HEADER HYDROLASE 30-MAR-04 1SVW TITLE CRYSTAL STRUCTURE OF YSXC COMPLEXED WITH GMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN YSXC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YSXC, ENGB, BSU28190; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YSXC, GTPASE, GTP-BINDING PROTEIN, GMPPNP, GTP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.N.RUZHEINIKOV,S.K.DAS,S.E.SEDELNIKOVA,P.J.BAKER,P.J.ARTYMIUK, AUTHOR 2 J.GARCIA-LARA,S.J.FOSTER,D.W.RICE REVDAT 4 14-FEB-24 1SVW 1 REMARK LINK REVDAT 3 11-OCT-17 1SVW 1 REMARK REVDAT 2 24-FEB-09 1SVW 1 VERSN REVDAT 1 25-MAY-04 1SVW 0 JRNL AUTH S.N.RUZHEINIKOV,S.K.DAS,S.E.SEDELNIKOVA,P.J.BAKER, JRNL AUTH 2 P.J.ARTYMIUK,J.GARCIA-LARA,S.J.FOSTER,D.W.RICE JRNL TITL ANALYSIS OF THE OPEN AND CLOSED CONFORMATIONS OF THE JRNL TITL 2 GTP-BINDING PROTEIN YSXC FROM BACILLUS SUBTILIS. JRNL REF J.MOL.BIOL. V. 339 265 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15136032 JRNL DOI 10.1016/J.JMB.2004.03.043 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.K.DAS,S.E.SEDELNIKOVA,P.J.BAKER,S.N.RUZHEINIKOV, REMARK 1 AUTH 2 S.J.FOSTER,D.W.RICE REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF A PUTATIVE GTP-BINDING PROTEIN, REMARK 1 TITL 3 YSXC, FROM BACILLUS SUBTILIS. REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.306 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 361 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, ETHYLENE GLYCOL, REMARK 280 GMPPNP, MGCL2, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.29950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 VAL A 84 REMARK 465 SER A 85 REMARK 465 LYS A 86 REMARK 465 ALA B 82 REMARK 465 LYS B 83 REMARK 465 VAL B 84 REMARK 465 SER B 85 REMARK 465 LYS B 86 REMARK 465 SER B 87 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 128 NH1 ARG B 46 2647 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 90.48 -65.95 REMARK 500 VAL A 9 -50.71 -137.32 REMARK 500 GLU A 16 26.85 -72.30 REMARK 500 GLN A 17 -25.52 -149.47 REMARK 500 ASN A 33 -14.05 90.67 REMARK 500 SER A 54 -53.49 -16.96 REMARK 500 LYS A 55 50.98 166.70 REMARK 500 PRO A 56 -119.85 -115.42 REMARK 500 ASP A 69 11.80 54.16 REMARK 500 TYR A 79 117.85 -38.36 REMARK 500 PHE A 81 -73.03 -65.87 REMARK 500 ALA A 82 36.00 -95.41 REMARK 500 ARG A 89 -75.33 -63.90 REMARK 500 GLU A 97 -72.85 -58.14 REMARK 500 THR A 98 -64.09 -28.63 REMARK 500 ILE A 100 35.02 -63.69 REMARK 500 THR A 101 0.15 -164.39 REMARK 500 THR A 102 -6.12 -140.69 REMARK 500 LEU A 106 106.33 -41.93 REMARK 500 ALA A 108 154.46 149.14 REMARK 500 GLN A 125 -73.36 -41.99 REMARK 500 ASP A 145 -5.62 -43.61 REMARK 500 PRO A 148 106.10 -41.39 REMARK 500 LYS A 149 -40.91 -27.02 REMARK 500 ASN A 164 68.65 30.28 REMARK 500 GLU A 177 -72.88 -83.45 REMARK 500 LYS A 182 -91.19 -42.10 REMARK 500 THR B 4 -14.49 -147.79 REMARK 500 GLU B 7 140.05 168.02 REMARK 500 ILE B 8 -176.46 -69.49 REMARK 500 VAL B 9 -78.66 -133.95 REMARK 500 VAL B 13 -59.48 -120.42 REMARK 500 GLU B 16 7.46 -49.18 REMARK 500 GLU B 20 -86.96 -104.02 REMARK 500 LEU B 23 