data_1SX6
#
_entry.id 1SX6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.376
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1SX6 pdb_00001sx6 10.2210/pdb1sx6/pdb
RCSB RCSB022061 ? ?
WWPDB D_1000022061 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 1SWX
_pdbx_database_related.details 'The same protein in apo-form'
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1SX6
_pdbx_database_status.recvd_initial_deposition_date 2004-03-30
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Malinina, L.' 1
'Malakhova, M.L.' 2
'Teplov, A.' 3
'Brown, R.E.' 4
'Patel, D.J.' 5
#
_citation.id primary
_citation.title 'Structural basis for glycosphingolipid transfer specificity.'
_citation.journal_abbrev Nature
_citation.journal_volume 430
_citation.page_first 1048
_citation.page_last 1053
_citation.year 2004
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 15329726
_citation.pdbx_database_id_DOI 10.1038/nature02856
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Malinina, L.' 1 ?
primary 'Malakhova, M.L.' 2 ?
primary 'Teplov, A.' 3 ?
primary 'Brown, R.E.' 4 ?
primary 'Patel, D.J.' 5 ?
#
_cell.entry_id 1SX6
_cell.length_a 75.599
_cell.length_b 49.073
_cell.length_c 68.538
_cell.angle_alpha 90.00
_cell.angle_beta 122.52
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1SX6
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Glycolipid transfer protein' 23877.777 1 ? ? ? ?
2 branched man 'beta-D-galactopyranose-(1-4)-beta-D-glucopyranose' 342.297 1 ? ? ? ?
3 non-polymer syn SPHINGOSINE 299.492 1 ? ? ? ?
4 non-polymer syn 'OLEIC ACID' 282.461 1 ? ? ? ?
5 non-polymer syn N-OCTANE 114.229 1 ? ? ? ?
6 water nat water 18.015 160 ? ? ? ?
#
loop_
_entity_name_com.entity_id
_entity_name_com.name
1 GLTP
2 beta-lactose
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEM
YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSD
FLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV
;
_entity_poly.pdbx_seq_one_letter_code_can
;MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEM
YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSD
FLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 ALA n
1 3 LEU n
1 4 LEU n
1 5 ALA n
1 6 GLU n
1 7 HIS n
1 8 LEU n
1 9 LEU n
1 10 LYS n
1 11 PRO n
1 12 LEU n
1 13 PRO n
1 14 ALA n
1 15 ASP n
1 16 LYS n
1 17 GLN n
1 18 ILE n
1 19 GLU n
1 20 THR n
1 21 GLY n
1 22 PRO n
1 23 PHE n
1 24 LEU n
1 25 GLU n
1 26 ALA n
1 27 VAL n
1 28 SER n
1 29 HIS n
1 30 LEU n
1 31 PRO n
1 32 PRO n
1 33 PHE n
1 34 PHE n
1 35 ASP n
1 36 CYS n
1 37 LEU n
1 38 GLY n
1 39 SER n
1 40 PRO n
1 41 VAL n
1 42 PHE n
1 43 THR n
1 44 PRO n
1 45 ILE n
1 46 LYS n
1 47 ALA n
1 48 ASP n
1 49 ILE n
1 50 SER n
1 51 GLY n
1 52 ASN n
1 53 ILE n
1 54 THR n
1 55 LYS n
1 56 ILE n
1 57 LYS n
1 58 ALA n
1 59 VAL n
1 60 TYR n
1 61 ASP n
1 62 THR n
1 63 ASN n
1 64 PRO n
1 65 ALA n
1 66 LYS n
1 67 PHE n
1 68 ARG n
1 69 THR n
1 70 LEU n
1 71 GLN n
1 72 ASN n
1 73 ILE n
1 74 LEU n
1 75 GLU n
1 76 VAL n
1 77 GLU n
1 78 LYS n
1 79 GLU n
1 80 MET n
1 81 TYR n
1 82 GLY n
1 83 ALA n
1 84 GLU n
1 85 TRP n
1 86 PRO n
1 87 LYS n
1 88 VAL n
1 89 GLY n
1 90 ALA n
1 91 THR n
1 92 LEU n
1 93 ALA n
1 94 LEU n
1 95 MET n
1 96 TRP n
1 97 LEU n
1 98 LYS n
1 99 ARG n
1 100 GLY n
1 101 LEU n
1 102 ARG n
1 103 PHE n
1 104 ILE n
1 105 GLN n
1 106 VAL n
1 107 PHE n
1 108 LEU n
1 109 GLN n
1 110 SER n
1 111 ILE n
1 112 CYS n
1 113 ASP n
1 114 GLY n
1 115 GLU n
1 116 ARG n
1 117 ASP n
1 118 GLU n
1 119 ASN n
1 120 HIS n
1 121 PRO n
1 122 ASN n
1 123 LEU n
1 124 ILE n
1 125 ARG n
1 126 VAL n
1 127 ASN n
1 128 ALA n
1 129 THR n
1 130 LYS n
1 131 ALA n
1 132 TYR n
1 133 GLU n
1 134 MET n
1 135 ALA n
1 136 LEU n
1 137 LYS n
1 138 LYS n
1 139 TYR n
1 140 HIS n
1 141 GLY n
1 142 TRP n
1 143 ILE n
1 144 VAL n
1 145 GLN n
1 146 LYS n
1 147 ILE n
1 148 PHE n
1 149 GLN n
1 150 ALA n
1 151 ALA n
1 152 LEU n
1 153 TYR n
1 154 ALA n
1 155 ALA n
1 156 PRO n
1 157 TYR n
1 158 LYS n
1 159 SER n
1 160 ASP n
1 161 PHE n
1 162 LEU n
1 163 LYS n
1 164 ALA n
1 165 LEU n
1 166 SER n
1 167 LYS n
1 168 GLY n
1 169 GLN n
1 170 ASN n
1 171 VAL n
1 172 THR n
1 173 GLU n
1 174 GLU n
1 175 GLU n
1 176 CYS n
1 177 LEU n
1 178 GLU n
1 179 LYS n
1 180 ILE n
1 181 ARG n
1 182 LEU n
1 183 PHE n
1 184 LEU n
1 185 VAL n
1 186 ASN n
1 187 TYR n
1 188 THR n
1 189 ALA n
1 190 THR n
1 191 ILE n
1 192 ASP n
1 193 VAL n
1 194 ILE n
1 195 TYR n
1 196 GLU n
1 197 MET n
1 198 TYR n
1 199 THR n
1 200 GLN n
1 201 MET n
1 202 ASN n
1 203 ALA n
1 204 GLU n
1 205 LEU n
1 206 ASN n
1 207 TYR n
1 208 LYS n
1 209 VAL n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus Homo
_entity_src_gen.pdbx_gene_src_gene GLTP
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus Escherichia
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code GLTP_HUMAN
_struct_ref.pdbx_db_accession Q9NZD2
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEM
YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSD
FLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV
;
_struct_ref.pdbx_align_begin 0
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1SX6
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 209
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q9NZD2
_struct_ref_seq.db_align_beg 0
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 208
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 209
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
OCT non-polymer . N-OCTANE ? 'C8 H18' 114.229
OLA non-polymer . 'OLEIC ACID' ? 'C18 H34 O2' 282.461
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
SPH non-polymer . SPHINGOSINE ? 'C18 H37 N O2' 299.492
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.entry_id 1SX6
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 45.18
_exptl_crystal.description ?
_exptl_crystal.density_Matthews 2.24
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.5
_exptl_crystal_grow.pdbx_details 'PEG 8000, potassium phosphate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS HTC'
_diffrn_detector.pdbx_collection_date 2003-12-19
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RUH3R'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 1SX6
_reflns.observed_criterion_sigma_F 0
_reflns.observed_criterion_sigma_I 0
_reflns.d_resolution_high 1.9
_reflns.d_resolution_low 100.
_reflns.number_all 16853
_reflns.number_obs 16786
_reflns.percent_possible_obs 99.6
_reflns.pdbx_Rmerge_I_obs 0.117
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 15.
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 4.33
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.9
_reflns_shell.d_res_low 1.97
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_obs 0.49
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 1.7
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 1672
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 1SX6
_refine.ls_number_reflns_obs 14761
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I 0.
_refine.pdbx_ls_sigma_F 0.
