HEADER IMMUNE SYSTEM 07-APR-04 1T04 TITLE THREE DIMENSIONAL STRUCTURE OF A HUMANIZED ANTI-IFN-GAMMA FAB IN C2 TITLE 2 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUZAF ANTIBODY LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE SOURCE IS ENGINEERED HUMAN CONSTANT AND FRAMEWORK COMPND 7 REGIONS WITH CDRS FROM MOUSE.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HUZAF ANTIBODY HEAVY CHAIN; COMPND 10 CHAIN: B, D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: THE SOURCE IS ENGINEERED HUMAN CONSTANT AND FRAMEWORK COMPND 13 REGIONS WITH CDRS FROM MOUSE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY ENGINEERING, HUMANIZED AND CHIMERIC ANTIBODY, FAB, THREE- KEYWDS 2 DIMENSIONAL STRUCTURE, GAMMA-INTERFERON, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.C.BOURNE,S.S.TERZYAN,G.CLOUD,N.F.LANDOLFI,M.VASQUEZ,A.B.EDMUNDSON REVDAT 5 23-AUG-23 1T04 1 REMARK REVDAT 4 25-DEC-19 1T04 1 REMARK SEQRES LINK REVDAT 3 24-FEB-09 1T04 1 VERSN REVDAT 2 19-OCT-04 1T04 1 SOURCE REVDAT 1 05-OCT-04 1T04 0 JRNL AUTH P.C.BOURNE,S.S.TERZYAN,G.CLOUD,N.F.LANDOLFI,M.VASQUEZ, JRNL AUTH 2 A.B.EDMUNDSON JRNL TITL THREE-DIMENSIONAL STRUCTURES OF A HUMANIZED ANTI-IFN-GAMMA JRNL TITL 2 FAB (HUZAF) IN TWO CRYSTAL FORMS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1761 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15388922 JRNL DOI 10.1107/S0907444904018670 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 17707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 868 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -26.18400 REMARK 3 B22 (A**2) : 17.41600 REMARK 3 B33 (A**2) : 8.76700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.43800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.390 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 31.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PCA.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PCA.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC BLUE OPTICS REMARK 200 OPTICS : OSMIC BLUE OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19324 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.490 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1T3F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, (NH4)2SO4, MGCL2, MES, PH REMARK 280 5.60, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.13700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.90250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.13700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 84.90250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 126 CG CD REMARK 480 LYS A 145 CE REMARK 480 LYS A 169 CG CD CE NZ REMARK 480 LYS A 190 CG CD CE NZ REMARK 480 LYS B 13 CD CE REMARK 480 LYS B 121 CG CD CE NZ REMARK 480 LYS B 214 CG NZ REMARK 480 LYS B 218 CG CD CE NZ REMARK 480 LYS C 126 CG CD CE NZ REMARK 480 LYS C 145 CE REMARK 480 LYS C 169 CE NZ REMARK 480 LYS C 190 CG REMARK 480 LYS D 13 CD CE REMARK 480 LYS D 121 CE NZ REMARK 480 LYS D 214 NZ REMARK 480 LYS D 218 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 130 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 7 129.03 -173.85 REMARK 500 VAL A 29 20.37 -140.09 REMARK 500 ASP A 30 -110.97 50.22 REMARK 500 TYR A 32 48.44 -75.79 REMARK 500 LEU A 47 -65.64 -104.96 REMARK 500 ALA A 51 -17.45 77.77 REMARK 500 SER A 52 -13.45 -151.82 REMARK 500 THR A 56 106.61 -48.00 REMARK 500 SER A 67 139.34 -175.14 REMARK 500 THR A 69 -4.35 -149.49 REMARK 500 ASP A 82 12.06 -67.58 REMARK 500 ALA A 84 -152.31 -173.13 REMARK 500 ASN A 93 -168.67 -120.14 REMARK 500 ASN A 138 72.65 31.36 REMARK 500 SER A 156 118.72 -168.09 REMARK 500 GLN A 166 119.11 -39.90 REMARK 500 LYS A 169 -53.62 -133.47 REMARK 500 LYS A 190 -71.70 -109.80 REMARK 500 GLU A 213 117.55 -34.19 REMARK 500 TYR B 27 -168.15 -175.68 REMARK 500 THR B 30 32.65 -85.52 REMARK 500 ASP B 55 -1.54 -140.88 REMARK 500 GLU B 89 -18.51 -49.69 REMARK 500 ALA B 92 -169.29 -171.73 REMARK 500 LEU B 101 -102.93 89.94 REMARK 500 LEU B 128 63.97 -117.49 REMARK 500 SER B 132 137.94 158.92 REMARK 500 PHE B 150 137.78 -176.79 REMARK 500 THR B 164 -37.19 -141.21 REMARK 500 SER B 181 135.44 -170.47 REMARK 500 SER C 7 124.52 -170.15 REMARK 500 VAL C 29 17.06 -146.20 REMARK 500 ASP C 30 -114.10 54.86 REMARK 500 TYR C 32 49.16 -83.39 REMARK 500 ALA C 51 -28.68 68.98 REMARK 500 THR C 56 104.82 -52.18 REMARK 500 ASP C 82 4.03 -61.66 REMARK 500 ALA C 84 -151.95 -166.93 REMARK 500 ASN C 138 60.99 22.39 REMARK 500 LYS C 169 -43.74 -133.13 REMARK 500 LYS C 183 -66.16 -24.65 REMARK 500 LYS C 190 -66.13 -103.37 REMARK 500 GLU C 213 106.90 -37.30 REMARK 500 TYR D 27 -169.01 -178.86 REMARK 500 THR D 30 39.30 -88.69 REMARK 500 ILE D 48 -63.03 -91.54 REMARK 500 GLU D 89 -30.77 -39.61 REMARK 500 ALA D 92 -177.11 173.83 REMARK 500 LEU D 101 -112.45 88.70 REMARK 500 LEU D 128 69.73 -119.41 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B2W RELATED DB: PDB REMARK 900 HUMANIZED FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY REMARK 900 RELATED ID: 1B4J RELATED DB: PDB REMARK 900 CHIMERIC FAB OF AN ANTI-GAMMA-INTERFERON ANTIBODY REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS NO SEQUENCE DATABASE REFERENCE FOR THIS ENTRY. REMARK 999 THE SEQUENCE WAS DETERMINED IN THE PROTEIN DESIGN REMARK 999 LABORATORY. DBREF 1T04 A 2 214 UNP Q6GMW1 Q6GMW1_HUMAN 24 236 DBREF 1T04 B 1 219 PDB 1T04 1T04 1 219 DBREF 1T04 C 2 214 UNP Q6GMW1 Q6GMW1_HUMAN 24 236 DBREF 1T04 D 1 219 PDB 1T04 1T04 1 219 SEQRES 1 A 214 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 A 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS LYS ALA SER SEQRES 3 A 214 GLU ASN VAL ASP THR TYR VAL SER TRP TYR GLN GLN LYS SEQRES 4 A 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR GLY ALA SER SEQRES 5 A 214 ASN ARG TYR THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 A 214 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLY GLN SER SEQRES 8 A 214 TYR ASN TYR PRO PHE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 A 214 GLU VAL LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 214 PHE ASN ARG GLY GLU CYS SEQRES 1 B 219 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 B 219 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 219 TYR ILE PHE THR SER SER TRP ILE ASN TRP VAL LYS GLN SEQRES 4 B 219 ALA PRO GLY GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 