HEADER GENE REGULATION 05-APR-04 1SZD TITLE STRUCTURAL BASIS FOR NICOTINAMIDE CLEAVAGE AND ADP-RIBOSE TRANSFER BY TITLE 2 NAD+-DEPENDENT SIR2 HISTONE/PROTEIN DEACETYLASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT DEACETYLASE HST2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN; COMPND 5 SYNONYM: HOMOLOGOUS TO SIR2 PROTEIN 2; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4 PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (GOLD); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: HST2 (1-294); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 13 OF THE PEPTIDE NATURALLY OCCURS IN SACCHAROMYCES CEREVISIAE (BAKER'S SOURCE 14 YEAST). KEYWDS HST2, SIR2, SIRTUIN, HISTONE DEACETYLASE, PROTEIN DEACETYLASE, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR K.ZHAO,R.HARSHAW,X.CHAI,R.MARMORSTEIN REVDAT 5 15-NOV-23 1SZD 1 REMARK REVDAT 4 23-AUG-23 1SZD 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1SZD 1 VERSN REVDAT 2 24-FEB-09 1SZD 1 VERSN REVDAT 1 15-JUN-04 1SZD 0 JRNL AUTH K.ZHAO,R.HARSHAW,X.CHAI,R.MARMORSTEIN JRNL TITL STRUCTURAL BASIS FOR NICOTINAMIDE CLEAVAGE AND ADP-RIBOSE JRNL TITL 2 TRANSFER BY NAD(+)-DEPENDENT SIR2 HISTONE/PROTEIN JRNL TITL 3 DEACETYLASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 8563 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15150415 JRNL DOI 10.1073/PNAS.0401057101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.ZHAO,R.HARSHAW,X.CHAI,R.MARMORSTEIN REMARK 1 TITL STRUCTURE AND AUTOREGULATION OF THE YEAST HST2 HOMOLOG OF REMARK 1 TITL 2 SIR2 REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 10 864 2003 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 14502267 REMARK 1 DOI 10.1038/NSB978 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.ZHAO,X.CHAI,A.CLEMENTS,R.MARMORSTEIN REMARK 1 TITL STRUCTURE OF THE YEAST HST2 PROTEIN DEACETYLASE IN TERNARY REMARK 1 TITL 2 COMPLEX WITH 2'-O-ACETYL ADP RIBOSE AND HISTONE PEPTIDE REMARK 1 REF STRUCTURE V. 11 1403 2003 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 14604530 REMARK 1 DOI 10.1016/J.STR.2003.09.016 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 236729.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 67216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1977 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8966 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 293 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2377 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.71000 REMARK 3 B22 (A**2) : -3.71000 REMARK 3 B33 (A**2) : 7.42000 REMARK 3 B12 (A**2) : -1.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.360 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.910 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.470 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 60.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : 018_ADR.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : 018_ADR.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NI MIRROR + NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 36.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1Q1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS-TRIS, PH 6.