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 20.00
_refine.ls_d_res_high 1.95
_refine.ls_percent_reflns_obs 99.78
_refine.ls_R_factor_obs 0.19479
_refine.ls_R_factor_all 0.1947
_refine.ls_R_factor_R_work 0.19202
_refine.ls_R_factor_R_free 0.24429
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.0
_refine.ls_number_reflns_R_free 785
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.966
_refine.correlation_coeff_Fo_to_Fc_free 0.949
_refine.B_iso_mean 38.691
_refine.aniso_B[1][1] -2.33
_refine.aniso_B[2][2] 1.27
_refine.aniso_B[3][3] 0.81
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] -0.23
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model 'PDB ENTRY 1SWX'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.194
_refine.pdbx_overall_ESU_R_Free 0.173
_refine.overall_SU_ML 0.158
_refine.overall_SU_B 6.124
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1645
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 70
_refine_hist.number_atoms_solvent 160
_refine_hist.number_atoms_total 1875
_refine_hist.d_res_high 1.95
_refine_hist.d_res_low 20.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.011 0.022 ? 1758 'X-RAY DIFFRACTION' ?
r_bond_other_d 0.002 0.020 ? 1650 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.240 1.998 ? 2365 'X-RAY DIFFRACTION' ?
r_angle_other_deg 0.845 3.000 ? 3850 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5.398 5.000 ? 203 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.071 0.200 ? 267 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.004 0.020 ? 1839 'X-RAY DIFFRACTION' ?
r_gen_planes_other 0.002 0.020 ? 335 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.198 0.200 ? 429 'X-RAY DIFFRACTION' ?
r_nbd_other 0.218 0.200 ? 1922 'X-RAY DIFFRACTION' ?
r_nbtor_other 0.088 0.200 ? 949 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.177 0.200 ? 109 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.263 0.200 ? 4 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other 0.138 0.200 ? 25 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.376 0.200 ? 4 'X-RAY DIFFRACTION' ?
r_mcbond_it 0.701 1.500 ? 1027 'X-RAY DIFFRACTION' ?
r_mcangle_it 1.316 2.000 ? 1659 'X-RAY DIFFRACTION' ?
r_scbond_it 1.821 3.000 ? 730 'X-RAY DIFFRACTION' ?
r_scangle_it 3.135 4.500 ? 706 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.950
_refine_ls_shell.d_res_low 2.000
_refine_ls_shell.number_reflns_R_work 1070
_refine_ls_shell.R_factor_R_work 0.372
_refine_ls_shell.percent_reflns_obs ?
_refine_ls_shell.R_factor_R_free 0.465
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 51
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.R_factor_all ?
#
_struct.entry_id 1SX6
_struct.title 'Crystal structure of human Glycolipid Transfer protein in lactosylceramide-bound form'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1SX6
_struct_keywords.pdbx_keywords 'LIPID TRANSPORT'
_struct_keywords.text 'glycosphingolipid transfer protein-lactosylceramide complex, LIPID TRANSPORT'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
F N N 6 ?
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 GLU A 19 ? SER A 28 ? GLU A 19 SER A 28 1 ? 10
HELX_P HELX_P2 2 HIS A 29 ? LEU A 37 ? HIS A 29 LEU A 37 5 ? 9
HELX_P HELX_P3 3 SER A 39 ? VAL A 41 ? SER A 39 VAL A 41 5 ? 3
HELX_P HELX_P4 4 PHE A 42 ? ASN A 63 ? PHE A 42 ASN A 63 1 ? 22
HELX_P HELX_P5 5 THR A 69 ? GLY A 82 ? THR A 69 GLY A 82 1 ? 14
HELX_P HELX_P6 6 ALA A 83 ? TRP A 85 ? ALA A 83 TRP A 85 5 ? 3
HELX_P HELX_P7 7 VAL A 88 ? ASP A 113 ? VAL A 88 ASP A 113 1 ? 26
HELX_P HELX_P8 8 ILE A 124 ? LEU A 136 ? ILE A 124 LEU A 136 1 ? 13
HELX_P HELX_P9 9 LYS A 137 ? HIS A 140 ? LYS A 137 HIS A 140 5 ? 4
HELX_P HELX_P10 10 GLY A 141 ? LEU A 152 ? GLY A 141 LEU A 152 1 ? 12
HELX_P HELX_P11 11 TYR A 153 ? ALA A 155 ? TYR A 153 ALA A 155 5 ? 3
HELX_P HELX_P12 12 TYR A 157 ? SER A 166 ? TYR A 157 SER A 166 1 ? 10
HELX_P HELX_P13 13 THR A 172 ? MET A 201 ? THR A 172 MET A 201 1 ? 30
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale none ? C SPH . N2 ? ? ? 1_555 D OLA . C1 ? ? A SPH 301 A OLA 302 1_555 ? ? ? ? ? ? ? 1.275 ? ?
covale2 covale one ? C SPH . C1 ? ? ? 1_555 B BGC . O1 ? ? A SPH 301 B BGC 1 1_555 ? ? ? ? ? ? ? 1.347 ? ?
covale3 covale both ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.406 sing ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id TRP
_struct_mon_prot_cis.label_seq_id 85
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id TRP
_struct_mon_prot_cis.auth_seq_id 85
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 86
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 86
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle 6.62
#
_database_PDB_matrix.entry_id 1SX6
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 1SX6
_atom_sites.fract_transf_matrix[1][1] 0.013228
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.008434
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.020378
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.017304
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_database_PDB_caveat.id
_database_PDB_caveat.text
1 'BGC B 1 HAS WRONG CHIRALITY AT ATOM C1'
2 'SPH A 301 HAS WRONG CHIRALITY AT ATOM C2'
3 'SPH A 301 HAS WRONG CHIRALITY AT ATOM C3'
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 1 ? ? ? A . n
A 1 2 ALA 2 2 ? ? ? A . n
A 1 3 LEU 3 3 ? ? ? A . n
A 1 4 LEU 4 4 4 LEU LEU A . n
A 1 5 ALA 5 5 5 ALA ALA A . n
A 1 6 GLU 6 6 6 GLU GLU A . n
A 1 7 HIS 7 7 7 HIS HIS A . n
A 1 8 LEU 8 8 8 LEU LEU A . n
A 1 9 LEU 9 9 9 LEU LEU A . n
A 1 10 LYS 10 10 10 LYS LYS A . n
A 1 11 PRO 11 11 11 PRO PRO A . n
A 1 12 LEU 12 12 12 LEU LEU A . n
A 1 13 PRO 13 13 13 PRO PRO A . n
A 1 14 ALA 14 14 14 ALA ALA A . n
A 1 15 ASP 15 15 15 ASP ASP A . n
A 1 16 LYS 16 16 16 LYS LYS A . n
A 1 17 GLN 17 17 17 GLN GLN A . n
A 1 18 ILE 18 18 18 ILE ILE A . n
A 1 19 GLU 19 19 19 GLU GLU A . n
A 1 20 THR 20 20 20 THR THR A . n
A 1 21 GLY 21 21 21 GLY GLY A . n
A 1 22 PRO 22 22 22 PRO PRO A . n
A 1 23 PHE 23 23 23 PHE PHE A . n
A 1 24 LEU 24 24 24 LEU LEU A . n
A 1 25 GLU 25 25 25 GLU GLU A . n
A 1 26 ALA 26 26 26 ALA ALA A . n
A 1 27 VAL 27 27 27 VAL VAL A . n
A 1 28 SER 28 28 28 SER SER A . n
A 1 29 HIS 29 29 29 HIS HIS A . n
A 1 30 LEU 30 30 30 LEU LEU A . n
A 1 31 PRO 31 31 31 PRO PRO A . n
A 1 32 PRO 32 32 32 PRO PRO A . n
A 1 33 PHE 33 33 33 PHE PHE A . n
A 1 34 PHE 34 34 34 PHE PHE A . n
A 1 35 ASP 35 35 35 ASP ASP A . n
A 1 36 CYS 36 36 36 CYS CYS A . n
A 1 37 LEU 37 37 37 LEU LEU A . n
A 1 38 GLY 38 38 38 GLY GLY A . n
A 1 39 SER 39 39 39 SER SER A . n
A 1 40 PRO 40 40 40 PRO PRO A . n
A 1 41 VAL 41 41 41 VAL VAL A . n
A 1 42 PHE 42 42 42 PHE PHE A . n
A 1 43 THR 43 43 43 THR THR A . n
A 1 44 PRO 44 44 44 PRO PRO A . n
A 1 45 ILE 45 45 45 ILE ILE A . n
