ASP THR VAL LEU ALA LYS LYS ARG VAL ASP SER LEU GLN SEQRES 9 A 377 LEU THR ARG GLU GLN MET LEU THR ASN ARG PHE ASN ASP SEQRES 10 A 377 LEU LEU ASP ARG MET ASP ILE MET PHE GLY SER THR GLY SEQRES 11 A 377 SER ALA ASP ILE GLU GLU TRP MET ALA GLY VAL ALA TRP SEQRES 12 A 377 LEU HIS CYS LEU LEU PRO LYS MET ASP SER VAL VAL TYR SEQRES 13 A 377 ASP PHE LEU LYS CYS MET VAL TYR ASN ILE PRO LYS LYS SEQRES 14 A 377 ARG TYR TRP LEU PHE LYS GLY PRO ILE ASP SER GLY LYS SEQRES 15 A 377 THR THR LEU ALA ALA ALA LEU LEU GLU LEU CYS GLY GLY SEQRES 16 A 377 LYS ALA LEU ASN VAL ASN LEU PRO LEU ASP ARG LEU ASN SEQRES 17 A 377 PHE GLU LEU GLY VAL ALA ILE ASP GLN PHE LEU VAL VAL SEQRES 18 A 377 PHE GLU ASP VAL LYS GLY THR GLY GLY GLU SER ARG ASP SEQRES 19 A 377 LEU PRO SER GLY GLN GLY ILE ASN ASN LEU ASP ASN LEU SEQRES 20 A 377 ARG ASP TYR LEU ASP GLY SER VAL LYS VAL ASN LEU GLU SEQRES 21 A 377 LYS LYS HIS LEU ASN LYS ARG THR GLN ILE PHE PRO PRO SEQRES 22 A 377 GLY ILE VAL THR MET ASN GLU TYR SER VAL PRO LYS THR SEQRES 23 A 377 LEU GLN ALA ARG PHE VAL LYS GLN ILE ASP PHE ARG PRO SEQRES 24 A 377 LYS ASP TYR LEU LYS HIS CYS LEU GLU ARG SER GLU PHE SEQRES 25 A 377 LEU LEU GLU LYS ARG ILE ILE GLN SER GLY ILE ALA LEU SEQRES 26 A 377 LEU LEU MET LEU ILE TRP TYR ARG PRO VAL ALA GLU PHE SEQRES 27 A 377 ALA GLN SER ILE GLN SER ARG ILE VAL GLU TRP LYS GLU SEQRES 28 A 377 ARG LEU ASP LYS GLU PHE SER LEU SER VAL TYR GLN LYS SEQRES 29 A 377 MET LYS PHE ASN VAL ALA MET GLY ILE GLY VAL LEU ASP SEQRES 1 B 377 GLY LEU LYS GLU HIS ASP PHE ASN PRO GLU GLU ALA GLU SEQRES 2 B 377 GLU THR LYS GLN VAL SER TRP LYS LEU VAL THR GLU TYR SEQRES 3 B 377 ALA MET GLU THR LYS CYS ASP ASP VAL LEU LEU LEU LEU SEQRES 4 B 377 GLY MET TYR LEU GLU PHE GLN TYR SER PHE GLU MET CYS SEQRES 5 B 377 LEU LYS CYS ILE LYS LYS GLU GLN PRO SER HIS TYR LYS SEQRES 6 B 377 TYR HIS GLU LYS HIS TYR ALA ASN ALA ALA ILE PHE ALA SEQRES 7 B 377 ASP SER LYS ASN GLN LYS THR ILE CYS GLN GLN ALA VAL SEQRES 8 B 377 ASP THR VAL LEU ALA LYS LYS ARG VAL ASP SER LEU GLN SEQRES 9 B 377 LEU THR ARG GLU GLN MET LEU THR ASN ARG PHE ASN ASP SEQRES 10 B 377 LEU LEU ASP ARG MET ASP ILE MET PHE GLY SER THR GLY SEQRES 11 B 377 SER ALA ASP ILE GLU GLU TRP MET ALA GLY VAL ALA TRP SEQRES 12 B 377 LEU HIS CYS LEU LEU PRO LYS MET ASP SER VAL VAL TYR SEQRES 13 B 377 ASP PHE LEU LYS CYS MET VAL TYR ASN ILE PRO LYS LYS SEQRES 14 B 377 ARG TYR TRP LEU PHE LYS GLY PRO ILE