data_1T0E # _entry.id 1T0E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1T0E pdb_00001t0e 10.2210/pdb1t0e/pdb NDB UR0038 ? ? RCSB RCSB022155 ? ? WWPDB D_1000022155 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1T0E _pdbx_database_status.recvd_initial_deposition_date 2004-04-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1T0D _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shandrick, S.' 1 'Zhao, Q.' 2 'Han, Q.' 3 'Ayida, B.K.' 4 'Takahashi, M.' 5 'Winters, G.C.' 6 'Simonsen, K.B.' 7 'Vourloumis, D.' 8 'Hermann, T.' 9 # _citation.id primary _citation.title 'Monitoring molecular recognition of the ribosomal decoding site.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 43 _citation.page_first 3177 _citation.page_last 3182 _citation.year 2004 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15199571 _citation.pdbx_database_id_DOI 10.1002/anie.200454217 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shandrick, S.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Han, Q.' 3 ? primary 'Ayida, B.K.' 4 ? primary 'Takahashi, M.' 5 ? primary 'Winters, G.C.' 6 ? primary 'Simonsen, K.B.' 7 ? primary 'Vourloumis, D.' 8 ? primary 'Hermann, T.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*UP*CP*GP*G)-3'" 5860.515 1 ? ? ? ? 2 polymer syn "5'-R(*CP*GP*AP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*CP*C)-3'" 5360.284 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 water nat water 18.015 130 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGUGGUGAAGUCGCUCGG GGUGGUGAAGUCGCUCGG A ? 2 polyribonucleotide no no CGAGCGUCACACCACCC CGAGCGUCACACCACCC C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 G n 1 5 G n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 U n 1 16 C n 1 17 G n 1 18 G n 2 1 C n 2 2 G n 2 3 A n 2 4 G n 2 5 C n 2 6 G n 2 7 U n 2 8 C n 2 9 A n 2 10 C n 2 11 A n 2 12 C n 2 13 C n 2 14 A n 2 15 C n 2 16 C n 2 17 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n B 2 1 C 1 9 9 C C C . n B 2 2 G 2 10 10 G G C . n B 2 3 A 3 11 11 A A C . n B 2 4 G 4 12 12 G G C . n B 2 5 C 5 13 13 C C C . n B 2 6 G 6 14 14 G G C . n B 2 7 U 7 15 15 U U C . n B 2 8 C 8 16 16 C C C . n B 2 9 A 9 17 17 A A C . n B 2 10 C 10 18 18 C C C . n B 2 11 A 11 19 19 A A C . n B 2 12 C 12 20 20 C C C . n B 2 13 C 13 21 21 C C C . n B 2 14 A 14 22 22 A A C . n B 2 15 C 15 23 23 C C C . n B 2 16 C 16 24 24 C C C . n B 2 17 C 17 25 25 C C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 201 1 SO4 SO4 C . D 3 SO4 1 202 2 SO4 SO4 C . E 4 HOH 1 19 1 HOH TIP A . E 4 HOH 2 20 3 HOH TIP A . E 4 HOH 3 21 5 HOH TIP A . E 4 HOH 4 22 6 HOH TIP A . E 4 HOH 5 23 7 HOH TIP A . E 4 HOH 6 24 9 HOH TIP A . E 4 HOH 7 25 11 HOH TIP A . E 4 HOH 8 26 14 HOH TIP A . E 4 HOH 9 27 15 HOH TIP A . E 4 HOH 10 28 16 HOH TIP A . E 4 HOH 11 29 19 HOH TIP A . E 4 HOH 12 30 22 HOH TIP A . E 4 HOH 13 31 23 HOH TIP A . E 4 HOH 14 32 27 HOH TIP A . E 4 HOH 15 33 30 HOH TIP A . E 4 HOH 16 34 31 HOH TIP A . E 4 HOH 17 35 37 HOH TIP A . E 4 HOH 18 36 39 HOH TIP A . E 4 HOH 19 37 41 HOH TIP A . E 4 HOH 20 38 42 HOH TIP A . E 4 HOH 21 39 44 HOH TIP A . E 4 HOH 22 40 53 HOH TIP A . E 4 HOH 23 41 55 HOH TIP A . E 4 HOH 24 42 56 HOH TIP A . E 4 HOH 25 43 57 HOH TIP A . E 4 HOH 26 44 60 HOH TIP A . E 4 HOH 27 45 66 HOH TIP A . E 4 HOH 28 46 69 HOH TIP A . E 4 HOH 29 47 72 HOH TIP A . E 4 HOH 30 48 74 HOH TIP A . E 4 HOH 31 49 76 HOH TIP A . E 4 HOH 32 50 85 HOH TIP A . E 4 HOH 33 51 89 HOH TIP