A 1 46 LYS 46 46 46 LYS LYS A . n
A 1 47 ALA 47 47 47 ALA ALA A . n
A 1 48 ASP 48 48 48 ASP ASP A . n
A 1 49 ILE 49 49 49 ILE ILE A . n
A 1 50 SER 50 50 50 SER SER A . n
A 1 51 GLY 51 51 51 GLY GLY A . n
A 1 52 ASN 52 52 52 ASN ASN A . n
A 1 53 ILE 53 53 53 ILE ILE A . n
A 1 54 THR 54 54 54 THR THR A . n
A 1 55 LYS 55 55 55 LYS LYS A . n
A 1 56 ILE 56 56 56 ILE ILE A . n
A 1 57 LYS 57 57 57 LYS LYS A . n
A 1 58 ALA 58 58 58 ALA ALA A . n
A 1 59 VAL 59 59 59 VAL VAL A . n
A 1 60 TYR 60 60 60 TYR TYR A . n
A 1 61 ASP 61 61 61 ASP ASP A . n
A 1 62 THR 62 62 62 THR THR A . n
A 1 63 ASN 63 63 63 ASN ASN A . n
A 1 64 PRO 64 64 64 PRO PRO A . n
A 1 65 ALA 65 65 65 ALA ALA A . n
A 1 66 LYS 66 66 66 LYS LYS A . n
A 1 67 PHE 67 67 67 PHE PHE A . n
A 1 68 ARG 68 68 68 ARG ARG A . n
A 1 69 THR 69 69 69 THR THR A . n
A 1 70 LEU 70 70 70 LEU LEU A . n
A 1 71 GLN 71 71 71 GLN GLN A . n
A 1 72 ASN 72 72 72 ASN ASN A . n
A 1 73 ILE 73 73 73 ILE ILE A . n
A 1 74 LEU 74 74 74 LEU LEU A . n
A 1 75 GLU 75 75 75 GLU GLU A . n
A 1 76 VAL 76 76 76 VAL VAL A . n
A 1 77 GLU 77 77 77 GLU GLU A . n
A 1 78 LYS 78 78 78 LYS LYS A . n
A 1 79 GLU 79 79 79 GLU GLU A . n
A 1 80 MET 80 80 80 MET MET A . n
A 1 81 TYR 81 81 81 TYR TYR A . n
A 1 82 GLY 82 82 82 GLY GLY A . n
A 1 83 ALA 83 83 83 ALA ALA A . n
A 1 84 GLU 84 84 84 GLU GLU A . n
A 1 85 TRP 85 85 85 TRP TRP A . n
A 1 86 PRO 86 86 86 PRO PRO A . n
A 1 87 LYS 87 87 87 LYS LYS A . n
A 1 88 VAL 88 88 88 VAL VAL A . n
A 1 89 GLY 89 89 89 GLY GLY A . n
A 1 90 ALA 90 90 90 ALA ALA A . n
A 1 91 THR 91 91 91 THR THR A . n
A 1 92 LEU 92 92 92 LEU LEU A . n
A 1 93 ALA 93 93 93 ALA ALA A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 MET 95 95 95 MET MET A . n
A 1 96 TRP 96 96 96 TRP TRP A . n
A 1 97 LEU 97 97 97 LEU LEU A . n
A 1 98 LYS 98 98 98 LYS LYS A . n
A 1 99 ARG 99 99 99 ARG ARG A . n
A 1 100 GLY 100 100 100 GLY GLY A . n
A 1 101 LEU 101 101 101 LEU LEU A . n
A 1 102 ARG 102 102 102 ARG ARG A . n
A 1 103 PHE 103 103 103 PHE PHE A . n
A 1 104 ILE 104 104 104 ILE ILE A . n
A 1 105 GLN 105 105 105 GLN GLN A . n
A 1 106 VAL 106 106 106 VAL VAL A . n
A 1 107 PHE 107 107 107 PHE PHE A . n
A 1 108 LEU 108 108 108 LEU LEU A . n
A 1 109 GLN 109 109 109 GLN GLN A . n
A 1 110 SER 110 110 110 SER SER A . n
A 1 111 ILE 111 111 111 ILE ILE A . n
A 1 112 CYS 112 112 112 CYS CYS A . n
A 1 113 ASP 113 113 113 ASP ASP A . n
A 1 114 GLY 114 114 114 GLY GLY A . n
A 1 115 GLU 115 115 115 GLU GLU A . n
A 1 116 ARG 116 116 116 ARG ARG A . n
A 1 117 ASP 117 117 117 ASP ASP A . n
A 1 118 GLU 118 118 118 GLU GLU A . n
A 1 119 ASN 119 119 119 ASN ASN A . n
A 1 120 HIS 120 120 120 HIS HIS A . n
A 1 121 PRO 121 121 121 PRO PRO A . n
A 1 122 ASN 122 122 122 ASN ASN A . n
A 1 123 LEU 123 123 123 LEU LEU A . n
A 1 124 ILE 124 124 124 ILE ILE A . n
A 1 125 ARG 125 125 125 ARG ARG A . n
A 1 126 VAL 126 126 126 VAL VAL A . n
A 1 127 ASN 127 127 127 ASN ASN A . n
A 1 128 ALA 128 128 128 ALA ALA A . n
A 1 129 THR 129 129 129 THR THR A . n
A 1 130 LYS 130 130 130 LYS LYS A . n
A 1 131 ALA 131 131 131 ALA ALA A . n
A 1 132 TYR 132 132 132 TYR TYR A . n
A 1 133 GLU 133 133 133 GLU GLU A . n
A 1 134 MET 134 134 134 MET MET A . n
A 1 135 ALA 135 135 135 ALA ALA A . n
A 1 136 LEU 136 136 136 LEU LEU A . n
A 1 137 LYS 137 137 137 LYS LYS A . n
A 1 138 LYS 138 138 138 LYS LYS A . n
A 1 139 TYR 139 139 139 TYR TYR A . n
A 1 140 HIS 140 140 140 HIS HIS A . n
A 1 141 GLY 141 141 141 GLY GLY A . n
A 1 142 TRP 142 142 142 TRP TRP A . n
A 1 143 ILE 143 143 143 ILE ILE A . n
A 1 144 VAL 144 144 144 VAL VAL A . n
A 1 145 GLN 145 145 145 GLN GLN A . n
A 1 146 LYS 146 146 146 LYS LYS A . n
A 1 147 ILE 147 147 147 ILE ILE A . n
A 1 148 PHE 148 148 148 PHE PHE A . n
A 1 149 GLN 149 149 149 GLN GLN A . n
A 1 150 ALA 150 150 150 ALA ALA A . n
A 1 151 ALA 151 151 151 ALA ALA A . n
A 1 152 LEU 152 152 152 LEU LEU A . n
A 1 153 TYR 153 153 153 TYR TYR A . n
A 1 154 ALA 154 154 154 ALA ALA A . n
A 1 155 ALA 155 155 155 ALA ALA A . n
A 1 156 PRO 156 156 156 PRO PRO A . n
A 1 157 TYR 157 157 157 TYR TYR A . n
A 1 158 LYS 158 158 158 LYS LYS A . n
A 1 159 SER 159 159 159 SER SER A . n
A 1 160 ASP 160 160 160 ASP ASP A . n
A 1 161 PHE 161 161 161 PHE PHE A . n
A 1 162 LEU 162 162 162 LEU LEU A . n
A 1 163 LYS 163 163 163 LYS LYS A . n
A 1 164 ALA 164 164 164 ALA ALA A . n
A 1 165 LEU 165 165 165 LEU LEU A . n
A 1 166 SER 166 166 166 SER SER A . n
A 1 167 LYS 167 167 167 LYS LYS A . n
A 1 168 GLY 168 168 ? ? ? A . n
A 1 169 GLN 169 169 169 GLN GLN A . n
A 1 170 ASN 170 170 170 ASN ASN A . n
A 1 171 VAL 171 171 171 VAL VAL A . n
A 1 172 THR 172 172 172 THR THR A . n
A 1 173 GLU 173 173 173 GLU GLU A . n
A 1 174 GLU 174 174 174 GLU GLU A . n
A 1 175 GLU 175 175 175 GLU GLU A . n
A 1 176 CYS 176 176 176 CYS CYS A . n
A 1 177 LEU 177 177 177 LEU LEU A . n
A 1 178 GLU 178 178 178 GLU GLU A . n
A 1 179 LYS 179 179 179 LYS LYS A . n
A 1 180 ILE 180 180 180 ILE ILE A . n
A 1 181 ARG 181 181 181 ARG ARG A . n
A 1 182 LEU 182 182 182 LEU LEU A . n
A 1 183 PHE 183 183 183 PHE PHE A . n
A 1 184 LEU 184 184 184 LEU LEU A . n
A 1 185 VAL 185 185 185 VAL VAL A . n
A 1 186 ASN 186 186 186 ASN ASN A . n
A 1 187 TYR 187 187 187 TYR TYR A . n
A 1 188 THR 188 188 188 THR THR A . n
A 1 189 ALA 189 189 189 ALA ALA A . n
A 1 190 THR 190 190 190 THR THR A . n
A 1 191 ILE 191 191 191 ILE ILE A . n
A 1 192 ASP 192 192 192 ASP ASP A . n
A 1 193 VAL 193 193 193 VAL VAL A . n
A 1 194 ILE 194 194 194 ILE ILE A . n
A 1 195 TYR 195 195 195 TYR TYR A . n
A 1 196 GLU 196 196 196 GLU GLU A . n
A 1 197 MET 197 197 197 MET MET A . n
A 1 198 TYR 198 198 198 TYR TYR A . n
A 1 199 THR 199 199 199 THR THR A . n
A 1 200 GLN 200 200 200 GLN GLN A . n
A 1 201 MET 201 201 201 MET MET A . n
A 1 202 ASN 202 202 202 ASN ASN A . n
A 1 203 ALA 203 203 203 ALA ALA A . n
A 1 204 GLU 204 204 204 GLU GLU A . n
A 1 205 LEU 205 205 205 LEU LEU A . n
A 1 206 ASN 206 206 206 ASN ASN A . n
A 1 207 TYR 207 207 207 TYR TYR A . n
A 1 208 LYS 208 208 208 LYS LYS A . n
A 1 209 VAL 209 209 209 VAL VAL A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SPH 1 301 301 SPH SPH A .
D 4 OLA 1 302 302 OLA ACL A .
E 5 OCT 1 303 303 OCT LMM A .
F 6 HOH 1 304 1 HOH HOH A .
F 6 HOH 2 305 2 HOH HOH A .
F 6 HOH 3 306 3 HOH HOH A .
F 6 HOH 4 307 4 HOH HOH A .
F 6 HOH 5 308 5 HOH HOH A .
F 6 HOH 6 309 6 HOH HOH A .
F 6 HOH 7 310 7 HOH HOH A .
F 6 HOH 8 311 8 HOH HOH A .
F 6 HOH 9 312 9 HOH HOH A .
F 6 HOH 10 313 10 HOH HOH A .
F 6 HOH 11 314 11 HOH HOH A .
F 6 HOH 12 315 12 HOH HOH A .
F 6 HOH 13 316 13 HOH HOH A .
F 6 HOH 14 317 14 HOH HOH A .
F 6 HOH 15 318 15 HOH HOH A .
F 6 HOH 16 319 16 HOH HOH A .
F 6 HOH 17 320 17 HOH HOH A .
F 6 HOH 18 321 18 HOH HOH A .
F 6 HOH 19 322 19 HOH HOH A .
F 6 HOH 20 323 20 HOH HOH A .