ASP SER GLY LYS SEQRES 15 B 377 THR THR LEU ALA ALA ALA LEU LEU GLU LEU CYS GLY GLY SEQRES 16 B 377 LYS ALA LEU ASN VAL ASN LEU PRO LEU ASP ARG LEU ASN SEQRES 17 B 377 PHE GLU LEU GLY VAL ALA ILE ASP GLN PHE LEU VAL VAL SEQRES 18 B 377 PHE GLU ASP VAL LYS GLY THR GLY GLY GLU SER ARG ASP SEQRES 19 B 377 LEU PRO SER GLY GLN GLY ILE ASN ASN LEU ASP ASN LEU SEQRES 20 B 377 ARG ASP TYR LEU ASP GLY SER VAL LYS VAL ASN LEU GLU SEQRES 21 B 377 LYS LYS HIS LEU ASN LYS ARG THR GLN ILE PHE PRO PRO SEQRES 22 B 377 GLY ILE VAL THR MET ASN GLU TYR SER VAL PRO LYS THR SEQRES 23 B 377 LEU GLN ALA ARG PHE VAL LYS GLN ILE ASP PHE ARG PRO SEQRES 24 B 377 LYS ASP TYR LEU LYS HIS CYS LEU GLU ARG SER GLU PHE SEQRES 25 B 377 LEU LEU GLU LYS ARG ILE ILE GLN SER GLY ILE ALA LEU SEQRES 26 B 377 LEU LEU MET LEU ILE TRP TYR ARG PRO VAL ALA GLU PHE SEQRES 27 B 377 ALA GLN SER ILE GLN SER ARG ILE VAL GLU TRP LYS GLU SEQRES 28 B 377 ARG LEU ASP LYS GLU PHE SER LEU SER VAL TYR GLN LYS SEQRES 29 B 377 MET LYS PHE ASN VAL ALA MET GLY ILE GLY VAL LEU ASP SEQRES 1 C 377 GLY LEU LYS GLU HIS ASP PHE ASN PRO GLU GLU ALA GLU SEQRES 2 C 377 GLU THR LYS GLN VAL SER TRP LYS LEU VAL THR GLU TYR SEQRES 3 C 377 ALA MET GLU THR LYS CYS ASP ASP VAL LEU LEU LEU LEU SEQRES 4 C 377 GLY MET TYR LEU GLU PHE GLN TYR SER PHE GLU MET CYS SEQRES 5 C 377 LEU LYS CYS ILE LYS LYS GLU GLN PRO SER HIS TYR LYS SEQRES 6 C 377 TYR HIS GLU LYS HIS TYR ALA ASN ALA ALA ILE PHE ALA SEQRES 7 C 377 ASP SER LYS ASN GLN LYS THR ILE CYS GLN GLN ALA VAL SEQRES 8 C 377 ASP THR VAL LEU ALA LYS LYS ARG VAL ASP SER LEU GLN SEQRES 9 C 377 LEU THR ARG GLU GLN MET LEU THR ASN ARG PHE ASN ASP SEQRES 10 C 377 LEU LEU ASP ARG MET ASP ILE MET PHE GLY SER THR GLY SEQRES 11 C 377 SER ALA ASP ILE GLU GLU TRP MET ALA GLY VAL ALA TRP SEQRES 12 C 377 LEU HIS CYS LEU LEU PRO LYS MET ASP SER VAL VAL TYR SEQRES 13 C 377 ASP PHE LEU LYS CYS MET VAL TYR ASN ILE PRO LYS LYS SEQRES 14 C 377 ARG TYR TRP LEU PHE LYS GLY PRO ILE ASP SER GLY LYS SEQRES 15 C 377 THR THR LEU ALA ALA ALA LEU LEU GLU LEU CYS GLY GLY SEQRES 16 C 377 LYS ALA LEU ASN VAL ASN LEU PRO LEU ASP ARG LEU ASN SEQRES 17 C 377 PHE GLU LEU GLY VAL ALA ILE ASP GLN PHE LEU VAL VAL SEQRES 18 C 377 PHE GLU ASP VAL LYS GLY THR GLY GLY GLU SER ARG ASP SEQRES 19 C 377 LEU PRO SER GLY GLN GLY ILE ASN ASN LEU ASP ASN LEU SEQRES 20 C 377 ARG ASP TYR LEU ASP GLY SER VAL LYS VAL ASN LEU GLU SEQRES 21 C 377 LYS