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.10000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.05000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.05000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -88.20000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 210 REMARK 465 GLY A 211 REMARK 465 LYS A 212 REMARK 465 HIS A 213 REMARK 465 PRO A 214 REMARK 465 GLN A 294 REMARK 465 LYS B 20 REMARK 465 ILE B 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 204 NH2 ARG A 204 4554 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 67.72 -115.61 REMARK 500 ASP A 75 95.65 -163.21 REMARK 500 THR A 208 33.23 -86.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 143 SG REMARK 620 2 CYS A 146 SG 116.8 REMARK 620 3 CYS A 170 SG 102.5 106.4 REMARK 620 4 CYS A 173 SG 92.9 122.1 114.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1989 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1990 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1991 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SZC RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR NICOTINAMIDE CLEAVAGE AND ADP-RIBOSE TRANSFER REMARK 900 BY NAD+-DEPENDENT SIR2 HISTONE/PROTEIN DEACETYLASES REMARK 900 RELATED ID: 1Q14 RELATED DB: PDB REMARK 900 STRUCTURE AND AUTOREGULATION OF THE YEAST HST2 HOMOLOG OF SIR2 REMARK 900 RELATED ID: 1Q1A RELATED DB: PDB REMARK 900 STRUCTURE OF THE YEAST HST2 PROTEIN DEACETYLASE IN TERNARY COMPLEX REMARK 900 WITH 2'-O-ACETYL ADP RIBOSE AND HISTONE PEPTIDE REMARK 900 RELATED ID: 1Q17 RELATED DB: PDB REMARK 900 STRUCTURE OF THE YEAST HST2 PROTEIN DEACETYLASE IN TERNARY COMPLEX REMARK 900 WITH 2'-O-ACETYL ADP RIBOSE AND HISTONE PEPTIDE DBREF 1SZD A 1 294 UNP P53686 HST2_YEAST 1 294 DBREF 1SZD B 12 21 UNP P02309 H4_YEAST 12 21 SEQADV 1SZD MET A -2 UNP P53686 EXPRESSION TAG SEQADV 1SZD ALA A -1 UNP P53686 EXPRESSION TAG SEQADV 1SZD SER A 0 UNP P53686 EXPRESSION TAG SEQADV 1SZD ALY B 16 UNP P02309 LYS 16 MODIFIED RESIDUE SEQRES 1 A 297 MET ALA SER MET SER VAL SER THR ALA SER THR GLU MET SEQRES 2 A 297 SER VAL ARG LYS ILE ALA ALA HIS MET LYS SER ASN PRO SEQRES 3 A 297 ASN ALA LYS VAL ILE PHE MET VAL GLY ALA GLY ILE SER SEQRES 4 A 297 THR SER CYS GLY ILE PRO ASP PHE ARG SER PRO GLY THR SEQRES 5 A 297 GLY LEU TYR HIS ASN LEU ALA ARG LEU LYS LEU PRO TYR SEQRES 6 A 297 PRO GLU ALA VAL PHE ASP VAL ASP PHE PHE GLN SER ASP SEQRES 7 A 297 PRO LEU PRO PHE TYR THR LEU ALA LYS GLU LEU TYR PRO SEQRES 8 A 297 GLY ASN PHE ARG PRO SER LYS PHE HIS TYR LEU LEU LYS SEQRES 9 A 297 LEU PHE GLN ASP LYS ASP VAL LEU LYS ARG VAL TYR THR SEQRES 10 A 297 GLN ASN ILE ASP THR LEU GLU ARG GLN ALA GLY VAL LYS SEQRES 11 A 297 ASP ASP LEU ILE ILE GLU ALA HIS GLY SER PHE ALA HIS SEQRES 12 A 297 CYS HIS CYS ILE GLY CYS GLY LYS VAL TYR PRO PRO GLN SEQRES 13 A 297 VAL PHE LYS SER LYS LEU ALA GLU HIS PRO ILE LYS ASP SEQRES 14 A 297 PHE VAL LYS CYS ASP VAL CYS GLY GLU LEU VAL LYS PRO SEQRES 15 A 297 ALA ILE VAL PHE PHE GLY GLU ASP LEU PRO ASP SER PHE SEQRES 16 A 297 SER GLU THR TRP LEU ASN ASP SER GLU TRP LEU ARG GLU SEQRES 17 A 297 LYS ILE