F 6 HOH 21 324 21 HOH HOH A .
F 6 HOH 22 325 22 HOH HOH A .
F 6 HOH 23 326 23 HOH HOH A .
F 6 HOH 24 327 24 HOH HOH A .
F 6 HOH 25 328 25 HOH HOH A .
F 6 HOH 26 329 26 HOH HOH A .
F 6 HOH 27 330 27 HOH HOH A .
F 6 HOH 28 331 28 HOH HOH A .
F 6 HOH 29 332 29 HOH HOH A .
F 6 HOH 30 333 30 HOH HOH A .
F 6 HOH 31 334 31 HOH HOH A .
F 6 HOH 32 335 32 HOH HOH A .
F 6 HOH 33 336 33 HOH HOH A .
F 6 HOH 34 337 34 HOH HOH A .
F 6 HOH 35 338 35 HOH HOH A .
F 6 HOH 36 339 36 HOH HOH A .
F 6 HOH 37 340 37 HOH HOH A .
F 6 HOH 38 341 38 HOH HOH A .
F 6 HOH 39 342 39 HOH HOH A .
F 6 HOH 40 343 40 HOH HOH A .
F 6 HOH 41 344 41 HOH HOH A .
F 6 HOH 42 345 42 HOH HOH A .
F 6 HOH 43 346 43 HOH HOH A .
F 6 HOH 44 347 44 HOH HOH A .
F 6 HOH 45 348 45 HOH HOH A .
F 6 HOH 46 349 46 HOH HOH A .
F 6 HOH 47 350 47 HOH HOH A .
F 6 HOH 48 351 48 HOH HOH A .
F 6 HOH 49 352 49 HOH HOH A .
F 6 HOH 50 353 50 HOH HOH A .
F 6 HOH 51 354 51 HOH HOH A .
F 6 HOH 52 355 52 HOH HOH A .
F 6 HOH 53 356 53 HOH HOH A .
F 6 HOH 54 357 54 HOH HOH A .
F 6 HOH 55 358 55 HOH HOH A .
F 6 HOH 56 359 56 HOH HOH A .
F 6 HOH 57 360 57 HOH HOH A .
F 6 HOH 58 361 59 HOH HOH A .
F 6 HOH 59 362 61 HOH HOH A .
F 6 HOH 60 363 62 HOH HOH A .
F 6 HOH 61 364 63 HOH HOH A .
F 6 HOH 62 365 64 HOH HOH A .
F 6 HOH 63 366 65 HOH HOH A .
F 6 HOH 64 367 66 HOH HOH A .
F 6 HOH 65 368 67 HOH HOH A .
F 6 HOH 66 369 68 HOH HOH A .
F 6 HOH 67 370 69 HOH HOH A .
F 6 HOH 68 371 70 HOH HOH A .
F 6 HOH 69 372 72 HOH HOH A .
F 6 HOH 70 373 73 HOH HOH A .
F 6 HOH 71 374 74 HOH HOH A .
F 6 HOH 72 375 76 HOH HOH A .
F 6 HOH 73 376 77 HOH HOH A .
F 6 HOH 74 377 78 HOH HOH A .
F 6 HOH 75 378 79 HOH HOH A .
F 6 HOH 76 379 80 HOH HOH A .
F 6 HOH 77 380 81 HOH HOH A .
F 6 HOH 78 381 82 HOH HOH A .
F 6 HOH 79 382 83 HOH HOH A .
F 6 HOH 80 383 84 HOH HOH A .
F 6 HOH 81 384 85 HOH HOH A .
F 6 HOH 82 385 86 HOH HOH A .
F 6 HOH 83 386 87 HOH HOH A .
F 6 HOH 84 387 88 HOH HOH A .
F 6 HOH 85 388 90 HOH HOH A .
F 6 HOH 86 389 91 HOH HOH A .
F 6 HOH 87 390 92 HOH HOH A .
F 6 HOH 88 391 93 HOH HOH A .
F 6 HOH 89 392 94 HOH HOH A .
F 6 HOH 90 393 95 HOH HOH A .
F 6 HOH 91 394 96 HOH HOH A .
F 6 HOH 92 395 98 HOH HOH A .
F 6 HOH 93 396 101 HOH HOH A .
F 6 HOH 94 397 102 HOH HOH A .
F 6 HOH 95 398 103 HOH HOH A .
F 6 HOH 96 399 105 HOH HOH A .
F 6 HOH 97 400 106 HOH HOH A .
F 6 HOH 98 401 107 HOH HOH A .
F 6 HOH 99 402 108 HOH HOH A .
F 6 HOH 100 403 109 HOH HOH A .
F 6 HOH 101 404 110 HOH HOH A .
F 6 HOH 102 405 111 HOH HOH A .
F 6 HOH 103 406 112 HOH HOH A .
F 6 HOH 104 407 113 HOH HOH A .
F 6 HOH 105 408 115 HOH HOH A .
F 6 HOH 106 409 116 HOH HOH A .
F 6 HOH 107 410 117 HOH HOH A .
F 6 HOH 108 411 118 HOH HOH A .
F 6 HOH 109 412 119 HOH HOH A .
F 6 HOH 110 413 120 HOH HOH A .
F 6 HOH 111 414 121 HOH HOH A .
F 6 HOH 112 415 122 HOH HOH A .
F 6 HOH 113 416 124 HOH HOH A .
F 6 HOH 114 417 125 HOH HOH A .
F 6 HOH 115 418 126 HOH HOH A .
F 6 HOH 116 419 128 HOH HOH A .
F 6 HOH 117 420 129 HOH HOH A .
F 6 HOH 118 421 131 HOH HOH A .
F 6 HOH 119 422 132 HOH HOH A .
F 6 HOH 120 423 133 HOH HOH A .
F 6 HOH 121 424 134 HOH HOH A .
F 6 HOH 122 425 135 HOH HOH A .
F 6 HOH 123 426 136 HOH HOH A .
F 6 HOH 124 427 137 HOH HOH A .
F 6 HOH 125 428 138 HOH HOH A .
F 6 HOH 126 429 140 HOH HOH A .
F 6 HOH 127 430 142 HOH HOH A .
F 6 HOH 128 431 143 HOH HOH A .
F 6 HOH 129 432 144 HOH HOH A .
F 6 HOH 130 433 145 HOH HOH A .
F 6 HOH 131 434 146 HOH HOH A .
F 6 HOH 132 435 148 HOH HOH A .
F 6 HOH 133 436 149 HOH HOH A .
F 6 HOH 134 437 150 HOH HOH A .
F 6 HOH 135 438 151 HOH HOH A .
F 6 HOH 136 439 152 HOH HOH A .
F 6 HOH 137 440 153 HOH HOH A .
F 6 HOH 138 441 154 HOH HOH A .
F 6 HOH 139 442 155 HOH HOH A .
F 6 HOH 140 443 157 HOH HOH A .
F 6 HOH 141 444 159 HOH HOH A .
F 6 HOH 142 445 160 HOH HOH A .
F 6 HOH 143 446 162 HOH HOH A .
F 6 HOH 144 447 166 HOH HOH A .
F 6 HOH 145 448 167 HOH HOH A .
F 6 HOH 146 449 168 HOH HOH A .
F 6 HOH 147 450 169 HOH HOH A .
F 6 HOH 148 451 170 HOH HOH A .
F 6 HOH 149 452 171 HOH HOH A .
F 6 HOH 150 453 172 HOH HOH A .
F 6 HOH 151 454 173 HOH HOH A .
F 6 HOH 152 455 174 HOH HOH A .
F 6 HOH 153 456 175 HOH HOH A .
F 6 HOH 154 457 176 HOH HOH A .
F 6 HOH 155 458 177 HOH HOH A .
F 6 HOH 156 459 178 HOH HOH A .
F 6 HOH 157 460 180 HOH HOH A .
F 6 HOH 158 461 181 HOH HOH A .
F 6 HOH 159 462 182 HOH HOH A .
F 6 HOH 160 463 183 HOH HOH A .