A . E 4 HOH 34 52 93 HOH TIP A . E 4 HOH 35 53 100 HOH TIP A . E 4 HOH 36 54 103 HOH TIP A . E 4 HOH 37 55 104 HOH TIP A . E 4 HOH 38 56 105 HOH TIP A . E 4 HOH 39 57 106 HOH TIP A . E 4 HOH 40 58 108 HOH TIP A . E 4 HOH 41 59 109 HOH TIP A . E 4 HOH 42 60 116 HOH TIP A . E 4 HOH 43 61 118 HOH TIP A . E 4 HOH 44 62 122 HOH TIP A . E 4 HOH 45 63 127 HOH TIP A . E 4 HOH 46 64 132 HOH TIP A . E 4 HOH 47 65 150 HOH TIP A . E 4 HOH 48 66 153 HOH TIP A . E 4 HOH 49 67 155 HOH TIP A . E 4 HOH 50 68 157 HOH TIP A . E 4 HOH 51 69 158 HOH TIP A . E 4 HOH 52 70 159 HOH TIP A . E 4 HOH 53 71 160 HOH TIP A . E 4 HOH 54 72 161 HOH TIP A . E 4 HOH 55 73 162 HOH TIP A . E 4 HOH 56 74 163 HOH TIP A . E 4 HOH 57 75 164 HOH TIP A . E 4 HOH 58 76 166 HOH TIP A . E 4 HOH 59 77 168 HOH TIP A . E 4 HOH 60 78 169 HOH TIP A . E 4 HOH 61 79 170 HOH TIP A . E 4 HOH 62 80 171 HOH TIP A . E 4 HOH 63 81 172 HOH TIP A . E 4 HOH 64 82 175 HOH TIP A . E 4 HOH 65 83 177 HOH TIP A . E 4 HOH 66 84 181 HOH TIP A . E 4 HOH 67 85 187 HOH TIP A . E 4 HOH 68 86 188 HOH TIP A . E 4 HOH 69 87 192 HOH TIP A . F 4 HOH 1 203 2 HOH TIP C . F 4 HOH 2 204 8 HOH TIP C . F 4 HOH 3 205 10 HOH TIP C . F 4 HOH 4 206 17 HOH TIP C . F 4 HOH 5 207 18 HOH TIP C . F 4 HOH 6 208 24 HOH TIP C . F 4 HOH 7 209 26 HOH TIP C . F 4 HOH 8 210 32 HOH TIP C . F 4 HOH 9 211 33 HOH TIP C . F 4 HOH 10 212 34 HOH TIP C . F 4 HOH 11 213 35 HOH TIP C . F 4 HOH 12 214 38 HOH TIP C . F 4 HOH 13 215 43 HOH TIP C . F 4 HOH 14 216 47 HOH TIP C . F 4 HOH 15 217 48 HOH TIP C . F 4 HOH 16 218 49 HOH TIP C . F 4 HOH 17 219 50 HOH TIP C . F 4 HOH 18 220 51 HOH TIP C . F 4 HOH 19 221 54 HOH TIP C . F 4 HOH 20 222 64 HOH TIP C . F 4 HOH 21 223 65 HOH TIP C . F 4 HOH 22 224 68 HOH TIP C . F 4 HOH 23 225 70 HOH TIP C . F 4 HOH 24 226 75 HOH TIP C . F 4 HOH 25 227 77 HOH TIP C . F 4 HOH 26 228 78 HOH TIP C . F 4 HOH 27 229 79 HOH TIP C . F 4 HOH 28 230 81 HOH TIP C . F 4 HOH 29 231 86 HOH TIP C . F 4 HOH 30 232 87 HOH TIP C . F 4 HOH 31 233 90 HOH TIP C . F 4 HOH 32 234 92 HOH TIP C . F 4 HOH 33 235 94 HOH TIP C . F 4 HOH 34 236 95 HOH TIP C . F 4 HOH 35 237 96 HOH TIP C . F 4 HOH 36 238 97 HOH TIP C . F 4 HOH 37 239 98 HOH TIP C . F 4 HOH 38 240 102 HOH TIP C . F 4 HOH 39 241 110 HOH TIP C . F 4 HOH 40 242 111 HOH TIP C . F 4 HOH 41 243 112 HOH TIP C . F 4 HOH 42 244 113 HOH TIP C . F 4 HOH 43 245 115 HOH TIP C . F 4 HOH 44 246 117 HOH TIP C . F 4 HOH 45 247 121 HOH TIP C . F 4 HOH 46 248 123 HOH TIP C . F 4 HOH 47 249 129 HOH TIP C . F 4 HOH 48 250 130 HOH TIP C . F 4 HOH 49 251 135 HOH TIP C . F 4 HOH 50 252 139 HOH TIP C . F 4 HOH 51 253 142 HOH TIP C . F 4 HOH 52 254 143 HOH TIP C . F 4 HOH 53 255 149 HOH TIP C . F 4 HOH 54 256 151 HOH TIP C . F 4 HOH 55 257 165 HOH TIP C . F 4 HOH 56 258 174 HOH TIP C . F 4 HOH 57 259 176 HOH TIP C . F 4 HOH 58 260 180 HOH TIP C . F 4 HOH 59 261 183 HOH TIP C . F 4 HOH 60 262 190 HOH TIP C . F 4 HOH 61 263 193 HOH TIP C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1T0E _cell.length_a 32.040 _cell.length_b 32.950 _cell.length_c 92.690 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T0E _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1T0E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.6 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.1 # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details 'Ammonium sulfate, magnesium acetate, cacodylate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Ammonium sulfate' ? ? ? 