THR THR SER GLY LYS HIS PRO GLN GLN PRO LEU SEQRES 18 A 297 VAL ILE VAL VAL GLY THR SER LEU ALA VAL TYR PRO PHE SEQRES 19 A 297 ALA SER LEU PRO GLU GLU ILE PRO ARG LYS VAL LYS ARG SEQRES 20 A 297 VAL LEU CYS ASN LEU GLU THR VAL GLY ASP PHE LYS ALA SEQRES 21 A 297 ASN LYS ARG PRO THR ASP LEU ILE VAL HIS GLN TYR SER SEQRES 22 A 297 ASP GLU PHE ALA GLU GLN LEU VAL GLU GLU LEU GLY TRP SEQRES 23 A 297 GLN GLU ASP PHE GLU LYS ILE LEU THR ALA GLN SEQRES 1 B 10 LYS GLY GLY ALA ALY ARG HIS ARG LYS ILE MODRES 1SZD ALY B 16 LYS N(6)-ACETYLLYSINE HET ALY B 16 12 HET CL A 401 1 HET ZN A 701 1 HET APR A1001 36 HET GOL A1989 6 HET GOL A1990 6 HET GOL A1991 6 HETNAM ALY N(6)-ACETYLLYSINE HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 CL CL 1- FORMUL 4 ZN ZN 2+ FORMUL 5 APR C15 H23 N5 O14 P2 FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *340(H2 O) HELIX 1 1 THR A 8 ASN A 22 1 15 HELIX 2 2 ALA A 33 GLY A 40 5 8 HELIX 3 3 THR A 49 LEU A 58 1 10 HELIX 4 4 TYR A 62 PHE A 67 5 6 HELIX 5 5 ASP A 68 ASP A 75 1 8 HELIX 6 6 PRO A 76 TYR A 87 1 12 HELIX 7 7 SER A 94 LYS A 106 1 13 HELIX 8 8 THR A 119 ALA A 124 1 6 HELIX 9 9 LYS A 127 ASP A 129 5 3 HELIX 10 10 PRO A 152 LEU A 159 1 8 HELIX 11 11 PRO A 189 THR A 208 1 20 HELIX 12 12 PRO A 230 LEU A 234 5 5 HELIX 13 13 GLY A 253 ASN A 258 1 6 HELIX 14 14 TYR A 269 GLY A 282 1 14 HELIX 15 15 TRP A 283 ALA A 293 1 11 SHEET 1 A 6 ILE A 131 GLU A 133 0 SHEET 2 A 6 LEU A 109 THR A 114 1 N THR A 114 O ILE A 132 SHEET 3 A 6 VAL A 27 VAL A 31 1 N PHE A 29 O TYR A 113 SHEET 4 A 6 LEU A 218 VAL A 222 1 O VAL A 222 N MET A 30 SHEET 5 A 6 ARG A 244 CYS A 247 1 O VAL A 245 N VAL A 221 SHEET 6 A 6 LEU A 264 VAL A 266 1 O VAL A 266 N LEU A 246 SHEET 1 B 3 VAL A 149 TYR A 150 0 SHEET 2 B 3 GLY A 136 CYS A 143 -1 N CYS A 141 O TYR A 150 SHEET 3 B 3 VAL A 177 ILE A 181 -1 O ALA A 180 N HIS A 140 SHEET 1 C 2 VAL A 228 TYR A 229 0 SHEET 2 C 2 ARG B 17 HIS B 18 -1 O ARG B 17 N TYR A 229 LINK C ALA B 15 N ALY B 16 1555 1555 1.33 LINK C ALY B 16 N ARG B 17 1555 1555 1.33 LINK SG CYS A 143 ZN ZN A 701 1555 1555 2.35 LINK SG CYS A 146 ZN ZN A 701 1555 1555 2.24 LINK SG CYS A 170 ZN ZN A 701 1555 1555 2.37 LINK SG CYS A 173 ZN ZN A 701 1555 1555 2.28 CISPEP 1 HIS A 162 PRO A 163 0 -0.07 CISPEP 2 TYR A 229 PRO A 230 0 0.09 SITE 1 AC1 4 CYS A 143 CYS A 146 CYS A 170 CYS A 173 SITE 1 AC2 32 GLY A 32 ALA A 33 GLY A 34 THR A 37 SITE 2 AC2 32 PHE A 44 ARG A 45 GLU A 64 GLN A 115 SITE 3 AC2 32 GLY A 223 THR A 224 SER A 225 VAL A 228 SITE 4 AC2 32 ASN A 248 LEU A 249 GLN A 268 TYR A 269 SITE 5 AC2 32 SER A 270 HOH A1999 HOH A2003 HOH A2010 SITE 6 AC2 32 HOH A2015 HOH A2042 HOH A2133 HOH A2134 SITE 7 AC2 32 HOH A2135 HOH A2147 HOH A2153 HOH A2162 SITE 8 AC2 32 HOH A2239 HOH A2311 ALY B 16 HIS B 18 SITE 1 AC3 5 SER A 193 TRP A 196 GLU A 237 HOH A2005 SITE 2 AC3 5 LYS B 12 SITE 1 AC4 2 GLY A 50 HOH A2142 SITE 1 AC5 5 LYS A 84 TYR A 87 ASN A 90 LEU A 159 SITE 2 AC5 5 ALA A 160 CRYST1 105.383 105.383 66.150 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009489 0.005479 0.000000 0.00000 SCALE2 0.000000 0.010957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015117 0.00000