#
_pdbx_molecule_features.prd_id PRD_900004
_pdbx_molecule_features.name beta-lactose
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class Nutrient
_pdbx_molecule_features.details oligosaccharide
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_900004
_pdbx_molecule.asym_id B
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 319
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id F
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2004-08-31
2 'Structure model' 1 1 2008-04-30
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 2 0 2020-07-29
5 'Structure model' 2 1 2023-08-23
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Non-polymer description'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' Advisory
5 4 'Structure model' 'Atomic model'
6 4 'Structure model' 'Data collection'
7 4 'Structure model' 'Derived calculations'
8 4 'Structure model' 'Non-polymer description'
9 4 'Structure model' 'Structure summary'
10 5 'Structure model' 'Data collection'
11 5 'Structure model' 'Database references'
12 5 'Structure model' 'Derived calculations'
13 5 'Structure model' 'Refinement description'
14 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' atom_site
2 4 'Structure model' chem_comp
3 4 'Structure model' database_PDB_caveat
4 4 'Structure model' entity
5 4 'Structure model' entity_name_com
6 4 'Structure model' pdbx_branch_scheme
7 4 'Structure model' pdbx_chem_comp_identifier
8 4 'Structure model' pdbx_entity_branch
9 4 'Structure model' pdbx_entity_branch_descriptor
10 4 'Structure model' pdbx_entity_branch_link
11 4 'Structure model' pdbx_entity_branch_list
12 4 'Structure model' pdbx_entity_nonpoly
13 4 'Structure model' pdbx_molecule_features
14 4 'Structure model' pdbx_nonpoly_scheme
15 4 'Structure model' pdbx_validate_chiral
16 4 'Structure model' struct_conn
17 4 'Structure model' struct_site
18 4 'Structure model' struct_site_gen
19 5 'Structure model' chem_comp
20 5 'Structure model' chem_comp_atom
21 5 'Structure model' chem_comp_bond
22 5 'Structure model' database_2
23 5 'Structure model' pdbx_initial_refinement_model
24 5 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_atom_site.B_iso_or_equiv'
2 4 'Structure model' '_atom_site.Cartn_x'
3 4 'Structure model' '_atom_site.Cartn_y'
4 4 'Structure model' '_atom_site.Cartn_z'
5 4 'Structure model' '_atom_site.auth_asym_id'
6 4 'Structure model' '_atom_site.auth_atom_id'
7 4 'Structure model' '_atom_site.auth_comp_id'
8 4 'Structure model' '_atom_site.auth_seq_id'
9 4 'Structure model' '_atom_site.label_atom_id'
10 4 'Structure model' '_atom_site.label_comp_id'
11 4 'Structure model' '_chem_comp.formula'
12 4 'Structure model' '_chem_comp.formula_weight'
13 4 'Structure model' '_chem_comp.id'
14 4 'Structure model' '_chem_comp.mon_nstd_flag'
15 4 'Structure model' '_chem_comp.name'
16 4 'Structure model' '_chem_comp.type'
17 4 'Structure model' '_entity.formula_weight'
18 4 'Structure model' '_entity.pdbx_description'
19 4 'Structure model' '_entity.type'
20 4 'Structure model' '_pdbx_validate_chiral.auth_asym_id'
21 4 'Structure model' '_pdbx_validate_chiral.auth_atom_id'
22 4 'Structure model' '_pdbx_validate_chiral.auth_comp_id'
23 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id'
24 5 'Structure model' '_chem_comp.pdbx_synonyms'
25 5 'Structure model' '_database_2.pdbx_DOI'
26 5 'Structure model' '_database_2.pdbx_database_accession'
27 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
REFMAC refinement 5.1.24 ? 1
CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2
SCALEPACK 'data scaling' . ? 3
AMoRE phasing . ? 4
#
_pdbx_database_remark.id 600
_pdbx_database_remark.text
;heterogen
The residues LAT, SPH and OLA together form
a lactosylceramide. The atom O in SPH and O1
in OLA are lost during the formation of this
ligand.
;
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 ND2
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 ASN
_pdbx_validate_close_contact.auth_seq_id_1 206
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 456
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.10
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 NE A ARG 102 ? ? CZ A ARG 102 ? A NH2 A ARG 102 ? A 124.31 120.30 4.01 0.50 N
2 1 NE A ARG 102 ? ? CZ A ARG 102 ? B NH2 A ARG 102 ? B 124.59 120.30 4.29 0.50 N
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ASN
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 63
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi -161.27
_pdbx_validate_torsion.psi 81.88
#
loop_
_pdbx_validate_chiral.id
_pdbx_validate_chiral.PDB_model_num
_pdbx_validate_chiral.auth_atom_id
_pdbx_validate_chiral.label_alt_id
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_comp_id
_pdbx_validate_chiral.auth_seq_id
_pdbx_validate_chiral.PDB_ins_code
_pdbx_validate_chiral.details
_pdbx_validate_chiral.omega
1 1 C1 ? B BGC 1 ? 'WRONG HAND' .
2 1 C2 ? A SPH 301 ? 'WRONG HAND' .
3 1 C3 ? A SPH 301 ? 'WRONG HAND' .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A LYS 167 ? CG ? A LYS 167 CG
2 1 Y 1 A LYS 167 ? CD ? A LYS 167 CD
3 1 Y 1 A LYS 167 ? CE ? A LYS 167 CE
4 1 Y 1 A LYS 167 ? NZ ? A LYS 167 NZ
5 1 Y 1 A GLN 169 ? CG ? A GLN 169 CG
6 1 Y 1 A GLN 169 ? CD ? A GLN 169 CD
7 1 Y 1 A GLN 169 ? OE1 ? A GLN 169 OE1
8 1 Y 1 A GLN 169 ? NE2 ? A GLN 169 NE2
9 1 Y 1 A ASN 170 ? CG ? A ASN 170 CG
10 1 Y 1 A ASN 170 ? OD1 ? A ASN 170 OD1
11 1 Y 1 A ASN 170 ? ND2 ? A ASN 170 ND2
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A MET 1 ? A MET 1
2 1 Y 1 A ALA 2 ? A ALA 2
3 1 Y 1 A LEU 3 ? A LEU 3
4 1 Y 1 A GLY 168 ? A GLY 168
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BGC C2 C N R 74
BGC C3 C N S 75
BGC C4 C N S 76
BGC C5 C N R 77
BGC C6 C N N 78
BGC C1 C N R 79
BGC O1 O N N 80
BGC O2 O N N 81
BGC O3 O N N 82
BGC O4 O N N 83
BGC O5 O N N 84
BGC O6 O N N 85
BGC H2 H N N 86
BGC H3 H N N 87
BGC H4 H N N 88
BGC H5 H N N 89
BGC H61 H N N 90
BGC H62 H N N 91
BGC H1 H N N 92
BGC HO1 H N N 93
BGC HO2 H N N 94
BGC HO3 H N N 95
BGC HO4 H N N 96
BGC HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
GAL C1 C N R 112
GAL C2 C N R 113
GAL C3 C N S 114
GAL C4 C N R 115
GAL C5 C N R 116
GAL C6 C N N 117
GAL O1 O N N 118
GAL O2 O N N 119
GAL O3 O N N 120
GAL O4 O N N 121
GAL O5 O N N 122
GAL O6 O N N 123
GAL H1 H N N 124
GAL H2 H N N 125
GAL H3 H N N 126
GAL H4 H N N 127
GAL H5 H N N 128
GAL H61 H N N 129
GAL H62 H N N 130
GAL HO1 H N N 131
GAL HO2 H N N 132
GAL HO3 H N N 133
GAL HO4 H N N 134
GAL HO6 H N N 135
GLN N N N N 136
GLN CA C N S 137
GLN C C N N 138
GLN O O N N 139
GLN CB C N N 140
GLN CG C N N 141
GLN CD C N N 142