LYS HIS LEU ASN LYS ARG THR GLN ILE PHE PRO PRO SEQRES 22 C 377 GLY ILE VAL THR MET ASN GLU TYR SER VAL PRO LYS THR SEQRES 23 C 377 LEU GLN ALA ARG PHE VAL LYS GLN ILE ASP PHE ARG PRO SEQRES 24 C 377 LYS ASP TYR LEU LYS HIS CYS LEU GLU ARG SER GLU PHE SEQRES 25 C 377 LEU LEU GLU LYS ARG ILE ILE GLN SER GLY ILE ALA LEU SEQRES 26 C 377 LEU LEU MET LEU ILE TRP TYR ARG PRO VAL ALA GLU PHE SEQRES 27 C 377 ALA GLN SER ILE GLN SER ARG ILE VAL GLU TRP LYS GLU SEQRES 28 C 377 ARG LEU ASP LYS GLU PHE SER LEU SER VAL TYR GLN LYS SEQRES 29 C 377 MET LYS PHE ASN VAL ALA MET GLY ILE GLY VAL LEU ASP HET ZN A 700 1 HET MG A 750 1 HET ADP A 800 27 HET ZN B 700 1 HET MG B 750 1 HET ADP B 800 27 HET ZN C 700 1 HET MG C 750 1 HET ADP C 800 27 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 ZN 3(ZN 2+) FORMUL 5 MG 3(MG 2+) FORMUL 6 ADP 3(C10 H15 N5 O10 P2) FORMUL 13 HOH *231(H2 O) HELIX 1 1 SER A 269 LYS A 281 1 13 HELIX 2 2 ASP A 284 GLU A 294 1 11 HELIX 3 3 CYS A 302 LYS A 307 1 6 HELIX 4 4 GLN A 310 LYS A 315 1 6 HELIX 5 5 TYR A 316 ALA A 328 1 13 HELIX 6 6 ASN A 332 LEU A 355 1 24 HELIX 7 7 THR A 356 PHE A 376 1 21 HELIX 8 8 ASP A 383 HIS A 395 1 13 HELIX 9 9 LYS A 400 ASN A 415 1 16 HELIX 10 10 GLY A 431 GLY A 444 1 14 HELIX 11 11 ARG A 456 GLY A 462 1 7 HELIX 12 12 VAL A 463 ILE A 465 5 3 HELIX 13 13 GLY A 480 ASP A 484 5 5 HELIX 14 14 GLN A 489 ASP A 495 1 7 HELIX 15 15 LEU A 497 GLY A 503 1 7 HELIX 16 16 PRO A 534 ALA A 539 1 6 HELIX 17 17 LYS A 550 ARG A 559 1 10 HELIX 18 18 GLU A 561 LYS A 566 1 6 HELIX 19 19 SER A 571 ARG A 583 1 13 HELIX 20 20 PRO A 584 PHE A 588 5 5 HELIX 21 21 ILE A 592 PHE A 607 1 16 HELIX 22 22 SER A 608 GLY A 622 1 15 HELIX 23 23 SER B 269 LYS B 281 1 13 HELIX 24 24 ASP B 284 GLU B 294 1 11 HELIX 25 25 PHE B 295 TYR B 297 5 3 HELIX 26 26 CYS B 302 LYS B 307 1 6 HELIX 27 27 GLN B 310 LYS B 315 1 6 HELIX 28 28 TYR B 316 ALA B 328 1 13 HELIX 29 29 ASN B 332 LEU B 355 1 24 HELIX 30 30 THR B 356 PHE B 376 1 21 HELIX 31 31 ASP B 383 HIS B 395 1 13 HELIX 32 32 LYS B 400 ASN B 415 1 16 HELIX 33 33 GLY B 431 GLY B 444 1 14 HELIX 34 34 ARG B 456 GLY B 462 1 7 HELIX 35 35 VAL B 463 ILE B 465 5 3 HELIX 36 36 LEU B 497 GLY B 503 1 7 HELIX 37 37 LYS B 512 LEU B 514 5 3 HELIX 38 38 PRO B 534 ALA B 539 1 6 HELIX 39 39 LYS B 550 ARG B 559 1 10 HELIX 40 40 GLU B 561 LYS B 566 1 6 HELIX 41 41 SER B 571 ARG B 583 1 13 HELIX 42 42 PRO B 584 PHE B 588 5 5 HELIX 43 43 ALA