1 2 1 'magnesium acetate' ? ? ? 1 3 1 cacodylate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-01-07 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1T0E _reflns.observed_criterion_sigma_F 3.0 _reflns.observed_criterion_sigma_I 3.0 _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 30 _reflns.number_all 11356 _reflns.number_obs 11015 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.7 _reflns.B_iso_Wilson_estimate 22.6 _reflns.pdbx_redundancy 14.9 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 81.6 _reflns_shell.Rmerge_I_obs 0.164 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6.15 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 902 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1T0E _refine.ls_d_res_high 1.7 _refine.ls_d_res_low 8.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 11221 _refine.ls_number_reflns_obs 10711 _refine.ls_number_reflns_R_free 1096 _refine.ls_percent_reflns_obs 95.5 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2271 _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.238 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'solved the construct model' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model anistropic _refine.B_iso_mean 26.6 _refine.aniso_B[1][1] -0.952 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.522 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.429 _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1T0E _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 809 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 130 _refine_hist.number_atoms_total 949 _refine_hist.d_res_high 1.7 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.022 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d 1.9 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.percent_reflns_obs 81.5 _refine_ls_shell.R_factor_R_free 0.334 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1T0E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1T0E _struct.title 'Crystal Structure of 2-aminopurine labelled bacterial decoding site RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1T0E _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'BACTERIAL DECODING SITE RNA, 9-beta-D-Ribofuranosyl-9H-purin-2-amine, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1T0E 1T0E ? ? ? 2 2 PDB 1T0E 1T0E ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1T0E A 1 ? 18 ? 1T0E 1 ? 18 ? 1 18 2 2 1T0E C 1 ? 17 ? 1T0E 9 ? 25 ? 9 25 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 16 N3 ? ? A G 1 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 16 O2 ? ? A G 1 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 16 N4 ? ? A G 1 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 2 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 2 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 2 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 14 N1 ? ? A U 3 C A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 14 N6 ? ? A U 3 C A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 4 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 4 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 4 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 5 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 5 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 5 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 11 N1 ? ? A U 6 C A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 11 N6 ? ? A U 6 C A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 7 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 7 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 7 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N1 A ? ? 