GLN OE1 O N N 143
GLN NE2 N N N 144
GLN OXT O N N 145
GLN H H N N 146
GLN H2 H N N 147
GLN HA H N N 148
GLN HB2 H N N 149
GLN HB3 H N N 150
GLN HG2 H N N 151
GLN HG3 H N N 152
GLN HE21 H N N 153
GLN HE22 H N N 154
GLN HXT H N N 155
GLU N N N N 156
GLU CA C N S 157
GLU C C N N 158
GLU O O N N 159
GLU CB C N N 160
GLU CG C N N 161
GLU CD C N N 162
GLU OE1 O N N 163
GLU OE2 O N N 164
GLU OXT O N N 165
GLU H H N N 166
GLU H2 H N N 167
GLU HA H N N 168
GLU HB2 H N N 169
GLU HB3 H N N 170
GLU HG2 H N N 171
GLU HG3 H N N 172
GLU HE2 H N N 173
GLU HXT H N N 174
GLY N N N N 175
GLY CA C N N 176
GLY C C N N 177
GLY O O N N 178
GLY OXT O N N 179
GLY H H N N 180
GLY H2 H N N 181
GLY HA2 H N N 182
GLY HA3 H N N 183
GLY HXT H N N 184
HIS N N N N 185
HIS CA C N S 186
HIS C C N N 187
HIS O O N N 188
HIS CB C N N 189
HIS CG C Y N 190
HIS ND1 N Y N 191
HIS CD2 C Y N 192
HIS CE1 C Y N 193
HIS NE2 N Y N 194
HIS OXT O N N 195
HIS H H N N 196
HIS H2 H N N 197
HIS HA H N N 198
HIS HB2 H N N 199
HIS HB3 H N N 200
HIS HD1 H N N 201
HIS HD2 H N N 202
HIS HE1 H N N 203
HIS HE2 H N N 204
HIS HXT H N N 205
HOH O O N N 206
HOH H1 H N N 207
HOH H2 H N N 208
ILE N N N N 209
ILE CA C N S 210
ILE C C N N 211
ILE O O N N 212
ILE CB C N S 213
ILE CG1 C N N 214
ILE CG2 C N N 215
ILE CD1 C N N 216
ILE OXT O N N 217
ILE H H N N 218
ILE H2 H N N 219
ILE HA H N N 220
ILE HB H N N 221
ILE HG12 H N N 222
ILE HG13 H N N 223
ILE HG21 H N N 224
ILE HG22 H N N 225
ILE HG23 H N N 226
ILE HD11 H N N 227
ILE HD12 H N N 228
ILE HD13 H N N 229
ILE HXT H N N 230
LEU N N N N 231
LEU CA C N S 232
LEU C C N N 233
LEU O O N N 234
LEU CB C N N 235
LEU CG C N N 236
LEU CD1 C N N 237
LEU CD2 C N N 238
LEU OXT O N N 239
LEU H H N N 240
LEU H2 H N N 241
LEU HA H N N 242
LEU HB2 H N N 243
LEU HB3 H N N 244
LEU HG H N N 245
LEU HD11 H N N 246
LEU HD12 H N N 247
LEU HD13 H N N 248
LEU HD21 H N N 249
LEU HD22 H N N 250
LEU HD23 H N N 251
LEU HXT H N N 252
LYS N N N N 253
LYS CA C N S 254
LYS C C N N 255
LYS O O N N 256
LYS CB C N N 257
LYS CG C N N 258
LYS CD C N N 259
LYS CE C N N 260
LYS NZ N N N 261
LYS OXT O N N 262
LYS H H N N 263
LYS H2 H N N 264
LYS HA H N N 265
LYS HB2 H N N 266
LYS HB3 H N N 267
LYS HG2 H N N 268
LYS HG3 H N N 269
LYS HD2 H N N 270
LYS HD3 H N N 271
LYS HE2 H N N 272
LYS HE3 H N N 273
LYS HZ1 H N N 274
LYS HZ2 H N N 275
LYS HZ3 H N N 276
LYS HXT H N N 277
MET N N N N 278
MET CA C N S 279
MET C C N N 280
MET O O N N 281
MET CB C N N 282
MET CG C N N 283
MET SD S N N 284
MET CE C N N 285
MET OXT O N N 286
MET H H N N 287
MET H2 H N N 288
MET HA H N N 289
MET HB2 H N N 290
MET HB3 H N N 291
MET HG2 H N N 292
MET HG3 H N N 293
MET HE1 H N N 294
MET HE2 H N N 295
MET HE3 H N N 296
MET HXT H N N 297
OCT C1 C N N 298
OCT C2 C N N 299
OCT C3 C N N 300
OCT C4 C N N 301
OCT C5 C N N 302
OCT C6 C N N 303
OCT C7 C N N 304
OCT C8 C N N 305
OCT H11 H N N 306
OCT H12 H N N 307
OCT H13 H N N 308
OCT H21 H N N 309
OCT H22 H N N 310
OCT H31 H N N 311
OCT H32 H N N 312
OCT H41 H N N 313
OCT H42 H N N 314
OCT H51 H N N 315
OCT H52 H N N 316
OCT H61 H N N 317
OCT H62 H N N 318
OCT H71 H N N 319
OCT H72 H N N 320
OCT H81 H N N 321
OCT H82 H N N 322
OCT H83 H N N 323
OLA C1 C N N 324
OLA O1 O N N 325
OLA O2 O N N 326
OLA C2 C N N 327
OLA C3 C N N 328
OLA C4 C N N 329
OLA C5 C N N 330
OLA C6 C N N 331
OLA C7 C N N 332
OLA C8 C N N 333
OLA C9 C N N 334
OLA C10 C N N 335
OLA C11 C N N 336
OLA C12 C N N 337
OLA C13 C N N 338
OLA C14 C N N 339
OLA C15 C N N 340
OLA C16 C N N 341
OLA C17 C N N 342
OLA C18 C N N 343
OLA HO2 H N N 344
OLA H21 H N N 345
OLA H22 H N N 346
OLA H31 H N N 347
OLA H32 H N N 348
OLA H41 H N N 349
OLA H42 H N N 350
OLA H51 H N N 351
OLA H52 H N N 352
OLA H61 H N N 353
OLA H62 H N N 354
OLA H71 H N N 355
OLA H72 H N N 356
OLA H81 H N N 357
OLA H82 H N N 358
OLA H9 H N N 359
OLA H10 H N N 360
OLA H111 H N N 361
OLA H112 H N N 362
OLA H121 H N N 363
OLA H122 H N N 364
OLA H131 H N N 365
OLA H132 H N N 366
OLA H141 H N N 367
OLA H142 H N N 368
OLA H151 H N N 369
OLA H152 H N N 370
OLA H161 H N N 371
OLA H162 H N N 372
OLA H171 H N N 373
OLA H172 H N N 374
OLA H181 H N N 375
OLA H182 H N N 376
OLA H183 H N N 377
PHE N N N N 378
PHE CA C N S 379
PHE C C N N 380
PHE O O N N 381
PHE CB C N N 382
PHE CG C Y N 383
PHE CD1 C Y N 384
PHE CD2 C Y N 385
PHE CE1 C Y N 386
PHE CE2 C Y N 387
PHE CZ C Y N 388
PHE OXT O N N 389
PHE H H N N 390
PHE H2 H N N 391
PHE HA H N N 392
PHE HB2 H N N 393
PHE HB3 H N N 394
PHE HD1 H N N 395
PHE HD2 H N N 396
PHE HE1 H N N 397
PHE HE2 H N N 398
PHE HZ H N N 399
PHE HXT H N N 400
PRO N N N N 401
PRO CA C N S 402
PRO C C N N 403
PRO O O N N 404
PRO CB C N N 405
PRO CG C N N 406
PRO CD C N N 407
PRO OXT O N N 408
PRO H H N N 409
PRO HA H N N 410
PRO HB2 H N N 411
PRO HB3 H N N 412
PRO HG2 H N N 413
PRO HG3 H N N 414
PRO HD2 H N N 415
PRO HD3 H N N 416
PRO HXT H N N 417
SER N N N N 418
SER CA C N S 419
SER C C N N 420
SER O O N N 421
SER CB C N N 422
SER OG O N N 423
SER OXT O N N 424
SER H H N N 425
SER H2 H N N 426
SER HA H N N 427
SER HB2 H N N 428
SER HB3 H N N 429
SER HG H N N 430
SER HXT H N N 431
SPH C1 C N N 432
SPH O1 O N N 433
SPH C2 C N R 434
SPH N2 N N N 435
SPH C3 C N S 436
SPH O3 O N N 437
SPH C4 C N N 438
SPH C5 C N N 439
SPH C6 C N N 440
SPH C7 C N N 441
SPH C8 C N N 442
SPH C9 C N N 443
SPH C10 C N N 444
SPH C11 C N N 445
SPH C12 C N N 446
SPH C13 C N N 447
SPH C14 C N N 448
SPH C15 C N N 449
SPH C16 C N N 450
SPH C17 C N N 451
SPH C18 C N N 452
SPH H11 H N N 453
SPH H12 H N N 454
SPH HO1 H N N 455
SPH H2 H N N 456
SPH HN21 H N N 457
SPH HN22 H N N 458
SPH H3 H N N 459
SPH HO3 H N N 460
SPH H4 H N N 461
SPH H5 H N N 462
SPH H61 H N N 463
SPH H62 H N N 464
SPH H71 H N N 465
SPH H72 H N N 466
SPH H81 H N N 467
SPH H82 H N N 468
SPH H91 H N N 469
SPH H92 H N N 470
SPH H101 H N N 471
SPH H102 H N N 472
SPH H111 H N N 473
SPH H112 H N N 474
SPH H121 H N N 475
SPH H122 H N N 476
SPH H131 H N N 477
SPH H132 H N N 478
SPH H141 H N N 479
SPH H142 H N N 480
SPH H151 H N N 481
SPH H152 H N N 482
SPH H161 H N N 483
SPH H162 H N N 484
SPH H171 H N N 485
SPH H172 H N N 486
SPH H181 H N N 487
SPH H182 H N N 488
SPH H183 H N N 489
THR N N N N 490
THR CA C N S 491
THR C C N N 492
THR O O N N 493
THR CB C N R 494
THR OG1 O N N 495
THR CG2 C N N 496
THR OXT O N N 497
THR H H N N 498
THR H2 H N N 499
THR HA H N N 500
THR HB H N N 501
THR HG1 H N N 502
THR HG21 H N N 503
THR HG22 H N N 504
THR HG23 H N N 505
THR HXT H N N 506
TRP N N N N 507
TRP CA C N S 508
TRP C C N N 509
TRP O O N N 510
TRP CB C N N 511
TRP CG C Y N 512
TRP CD1 C Y N 513
TRP CD2 C Y N 514
TRP NE1 N Y N 515
TRP CE2 C Y N 516