B 219 PRO SER ASP GLY GLU VAL HIS TYR ASN GLN ASP PHE LYS SEQRES 6 B 219 ASP LYS ALA THR LEU THR VAL ASP LYS SER THR ASN THR SEQRES 7 B 219 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 B 219 ALA VAL TYR TYR CYS ALA ARG GLY PHE LEU PRO TRP PHE SEQRES 9 B 219 ALA ASP TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 B 219 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 B 219 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 B 219 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 B 219 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 B 219 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 B 219 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 B 219 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 B 219 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 1 C 214 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 C 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS LYS ALA SER SEQRES 3 C 214 GLU ASN VAL ASP THR TYR VAL SER TRP TYR GLN GLN LYS SEQRES 4 C 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR GLY ALA SER SEQRES 5 C 214 ASN ARG TYR THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 C 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 C 214 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLY GLN SER SEQRES 8 C 214 TYR ASN TYR PRO PHE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 C 214 GLU VAL LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 C 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 C 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 C 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 C 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 C 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 C 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 C 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 C 214 PHE ASN ARG GLY GLU CYS SEQRES 1 D 219 PCA VAL GLN LEU VAL GLN SER GLY ALA GLU LEU LYS LYS SEQRES 2 D 219 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 D 219 TYR ILE PHE THR SER SER TRP ILE ASN TRP VAL LYS GLN SEQRES 4 D 219 ALA PRO GLY GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 D 219 PRO SER ASP GLY GLU VAL HIS TYR ASN GLN ASP PHE LYS SEQRES 6 D 219 ASP LYS ALA THR LEU THR VAL ASP LYS SER THR ASN THR SEQRES 7 D 219 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 D 219 ALA VAL TYR TYR CYS ALA ARG GLY PHE LEU PRO TRP PHE SEQRES 9 D 219 ALA ASP TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 D 219 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 D 219 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 D 219 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 D 219 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 D 219 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 D 219 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 D 219 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 D 219 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER MODRES 1T04 PCA B 1 GLN PYROGLUTAMIC ACID MODRES 1T04 PCA D 1 GLN PYROGLUTAMIC ACID HET PCA B 1 8 HET PCA D 1 8 HETNAM PCA PYROGLUTAMIC ACID FORMUL 2 PCA 2(C5 H7 N O3) FORMUL 5 HOH *47(H2 O) HELIX 1 1 SER A 121 SER A 127 1 7 HELIX 2 2 LYS A 183 LYS A 188 1 6 HELIX 3 3 ILE B 28 SER B 32 5 5 HELIX 4 4 GLN B 62 LYS B 65 5 4 HELIX 5 5 ARG B 87 THR B 91 5 5 HELIX 6 6 SER B 160 ALA B 162 5 3 HELIX 7 7 SER B 191 THR B 195 5 5 HELIX 8 8 LYS B 205 ASN B 208 5 4 HELIX 9 9 SER C 121 LYS C 126 1 6 HELIX 10 10 LYS C 183 LYS C 188 1 6 HELIX 11 11 ILE D 28 SER D 32 5 5 HELIX 12 12 LYS D 74 THR D 76 5 3 HELIX 13 13 ARG D 87 THR D 91 5 5 HELIX 14 14 SER D 160 ALA D 162 5 3 HELIX 15 15 SER D 191 LEU D 193 5 3 HELIX 16 16 LYS D 205 ASN D 208 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 THR A 20 ALA A 25 -1 O LYS A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 B 5 THR A 10 ALA A 13 0 SHEET 2 B 5 THR A 102 VAL A 106 1 O LYS A 103 N LEU A 11 SHEET 3 B 5 THR A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 B 5 VAL A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 5 LYS A 45 LEU A 46 -1 O LYS A 45 N GLN A 37 SHEET 1 C 4 THR A 10 ALA A 13 0 SHEET 2 C 4 THR A 102 VAL A 106 1 O LYS A 103 N LEU A 11 SHEET 3 C 4 THR A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 2 ILE A 48 TYR A 49 0 SHEET 2 D 2 ASN A 53 ARG A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 E 4 SER A 114 PHE A 118 0 SHEET 2 E 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 E 4 TYR A 173 SER A 182 -1 O LEU A 181 N ALA A 130 SHEET 4 E 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 F 4 ALA A 153 LEU A 154 0 SHEET 2 F 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 F 4 VAL A 191 THR A 197 -1 O THR A 197 N LYS A 145 SHEET 4 F 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 G 4 GLN B 3 GLN B 6 0 SHEET 2 G 4 VAL B 18 SER B 25 -1 O LYS B 23 N VAL B 5 SHEET 3 G 4 THR B 78 LEU B 83 -1 O ALA B 79 N CYS B 22 SHEET 4 G 4 ALA B 68 ASP B 73 -1 N THR B 71 O TYR B 80 SHEET 1 H 6 GLU B 10 LYS B 12 0 SHEET 2 H 6 THR B 111 VAL B 115 1 O THR B 114 N GLU B 10 SHEET 3 H 6 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 111 SHEET 4 H 6 TRP B 33 GLN B 39 -1 N ASN B 35 O ALA B 97 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O GLU B 46 N LYS B 38 SHEET 6 H 6 VAL B 58 TYR B 60 -1 O HIS B 59 N ARG B 50 SHEET 1 I 4 GLU B 10 LYS B 12 0 SHEET 2 I 4 THR B 111 VAL B 115 1 O THR B 114 N GLU B 10 SHEET 3 I 4 ALA B 92 GLY B 99 -1 N TYR B 94 O THR B 111 SHEET 4 I 4 PHE B 104 TRP B 107 -1 O ASP B 106 N ARG B 98 SHEET 1 J 4 PRO B 127 LEU B 128 0 SHEET 2 J 4 THR B 139 TYR B 149 -1 O GLY B 143 N LEU B 128 SHEET 3 J 4 TYR B 180 PRO B 189 -1 O TYR B 180 N TYR B 149 SHEET 4 J 4 VAL B 167 THR B 169 -1 N HIS B 168 O VAL B 185 SHEET 1 K 4 PRO B 127 LEU B 128 0 SHEET 2 K 4 THR B 139 TYR B 149 -1 O GLY B 143 N LEU B 128 SHEET 3 K 4 TYR B 180 PRO B 189 -1 O TYR B 180 N TYR B 149 SHEET 4 K 4 VAL B 173 LEU B 174 -1 N VAL B 173 O SER B 181 SHEET 1 L 3 THR B 155 TRP B 158 0 SHEET 2 L 3 ILE B 199 HIS B 204 -1 O ASN B 201 N SER B 157 SHEET 3 L 3 THR B 209 LYS B 214 -1 O THR B 209 N HIS B 204 SHEET 1 M 4 THR C 5 SER C 7 0 SHEET 2 M 4 THR C 20 LYS C 24 -1 O LYS C 24 N THR C 5 SHEET 3 M 4 ASP C 70 ILE C 75 -1 O PHE C 71 N CYS C 23 SHEET 4 M 4 PHE C 62 SER C 67 -1 N SER C 65 O THR C 72 SHEET 1 N 6 THR C 10 ALA C 13 0 SHEET 2 