B 589 PHE B 607 1 19 HELIX 44 44 SER B 608 GLY B 622 1 15 HELIX 45 45 SER C 269 THR C 280 1 12 HELIX 46 46 ASP C 284 GLU C 294 1 11 HELIX 47 47 PHE C 295 TYR C 297 5 3 HELIX 48 48 CYS C 302 LYS C 307 1 6 HELIX 49 49 GLN C 310 LYS C 315 1 6 HELIX 50 50 TYR C 316 ALA C 328 1 13 HELIX 51 51 ASN C 332 LEU C 355 1 24 HELIX 52 52 THR C 356 PHE C 376 1 21 HELIX 53 53 ASP C 383 CYS C 396 1 14 HELIX 54 54 LYS C 400 ASN C 415 1 16 HELIX 55 55 GLY C 431 GLY C 444 1 14 HELIX 56 56 ARG C 456 GLY C 462 1 7 HELIX 57 57 VAL C 463 ILE C 465 5 3 HELIX 58 58 GLY C 479 ASP C 484 5 6 HELIX 59 59 GLN C 489 ASN C 496 1 8 HELIX 60 60 LEU C 497 GLY C 503 1 7 HELIX 61 61 PRO C 534 ALA C 539 1 6 HELIX 62 62 LYS C 550 ARG C 559 1 10 HELIX 63 63 GLU C 561 LYS C 566 1 6 HELIX 64 64 SER C 571 ARG C 583 1 13 HELIX 65 65 PRO C 584 PHE C 588 5 5 HELIX 66 66 ALA C 589 PHE C 607 1 19 HELIX 67 67 SER C 608 MET C 621 1 14 SHEET 1 A 5 LYS A 446 LEU A 448 0 SHEET 2 A 5 VAL A 470 PHE A 472 1 O VAL A 471 N LEU A 448 SHEET 3 A 5 GLY A 524 MET A 528 1 O ILE A 525 N PHE A 472 SHEET 4 A 5 TYR A 421 LYS A 425 1 N PHE A 424 O VAL A 526 SHEET 5 A 5 LYS A 543 ASP A 546 1 O ILE A 545 N LEU A 423 SHEET 1 B 2 VAL A 507 LEU A 509 0 SHEET 2 B 2 ARG A 517 GLN A 519 -1 O GLN A 519 N VAL A 507 SHEET 1 C 5 LYS B 446 LEU B 448 0 SHEET 2 C 5 VAL B 470 PHE B 472 1 O VAL B 471 N LEU B 448 SHEET 3 C 5 GLY B 524 MET B 528 1 O ILE B 525 N PHE B 472 SHEET 4 C 5 TYR B 421 LYS B 425 1 N PHE B 424 O VAL B 526 SHEET 5 C 5 PHE B 541 ASP B 546 1 O ILE B 545 N LEU B 423 SHEET 1 D 2 VAL B 507 GLU B 510 0 SHEET 2 D 2 LYS B 516 GLN B 519 -1 O GLN B 519 N VAL B 507 SHEET 1 E 5 LYS C 446 LEU C 448 0 SHEET 2 E 5 VAL C 470 PHE C 472 1 O VAL C 471 N LEU C 448 SHEET 3 E 5 GLY C 524 MET C 528 1 O ILE C 525 N PHE C 472 SHEET 4 E 5 TYR C 421 LYS C 425 1 N PHE C 424 O VAL C 526 SHEET 5 E 5 LYS C 543 ASP C 546 1 O ILE C 545 N LEU C 423 SHEET 1 F 2 VAL C 507 LEU C 509 0 SHEET 2 F 2 ARG C 517 GLN C 519 -1 O GLN C 519 N VAL C 507 LINK O HOH A 165 MG MG A 750 1555 1555 2.26 LINK O HOH A 227 MG MG A 750 1555 1555 1.98 LINK O HOH A 229 MG MG A 750 1555 1555 2.20 LINK O HOH A 230 MG MG A 750 1555 1555 2.14 LINK SG CYS A 302 ZN ZN A 700 1555 1555 2.31 LINK SG CYS A 305 ZN ZN A 700 1555 1555 2.24 LINK NE2 HIS A 313 ZN ZN A 700 1555 1555 2.20 LINK ND1 HIS A 317 ZN ZN A 700 1555 1555 1.96 LINK OG1 THR A 433 MG MG A 750 1555 1555 2.31 LINK NH2 ARG A 498 MG MG C 