TRP CE3 C Y N 517
TRP CZ2 C Y N 518
TRP CZ3 C Y N 519
TRP CH2 C Y N 520
TRP OXT O N N 521
TRP H H N N 522
TRP H2 H N N 523
TRP HA H N N 524
TRP HB2 H N N 525
TRP HB3 H N N 526
TRP HD1 H N N 527
TRP HE1 H N N 528
TRP HE3 H N N 529
TRP HZ2 H N N 530
TRP HZ3 H N N 531
TRP HH2 H N N 532
TRP HXT H N N 533
TYR N N N N 534
TYR CA C N S 535
TYR C C N N 536
TYR O O N N 537
TYR CB C N N 538
TYR CG C Y N 539
TYR CD1 C Y N 540
TYR CD2 C Y N 541
TYR CE1 C Y N 542
TYR CE2 C Y N 543
TYR CZ C Y N 544
TYR OH O N N 545
TYR OXT O N N 546
TYR H H N N 547
TYR H2 H N N 548
TYR HA H N N 549
TYR HB2 H N N 550
TYR HB3 H N N 551
TYR HD1 H N N 552
TYR HD2 H N N 553
TYR HE1 H N N 554
TYR HE2 H N N 555
TYR HH H N N 556
TYR HXT H N N 557
VAL N N N N 558
VAL CA C N S 559
VAL C C N N 560
VAL O O N N 561
VAL CB C N N 562
VAL CG1 C N N 563
VAL CG2 C N N 564
VAL OXT O N N 565
VAL H H N N 566
VAL H2 H N N 567
VAL HA H N N 568
VAL HB H N N 569
VAL HG11 H N N 570
VAL HG12 H N N 571
VAL HG13 H N N 572
VAL HG21 H N N 573
VAL HG22 H N N 574
VAL HG23 H N N 575
VAL HXT H N N 576
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BGC C2 C3 sing N N 70
BGC C2 C1 sing N N 71
BGC C2 O2 sing N N 72
BGC C2 H2 sing N N 73
BGC C3 C4 sing N N 74
BGC C3 O3 sing N N 75
BGC C3 H3 sing N N 76
BGC C4 C5 sing N N 77
BGC C4 O4 sing N N 78
BGC C4 H4 sing N N 79
BGC C5 C6 sing N N 80
BGC C5 O5 sing N N 81
BGC C5 H5 sing N N 82
BGC C6 O6 sing N N 83
BGC C6 H61 sing N N 84
BGC C6 H62 sing N N 85
BGC C1 O1 sing N N 86
BGC C1 O5 sing N N 87
BGC C1 H1 sing N N 88
BGC O1 HO1 sing N N 89
BGC O2 HO2 sing N N 90
BGC O3 HO3 sing N N 91
BGC O4 HO4 sing N N 92
BGC O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
GAL C1 C2 sing N N 107
GAL C1 O1 sing N N 108
GAL C1 O5 sing N N 109
GAL C1 H1 sing N N 110
GAL C2 C3 sing N N 111
GAL C2 O2 sing N N 112
GAL C2 H2 sing N N 113
GAL C3 C4 sing N N 114
GAL C3 O3 sing N N 115
GAL C3 H3 sing N N 116
GAL C4 C5 sing N N 117
GAL C4 O4 sing N N 118
GAL C4 H4 sing N N 119
GAL C5 C6 sing N N 120
GAL C5 O5 sing N N 121
GAL C5 H5 sing N N 122
GAL C6 O6 sing N N 123
GAL C6 H61 sing N N 124
GAL C6 H62 sing N N 125
GAL O1 HO1 sing N N 126
GAL O2 HO2 sing N N 127
GAL O3 HO3 sing N N 128
GAL O4 HO4 sing N N 129
GAL O6 HO6 sing N N 130
GLN N CA sing N N 131
GLN N H sing N N 132
GLN N H2 sing N N 133
GLN CA C sing N N 134
GLN CA CB sing N N 135
GLN CA HA sing N N 136
GLN C O doub N N 137
GLN C OXT sing N N 138
GLN CB CG sing N N 139
GLN CB HB2 sing N N 140
GLN CB HB3 sing N N 141
GLN CG CD sing N N 142
GLN CG HG2 sing N N 143
GLN CG HG3 sing N N 144
GLN CD OE1 doub N N 145
GLN CD NE2 sing N N 146
GLN NE2 HE21 sing N N 147
GLN NE2 HE22 sing N N 148
GLN OXT HXT sing N N 149
GLU N CA sing N N 150
GLU N H sing N N 151
GLU N H2 sing N N 152
GLU CA C sing N N 153
GLU CA CB sing N N 154
GLU CA HA sing N N 155
GLU C O doub N N 156
GLU C OXT sing N N 157
GLU CB CG sing N N 158
GLU CB HB2 sing N N 159
GLU CB HB3 sing N N 160
GLU CG CD sing N N 161
GLU CG HG2 sing N N 162
GLU CG HG3 sing N N 163
GLU CD OE1 doub N N 164
GLU CD OE2 sing N N 165
GLU OE2 HE2 sing N N 166
GLU OXT HXT sing N N 167
GLY N CA sing N N 168
GLY N H sing N N 169
GLY N H2 sing N N 170
GLY CA C sing N N 171
GLY CA HA2 sing N N 172
GLY CA HA3 sing N N 173
GLY C O doub N N 174
GLY C OXT sing N N 175
GLY OXT HXT sing N N 176
HIS N CA sing N N 177
HIS N H sing N N 178
HIS N H2 sing N N 179
HIS CA C sing N N 180
HIS CA CB sing N N 181
HIS CA HA sing N N 182
HIS C O doub N N 183
HIS C OXT sing N N 184
HIS CB CG sing N N 185
HIS CB HB2 sing N N 186
HIS CB HB3 sing N N 187
HIS CG ND1 sing Y N 188
HIS CG CD2 doub Y N 189
HIS ND1 CE1 doub Y N 190
HIS ND1 HD1 sing N N 191
HIS CD2 NE2 sing Y N 192
HIS CD2 HD2 sing N N 193
HIS CE1 NE2 sing Y N 194
HIS CE1 HE1 sing N N 195
HIS NE2 HE2 sing N N 196
HIS OXT HXT sing N N 197
HOH O H1 sing N N 198
HOH O H2 sing N N 199
ILE N CA sing N N 200
ILE N H sing N N 201
ILE N H2 sing N N 202
ILE CA C sing N N 203
ILE CA CB sing N N 204
ILE CA HA sing N N 205
ILE C O doub N N 206
ILE C OXT sing N N 207
ILE CB CG1 sing N N 208
ILE CB CG2 sing N N 209
ILE CB HB sing N N 210
ILE CG1 CD1 sing N N 211
ILE CG1 HG12 sing N N 212
ILE CG1 HG13 sing N N 213
ILE CG2 HG21 sing N N 214
ILE CG2 HG22 sing N N 215
ILE CG2 HG23 sing N N 216
ILE CD1 HD11 sing N N 217
ILE CD1 HD12 sing N N 218
ILE CD1 HD13 sing N N 219
ILE OXT HXT sing N N 220
LEU N CA sing N N 221
LEU N H sing N N 222
LEU N H2 sing N N 223
LEU CA C sing N N 224
LEU CA CB sing N N 225
LEU CA HA sing N N 226
LEU C O doub N N 227
LEU C OXT sing N N 228
LEU CB CG sing N N 229
LEU CB HB2 sing N N 230
LEU CB HB3 sing N N 231
LEU CG CD1 sing N N 232
LEU CG CD2 sing N N 233
LEU CG HG sing N N 234
LEU CD1 HD11 sing N N 235
LEU CD1 HD12 sing N N 236
LEU CD1 HD13 sing N N 237
LEU CD2 HD21 sing N N 238
LEU CD2 HD22 sing N N 239
LEU CD2 HD23 sing N N 240
LEU OXT HXT sing N N 241
LYS N CA sing N N 242
LYS N H sing N N 243
LYS N H2 sing N N 244
LYS CA C sing N N 245
LYS CA CB sing N N 246
LYS CA HA sing N N 247
LYS C O doub N N 248
LYS C OXT sing N N 249
LYS CB CG sing N N 250
LYS CB HB2 sing N N 251
LYS CB HB3 sing N N 252
LYS CG CD sing N N 253
LYS CG HG2 sing N N 254
LYS CG HG3 sing N N 255
LYS CD CE sing N N 256
LYS CD HD2 sing N N 257
LYS CD HD3 sing N N 258
LYS CE NZ sing N N 259
LYS CE HE2 sing N N 260
LYS CE HE3 sing N N 261
LYS NZ HZ1 sing N N 262
LYS NZ HZ2 sing N N 263
LYS NZ HZ3 sing N N 264
LYS OXT HXT sing N N 265
MET N CA sing N N 266
MET N H sing N N 267
MET N H2 sing N N 268
MET CA C sing N N 269
MET CA CB sing N N 270
MET CA HA sing N N 271
MET C O doub N N 272
MET C OXT sing N N 273
MET CB CG sing N N 274
MET CB HB2 sing N N 275
MET CB HB3 sing N N 276
MET CG SD sing N N 277
MET CG HG2 sing N N 278
MET CG HG3 sing N N 279
MET SD CE sing N N 280
MET CE HE1 sing N N 281
MET CE HE2 sing N N 282
MET CE HE3 sing N N 283
MET OXT HXT sing N N 284
OCT C1 C2 sing N N 285
OCT C1 H11 sing N N 286
OCT C1 H12 sing N N 287
OCT C1 H13 sing N N 288
OCT C2 C3 sing N N 289
OCT C2 H21 sing N N 290
OCT C2 H22 sing N N 291
OCT C3 C4 sing N N 292
OCT C3 H31 sing N N 293
OCT C3 H32 sing N N 294
OCT C4 C5 sing N N 295
OCT C4 H41 sing N N 296
OCT C4 H42 sing N N 297
OCT C5 C6 sing N N 298
OCT C5 H51 sing N N 299
OCT C5 H52 sing N N 300
OCT C6 C7 sing N N 301
OCT C6 H61 sing N N 302
OCT C6 H62 sing N N 303
OCT C7 C8 sing N N 304
OCT C7 H71 sing N N 305
OCT C7 H72 sing N N 306
OCT C8 H81 sing N N 307
OCT C8 H82 sing N N 308
OCT C8 H83 sing N N 309
OLA C1 O1 doub N N 310
OLA C1 O2 sing N N 311
OLA C1 C2 sing N N 312
OLA O2 HO2 sing N N 313
OLA C2 C3 sing N N 314
OLA C2 H21 sing N N 315