N 6 THR C 102 VAL C 106 1 O GLU C 105 N ALA C 13 SHEET 3 N 6 THR C 85 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 N 6 VAL C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 N 6 LYS C 45 TYR C 49 -1 O LYS C 45 N GLN C 37 SHEET 6 N 6 ASN C 53 ARG C 54 -1 O ASN C 53 N TYR C 49 SHEET 1 O 4 THR C 10 ALA C 13 0 SHEET 2 O 4 THR C 102 VAL C 106 1 O GLU C 105 N ALA C 13 SHEET 3 O 4 THR C 85 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 O 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 P 4 SER C 114 PHE C 118 0 SHEET 2 P 4 THR C 129 PHE C 139 -1 O VAL C 133 N PHE C 118 SHEET 3 P 4 TYR C 173 SER C 182 -1 O LEU C 181 N ALA C 130 SHEET 4 P 4 SER C 159 VAL C 163 -1 N GLN C 160 O THR C 178 SHEET 1 Q 4 ALA C 153 LEU C 154 0 SHEET 2 Q 4 ALA C 144 VAL C 150 -1 N VAL C 150 O ALA C 153 SHEET 3 Q 4 VAL C 191 HIS C 198 -1 O THR C 197 N LYS C 145 SHEET 4 Q 4 VAL C 205 ASN C 210 -1 O VAL C 205 N VAL C 196 SHEET 1 R 4 GLN D 3 GLN D 6 0 SHEET 2 R 4 VAL D 18 SER D 25 -1 O LYS D 23 N VAL D 5 SHEET 3 R 4 THR D 78 LEU D 83 -1 O LEU D 83 N VAL D 18 SHEET 4 R 4 ALA D 68 ASP D 73 -1 N THR D 71 O TYR D 80 SHEET 1 S 6 GLU D 10 LYS D 12 0 SHEET 2 S 6 THR D 111 VAL D 115 1 O THR D 114 N GLU D 10 SHEET 3 S 6 ALA D 92 GLY D 99 -1 N TYR D 94 O THR D 111 SHEET 4 S 6 TRP D 33 GLN D 39 -1 N TRP D 33 O GLY D 99 SHEET 5 S 6 GLU D 46 ILE D 51 -1 O GLU D 46 N LYS D 38 SHEET 6 S 6 VAL D 58 TYR D 60 -1 O HIS D 59 N ARG D 50 SHEET 1 T 4 GLU D 10 LYS D 12 0 SHEET 2 T 4 THR D 111 VAL D 115 1 O THR D 114 N GLU D 10 SHEET 3 T 4 ALA D 92 GLY D 99 -1 N TYR D 94 O THR D 111 SHEET 4 T 4 PHE D 104 TRP D 107 -1 O ALA D 105 N ARG D 98 SHEET 1 U 4 SER D 124 LEU D 128 0 SHEET 2 U 4 THR D 139 TYR D 149 -1 O LYS D 147 N SER D 124 SHEET 3 U 4 TYR D 180 PRO D 189 -1 O VAL D 188 N ALA D 140 SHEET 4 U 4 VAL D 167 THR D 169 -1 N HIS D 168 O VAL D 185 SHEET 1 V 4 SER D 124 LEU D 128 0 SHEET 2 V 4 THR D 139 TYR D 149 -1 O LYS D 147 N SER D 124 SHEET 3 V 4 TYR D 180 PRO D 189 -1 O VAL D 188 N ALA D 140 SHEET 4 V 4 VAL D 173 LEU D 174 -1 N VAL D 173 O SER D 181 SHEET 1 W 3 THR D 155 TRP D 158 0 SHEET 2 W 3 ILE D 199 HIS D 204 -1 O ASN D 201 N SER D 157 SHEET 3 W 3 THR D 209 LYS D 214 -1 O VAL D 211 N VAL D 202 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.02 SSBOND 4 CYS B 144 CYS B 200 1555 1555 2.03 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.03 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.03 SSBOND 7 CYS D 22 CYS D 96 1555 1555 2.03 SSBOND 8 CYS D 144 CYS D 200 1555 1555 2.03 LINK C PCA B 1 N VAL B 2 1555 1555 1.33 LINK C PCA D 1 N VAL D 2 1555 1555 1.33 CISPEP 1 SER A 7 PRO A 8 0 -0.09 CISPEP 2 TYR A 94 PRO A 95 0 -0.26 CISPEP 3 TYR A 140 PRO A 141 0 -0.01 CISPEP 4 PHE B 150 PRO B 151 0 0.01 CISPEP 5 GLU B 152 PRO B 153 0 -0.66 CISPEP 6 SER C 7 PRO C 8 0 -0.05 CISPEP 7 TYR C 94 PRO C 95 0 -0.16 CISPEP 8 TYR C 140 PRO C 141 0 0.17 CISPEP 9 PHE D 150 PRO D 151 0 -0.20 CISPEP 10 GLU D 152 PRO D 153 0 -0.15 CRYST1 82.274 169.805 72.825 90.00 97.68 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012155 0.000000 0.001639 0.00000 SCALE2 0.000000 0.005889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013856 0.00000