750 2656 1555 3.09 LINK MG MG A 750 O2B ADP A 800 1555 1555 2.04 LINK O HOH B 222 MG MG B 750 1555 1555 2.04 LINK O HOH B 223 MG MG B 750 1555 1555 2.41 LINK O HOH B 224 MG MG B 750 1555 1555 2.05 LINK SG CYS B 302 ZN ZN B 700 1555 1555 2.17 LINK SG CYS B 305 ZN ZN B 700 1555 1555 2.02 LINK NE2 HIS B 313 ZN ZN B 700 1555 1555 2.28 LINK ND1 HIS B 317 ZN ZN B 700 1555 1555 2.18 LINK OG1 THR B 433 MG MG B 750 1555 1555 2.04 LINK MG MG B 750 O2B ADP B 800 1555 1555 2.14 LINK MG MG B 750 O HOH C 125 1555 1555 2.19 LINK O HOH C 48 MG MG C 750 1555 1555 2.42 LINK O HOH C 216 MG MG C 750 1555 1555 2.19 LINK O HOH C 217 MG MG C 750 1555 1555 2.35 LINK O HOH C 218 MG MG C 750 1555 1555 2.13 LINK SG CYS C 302 ZN ZN C 700 1555 1555 1.93 LINK SG CYS C 305 ZN ZN C 700 1555 1555 2.39 LINK NE2 HIS C 313 ZN ZN C 700 1555 1555 2.30 LINK OG1 THR C 433 MG MG C 750 1555 1555 2.13 LINK MG MG C 750 O2B ADP C 800 1555 1555 2.10 SITE 1 AC1 4 CYS A 302 CYS A 305 HIS A 313 HIS A 317 SITE 1 AC2 4 CYS B 302 CYS B 305 HIS B 313 HIS B 317 SITE 1 AC3 4 CYS C 302 CYS C 305 HIS C 313 HIS C 317 SITE 1 AC4 7 HOH A 165 HOH A 227 HOH A 229 HOH A 230 SITE 2 AC4 7 THR A 433 GLU A 473 ADP A 800 SITE 1 AC5 6 HOH B 222 HOH B 223 HOH B 224 THR B 433 SITE 2 AC5 6 ADP B 800 HOH C 125 SITE 1 AC6 7 ARG A 498 HOH C 48 HOH C 216 HOH C 217 SITE 2 AC6 7 HOH C 218 THR C 433 ADP C 800 SITE 1 AC7 17 HOH A 227 HOH A 229 ILE A 428 ASP A 429 SITE 2 AC7 17 SER A 430 GLY A 431 LYS A 432 THR A 433 SITE 3 AC7 17 THR A 434 ARG A 548 PRO A 549 LYS A 550 SITE 4 AC7 17 LEU A 553 LEU A 557 LEU A 564 MG A 750 SITE 5 AC7 17 LYS B 418 SITE 1 AC8 21 HOH B 220 HOH B 222 HOH B 223 HOH B 224 SITE 2 AC8 21 LEU B 397 ILE B 428 ASP B 429 SER B 430 SITE 3 AC8 21 GLY B 431 LYS B 432 THR B 433 THR B 434 SITE 4 AC8 21 ARG B 548 PRO B 549 LYS B 550 LEU B 553 SITE 5 AC8 21 LEU B 557 LEU B 564 MG B 750 LYS C 418 SITE 6 AC8 21 ARG C 498 SITE 1 AC9 22 LYS A 418 ARG A 498 HOH C 33 HOH C 54 SITE 2 AC9 22 HOH C 216 HOH C 217 HOH C 218 LEU C 397 SITE 3 AC9 22 PRO C 427 ILE C 428 ASP C 429 SER C 430 SITE 4 AC9 22 GLY C 431 LYS C 432 THR C 433 THR C 434 SITE 5 AC9 22 ARG C 548 PRO C 549 LYS C 550 LEU C 553 SITE 6 AC9 22 LEU C 557 MG C 750 CRYST1 195.812 86.442 128.601 90.00 129.00 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005107 0.000000 0.004136 0.00000 SCALE2 0.000000 0.011568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010006 0.00000