156.82 -45.61 REMARK 500 ASN B 48 24.06 163.57 REMARK 500 ALA B 50 60.88 -105.12 REMARK 500 ARG B 51 98.73 -6.20 REMARK 500 SER B 53 -161.84 -168.08 REMARK 500 LYS B 55 -27.16 91.79 REMARK 500 PRO B 56 -116.80 -75.04 REMARK 500 ASP B 69 45.59 25.87 REMARK 500 GLU B 70 -63.66 -121.71 REMARK 500 PRO B 77 -161.32 -60.27 REMARK 500 TYR B 79 106.88 -33.01 REMARK 500 ALA B 91 -100.22 -58.75 REMARK 500 TRP B 92 -71.99 8.28 REMARK 500 THR B 102 26.17 -153.55 REMARK 500 LEU B 106 101.92 -44.61 REMARK 500 ALA B 108 141.33 173.02 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 99 0.08 SIDE CHAIN REMARK 500 TYR B 18 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 300 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 37 OG REMARK 620 2 ASP A 75 OD2 57.6 REMARK 620 3 VAL A 76 O 150.9 109.4 REMARK 620 4 GTP A 401 O2B 56.3 105.1 145.4 REMARK 620 5 GTP A 401 O3G 63.9 110.3 103.3 65.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 37 OG REMARK 620 2 THR B 59 OG1 79.6 REMARK 620 3 GTP B 402 O2B 75.0 130.1 REMARK 620 4 GTP B 402 O3G 113.2 67.6 84.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SVL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO-YSXC REMARK 900 RELATED ID: 1SUI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GTP-BINDING PROTEIN YSXC COMPLEXED WITH GDP DBREF 1SVW A 1 195 UNP P38424 ENGB_BACSU 1 195 DBREF 1SVW B 1 195 UNP P38424 ENGB_BACSU 1 195 SEQRES 1 A 195 MET LYS VAL THR LYS SER GLU ILE VAL ILE SER ALA VAL SEQRES 2 A 195 LYS PRO GLU GLN TYR PRO GLU GLY GLY LEU PRO GLU ILE SEQRES 3 A 195 ALA LEU ALA GLY ARG SER ASN VAL GLY LYS SER SER PHE SEQRES 4 A 195 ILE ASN SER LEU ILE ASN ARG LYS ASN LEU ALA ARG THR SEQRES 5 A 195 SER SER LYS PRO GLY LYS THR GLN THR LEU ASN PHE TYR SEQRES 6 A 195 ILE ILE ASN ASP GLU LEU HIS PHE VAL ASP VAL PRO GLY SEQRES 7 A 195 TYR GLY PHE ALA LYS VAL SER LYS SER GLU ARG GLU ALA SEQRES 8 A 195 TRP GLY ARG MET ILE GLU THR TYR ILE THR THR ARG GLU SEQRES 9 A 195 GLU LEU LYS ALA VAL VAL GLN ILE VAL ASP LEU ARG HIS SEQRES 10 A 195 ALA PRO SER ASN ASP ASP VAL GLN MET TYR GLU PHE LEU SEQRES 11 A 195 LYS TYR TYR GLY ILE PRO VAL ILE VAL ILE ALA THR LYS SEQRES 12 A 195 ALA ASP LYS ILE PRO LYS GLY LYS TRP ASP LYS HIS ALA SEQRES 13 A 195 LYS VAL VAL ARG GLN THR LEU ASN ILE ASP PRO GLU ASP SEQRES 14 A 195 GLU LEU ILE LEU PHE SER SER GLU THR LYS LYS GLY LYS SEQRES 15 A 195 ASP GLU ALA TRP GLY ALA ILE LYS LYS MET ILE ASN ARG SEQRES 1 B 195 MET LYS VAL THR LYS SER GLU ILE VAL ILE SER ALA VAL SEQRES 2 B 195 LYS PRO GLU GLN TYR PRO GLU GLY GLY LEU PRO GLU ILE SEQRES 3 B 195 ALA LEU ALA GLY ARG SER ASN VAL GLY LYS SER SER PHE SEQRES 4 B 195 ILE ASN SER LEU ILE ASN ARG LYS ASN LEU ALA ARG THR SEQRES 5 B 195 SER SER LYS PRO GLY LYS THR GLN THR LEU ASN PHE TYR SEQRES 6 B 195 ILE ILE ASN ASP GLU LEU HIS PHE VAL ASP VAL PRO GLY SEQRES 7 B 195 TYR GLY PHE ALA LYS VAL SER LYS SER GLU ARG GLU ALA SEQRES 8 B 195 TRP GLY ARG MET ILE GLU THR TYR ILE THR THR ARG GLU SEQRES 9 B 195 GLU LEU LYS ALA VAL VAL GLN ILE VAL ASP LEU ARG HIS SEQRES 10 B 195 ALA PRO