OLA C2 H22 sing N N 316
OLA C3 C4 sing N N 317
OLA C3 H31 sing N N 318
OLA C3 H32 sing N N 319
OLA C4 C5 sing N N 320
OLA C4 H41 sing N N 321
OLA C4 H42 sing N N 322
OLA C5 C6 sing N N 323
OLA C5 H51 sing N N 324
OLA C5 H52 sing N N 325
OLA C6 C7 sing N N 326
OLA C6 H61 sing N N 327
OLA C6 H62 sing N N 328
OLA C7 C8 sing N N 329
OLA C7 H71 sing N N 330
OLA C7 H72 sing N N 331
OLA C8 C9 sing N N 332
OLA C8 H81 sing N N 333
OLA C8 H82 sing N N 334
OLA C9 C10 doub N Z 335
OLA C9 H9 sing N N 336
OLA C10 C11 sing N N 337
OLA C10 H10 sing N N 338
OLA C11 C12 sing N N 339
OLA C11 H111 sing N N 340
OLA C11 H112 sing N N 341
OLA C12 C13 sing N N 342
OLA C12 H121 sing N N 343
OLA C12 H122 sing N N 344
OLA C13 C14 sing N N 345
OLA C13 H131 sing N N 346
OLA C13 H132 sing N N 347
OLA C14 C15 sing N N 348
OLA C14 H141 sing N N 349
OLA C14 H142 sing N N 350
OLA C15 C16 sing N N 351
OLA C15 H151 sing N N 352
OLA C15 H152 sing N N 353
OLA C16 C17 sing N N 354
OLA C16 H161 sing N N 355
OLA C16 H162 sing N N 356
OLA C17 C18 sing N N 357
OLA C17 H171 sing N N 358
OLA C17 H172 sing N N 359
OLA C18 H181 sing N N 360
OLA C18 H182 sing N N 361
OLA C18 H183 sing N N 362
PHE N CA sing N N 363
PHE N H sing N N 364
PHE N H2 sing N N 365
PHE CA C sing N N 366
PHE CA CB sing N N 367
PHE CA HA sing N N 368
PHE C O doub N N 369
PHE C OXT sing N N 370
PHE CB CG sing N N 371
PHE CB HB2 sing N N 372
PHE CB HB3 sing N N 373
PHE CG CD1 doub Y N 374
PHE CG CD2 sing Y N 375
PHE CD1 CE1 sing Y N 376
PHE CD1 HD1 sing N N 377
PHE CD2 CE2 doub Y N 378
PHE CD2 HD2 sing N N 379
PHE CE1 CZ doub Y N 380
PHE CE1 HE1 sing N N 381
PHE CE2 CZ sing Y N 382
PHE CE2 HE2 sing N N 383
PHE CZ HZ sing N N 384
PHE OXT HXT sing N N 385
PRO N CA sing N N 386
PRO N CD sing N N 387
PRO N H sing N N 388
PRO CA C sing N N 389
PRO CA CB sing N N 390
PRO CA HA sing N N 391
PRO C O doub N N 392
PRO C OXT sing N N 393
PRO CB CG sing N N 394
PRO CB HB2 sing N N 395
PRO CB HB3 sing N N 396
PRO CG CD sing N N 397
PRO CG HG2 sing N N 398
PRO CG HG3 sing N N 399
PRO CD HD2 sing N N 400
PRO CD HD3 sing N N 401
PRO OXT HXT sing N N 402
SER N CA sing N N 403
SER N H sing N N 404
SER N H2 sing N N 405
SER CA C sing N N 406
SER CA CB sing N N 407
SER CA HA sing N N 408
SER C O doub N N 409
SER C OXT sing N N 410
SER CB OG sing N N 411
SER CB HB2 sing N N 412
SER CB HB3 sing N N 413
SER OG HG sing N N 414
SER OXT HXT sing N N 415
SPH C1 O1 sing N N 416
SPH C1 C2 sing N N 417
SPH C1 H11 sing N N 418
SPH C1 H12 sing N N 419
SPH O1 HO1 sing N N 420
SPH C2 N2 sing N N 421
SPH C2 C3 sing N N 422
SPH C2 H2 sing N N 423
SPH N2 HN21 sing N N 424
SPH N2 HN22 sing N N 425
SPH C3 O3 sing N N 426
SPH C3 C4 sing N N 427
SPH C3 H3 sing N N 428
SPH O3 HO3 sing N N 429
SPH C4 C5 doub N Z 430
SPH C4 H4 sing N N 431
SPH C5 C6 sing N N 432
SPH C5 H5 sing N N 433
SPH C6 C7 sing N N 434
SPH C6 H61 sing N N 435
SPH C6 H62 sing N N 436
SPH C7 C8 sing N N 437
SPH C7 H71 sing N N 438
SPH C7 H72 sing N N 439
SPH C8 C9 sing N N 440
SPH C8 H81 sing N N 441
SPH C8 H82 sing N N 442
SPH C9 C10 sing N N 443
SPH C9 H91 sing N N 444
SPH C9 H92 sing N N 445
SPH C10 C11 sing N N 446
SPH C10 H101 sing N N 447
SPH C10 H102 sing N N 448
SPH C11 C12 sing N N 449
SPH C11 H111 sing N N 450
SPH C11 H112 sing N N 451
SPH C12 C13 sing N N 452
SPH C12 H121 sing N N 453
SPH C12 H122 sing N N 454
SPH C13 C14 sing N N 455
SPH C13 H131 sing N N 456
SPH C13 H132 sing N N 457
SPH C14 C15 sing N N 458
SPH C14 H141 sing N N 459
SPH C14 H142 sing N N 460
SPH C15 C16 sing N N 461
SPH C15 H151 sing N N 462
SPH C15 H152 sing N N 463
SPH C16 C17 sing N N 464
SPH C16 H161 sing N N 465
SPH C16 H162 sing N N 466
SPH C17 C18 sing N N 467
SPH C17 H171 sing N N 468
SPH C17 H172 sing N N 469
SPH C18 H181 sing N N 470
SPH C18 H182 sing N N 471
SPH C18 H183 sing N N 472
THR N CA sing N N 473
THR N H sing N N 474
THR N H2 sing N N 475
THR CA C sing N N 476
THR CA CB sing N N 477
THR CA HA sing N N 478
THR C O doub N N 479
THR C OXT sing N N 480
THR CB OG1 sing N N 481
THR CB CG2 sing N N 482
THR CB HB sing N N 483
THR OG1 HG1 sing N N 484
THR CG2 HG21 sing N N 485
THR CG2 HG22 sing N N 486
THR CG2 HG23 sing N N 487
THR OXT HXT sing N N 488
TRP N CA sing N N 489
TRP N H sing N N 490
TRP N H2 sing N N 491
TRP CA C sing N N 492
TRP CA CB sing N N 493
TRP CA HA sing N N 494
TRP C O doub N N 495
TRP C OXT sing N N 496
TRP CB CG sing N N 497
TRP CB HB2 sing N N 498
TRP CB HB3 sing N N 499
TRP CG CD1 doub Y N 500
TRP CG CD2 sing Y N 501
TRP CD1 NE1 sing Y N 502
TRP CD1 HD1 sing N N 503
TRP CD2 CE2 doub Y N 504
TRP CD2 CE3 sing Y N 505
TRP NE1 CE2 sing Y N 506
TRP NE1 HE1 sing N N 507
TRP CE2 CZ2 sing Y N 508
TRP CE3 CZ3 doub Y N 509
TRP CE3 HE3 sing N N 510
TRP CZ2 CH2 doub Y N 511
TRP CZ2 HZ2 sing N N 512
TRP CZ3 CH2 sing Y N 513
TRP CZ3 HZ3 sing N N 514
TRP CH2 HH2 sing N N 515
TRP OXT HXT sing N N 516
TYR N CA sing N N 517
TYR N H sing N N 518
TYR N H2 sing N N 519
TYR CA C sing N N 520
TYR CA CB sing N N 521
TYR CA HA sing N N 522
TYR C O doub N N 523
TYR C OXT sing N N 524
TYR CB CG sing N N 525
TYR CB HB2 sing N N 526
TYR CB HB3 sing N N 527
TYR CG CD1 doub Y N 528
TYR CG CD2 sing Y N 529
TYR CD1 CE1 sing Y N 530
TYR CD1 HD1 sing N N 531
TYR CD2 CE2 doub Y N 532
TYR CD2 HD2 sing N N 533
TYR CE1 CZ doub Y N 534
TYR CE1 HE1 sing N N 535
TYR CE2 CZ sing Y N 536
TYR CE2 HE2 sing N N 537
TYR CZ OH sing N N 538
TYR OH HH sing N N 539
TYR OXT HXT sing N N 540
VAL N CA sing N N 541
VAL N H sing N N 542
VAL N H2 sing N N 543
VAL CA C sing N N 544
VAL CA CB sing N N 545
VAL CA HA sing N N 546
VAL C O doub N N 547
VAL C OXT sing N N 548
VAL CB CG1 sing N N 549
VAL CB CG2 sing N N 550
VAL CB HB sing N N 551
VAL CG1 HG11 sing N N 552
VAL CG1 HG12 sing N N 553
VAL CG1 HG13 sing N N 554
VAL CG2 HG21 sing N N 555
VAL CG2 HG22 sing N N 556
VAL CG2 HG23 sing N N 557
VAL OXT HXT sing N N 558
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 BGC 1 B BGC 1 B LAT 300 n
B 2 GAL 2 B GAL 2 B LAT 300 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][a2112h-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0
3 2 '[][a-D-Glcp]{[(4+1)][b-D-Galp]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 GAL
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 BGC
_pdbx_entity_branch_link.atom_id_2 O4
_pdbx_entity_branch_link.leaving_atom_id_2 HO4
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 BGC 1 n
2 GAL 2 n
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 SPHINGOSINE SPH
4 'OLEIC ACID' OLA
5 N-OCTANE OCT
6 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1SWX
_pdbx_initial_refinement_model.details 'PDB ENTRY 1SWX'
#