SER ASN ASP ASP VAL GLN MET TYR GLU PHE LEU SEQRES 11 B 195 LYS TYR TYR GLY ILE PRO VAL ILE VAL ILE ALA THR LYS SEQRES 12 B 195 ALA ASP LYS ILE PRO LYS GLY LYS TRP ASP LYS HIS ALA SEQRES 13 B 195 LYS VAL VAL ARG GLN THR LEU ASN ILE ASP PRO GLU ASP SEQRES 14 B 195 GLU LEU ILE LEU PHE SER SER GLU THR LYS LYS GLY LYS SEQRES 15 B 195 ASP GLU ALA TRP GLY ALA ILE LYS LYS MET ILE ASN ARG HET MG A 300 1 HET GTP A 401 32 HET MG B 301 1 HET GTP B 402 32 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GTP 2(C10 H16 N5 O14 P3) HELIX 1 1 GLY A 35 ASN A 45 1 11 HELIX 2 2 SER A 87 ILE A 100 1 14 HELIX 3 3 SER A 120 TYR A 133 1 14 HELIX 4 4 LYS A 143 ILE A 147 5 5 HELIX 5 5 PRO A 148 GLY A 150 5 3 HELIX 6 6 LYS A 151 LEU A 163 1 13 HELIX 7 7 GLY A 181 ASN A 194 1 14 HELIX 8 8 LYS B 14 TYR B 18 5 5 HELIX 9 9 GLY B 35 ILE B 44 1 10 HELIX 10 10 GLU B 88 THR B 101 1 14 HELIX 11 11 SER B 120 GLY B 134 1 15 HELIX 12 12 LYS B 143 ILE B 147 5 5 HELIX 13 13 LYS B 151 LEU B 163 1 13 HELIX 14 14 GLY B 181 ARG B 195 1 15 SHEET 1 A 6 GLU A 7 ALA A 12 0 SHEET 2 A 6 LEU A 62 ILE A 67 -1 O ILE A 66 N GLU A 7 SHEET 3 A 6 LEU A 71 ASP A 75 -1 O ASP A 75 N ASN A 63 SHEET 4 A 6 GLU A 25 GLY A 30 1 N ILE A 26 O HIS A 72 SHEET 5 A 6 LEU A 106 ASP A 114 1 O LYS A 107 N GLU A 25 SHEET 6 A 6 ILE A 140 THR A 142 1 O THR A 142 N VAL A 113 SHEET 1 B 3 SER B 6 GLU B 7 0 SHEET 2 B 3 LEU B 62 ILE B 67 -1 O ILE B 66 N GLU B 7 SHEET 3 B 3 SER B 11 ALA B 12 -1 N ALA B 12 O LEU B 62 SHEET 1 C 6 SER B 6 GLU B 7 0 SHEET 2 C 6 LEU B 62 ILE B 67 -1 O ILE B 66 N GLU B 7 SHEET 3 C 6 LEU B 71 ASP B 75 -1 O LEU B 71 N ILE B 67 SHEET 4 C 6 GLU B 25 GLY B 30 1 N ILE B 26 O HIS B 72 SHEET 5 C 6 LEU B 106 ASP B 114 1 O LYS B 107 N GLU B 25 SHEET 6 C 6 VAL B 139 THR B 142 1 O ILE B 140 N VAL B 113 LINK OG SER A 37 MG MG A 300 1555 1555 2.85 LINK OD2 ASP A 75 MG MG A 300 1555 1555 2.89 LINK O VAL A 76 MG MG A 300 1555 1555 2.84 LINK MG MG A 300 O2B GTP A 401 1555 1555 2.85 LINK MG MG A 300 O3G GTP A 401 1555 1555 2.86 LINK OG SER B 37 MG MG B 301 1555 1555 2.38 LINK OG1 THR B 59 MG MG B 301 1555 1555 2.21 LINK MG MG B 301 O2B GTP B 402 1555 1555 2.05 LINK MG MG B 301 O3G GTP B 402 1555 1555 2.14 SITE 1 AC1 6 LYS A 36 SER A 37 THR A 59 ASP A 75 SITE 2 AC1 6 VAL A 76 GTP A 401 SITE 1 AC2 5 LYS B 36 SER B 37 THR B 59 ASP B 75 SITE 2 AC2 5 GTP B 402 SITE 1 AC3 18 ASN A 33 VAL A 34 GLY A 35 LYS A 36 SITE 2 AC3 18 SER A 37 SER A 38 THR A 52 SER A 53 SITE 3 AC3 18 SER A 54 GLY A 57 LYS A 58 THR A 59 SITE 4 AC3 18 GLY A 78 LYS A 143 ASP A 145 LYS A 146 SITE 5 AC3 18 SER A 176 MG A 300 SITE 1 AC4 20 SER B 32 ASN B 33 VAL B 34 GLY B 35 SITE 2 AC4 20 LYS B 36 SER B 37 SER B 38 THR B 52 SITE 3 AC4 20 SER B 53 SER B 54 GLY B 57 LYS B 58 SITE 4 AC4 20 THR B 59 GLY B 78 THR B 142 LYS B 143 SITE 5 AC4 20 ASP B 145 SER B 175 SER B 176 MG B 301 CRYST1 43.586 70.599 72.583 90.00 102.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022943 0.000000 0.004986 0.00000 SCALE2 0.000000 0.014165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014099 0.00000