1_555 B C 8 N3 ? ? A G 10 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 N2 A ? ? 1_555 B C 8 O2 ? ? A G 10 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 O6 A ? ? 1_555 B C 8 N4 ? ? A G 10 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 B U 7 O4 ? ? A U 11 C U 15 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog24 hydrog ? ? A U 11 O2 ? ? ? 1_555 B U 7 N3 ? ? A U 11 C U 15 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog25 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 12 C G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 12 C G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 12 C G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 13 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 13 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 13 C C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 14 C G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 14 C G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 14 C G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 15 C A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 15 C A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 16 C G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 16 C G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 16 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 16 C G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 17 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 17 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 17 C C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C SO4 201 ? 7 'BINDING SITE FOR RESIDUE SO4 C 201' AC2 Software C SO4 202 ? 2 'BINDING SITE FOR RESIDUE SO4 C 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 A A 8 ? A A 8 . ? 1_555 ? 2 AC1 7 HOH E . ? HOH A 83 . ? 1_555 ? 3 AC1 7 U B 7 ? U C 15 . ? 1_555 ? 4 AC1 7 C B 8 ? C C 16 . ? 1_555 ? 5 AC1 7 A B 9 ? A C 17 . ? 1_555 ? 6 AC1 7 SO4 D . ? SO4 C 202 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH C 243 . ? 1_555 ? 8 AC2 2 C B 10 ? C C 18 . ? 1_555 ? 9 AC2 2 SO4 C . ? SO4 C 201 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O3'" A A 9 ? A 1_555 "O2'" C C 21 ? ? 3_555 2.15 2 1 "O2'" A A 9 ? A 1_555 "O4'" C A 22 ? ? 3_555 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A G 2 ? ? N2 A G 2 ? ? 1.407 1.341 0.066 0.010 N 2 1 C2 A G 10 ? B N2 A G 10 ? B 1.427 1.341 0.086 0.010 N 3 1 N1 A C 12 ? ? C2 A C 12 ? ? 1.463 1.397 0.066 0.010 N 4 1 "O5'" A G 17 ? ? "C5'" A G 17 ? ? 1.358 1.420 -0.062 0.009 N 5 1 N7 A G 18 ? ? C8 A G 18 ? ? 1.348 1.305 0.043 0.006 N 6 1 "O5'" C C 9 ? ? "C5'" C C 9 ? ? 1.358 1.420 -0.062 0.009 N 7 1 C6 C A 11 ? ? N1 C A 11 ? ? 1.394 1.351 0.043 0.007 N 8 1 C2 C G 14 ? ? N2 C G 14 ? ? 1.430 1.341 0.089 0.010 N 9 1 C6 C G 14 ? ? O6 C G 14 ? ? 1.293 1.237 0.056 0.009 N 10 1 C2 C U 15 ? ? O2 C U 15 ? ? 1.292 1.219 0.073 0.009 N 11 1 C5 C C 16 ? ? C6 C C 16 ? ? 1.395 1.339 0.056 0.008 N 12 1 "O5'" C A 17 ? ? "C5'" C A 17 ? ? 1.365 1.420 -0.055 0.009 N 13 1 C2 C C 18 ? ? O2 C C 18 ? ? 1.298 1.240 0.058 0.009 N 14 1 N1 C C 18 ? ? C2 C C 18 ? ? 1.329 1.397 -0.068 0.010 N 15 1 "O5'" C A 19 ? ? "C5'" C A 19 ? ? 1.364 1.420 -0.056 0.009 N 16 1 "O5'" C C 23 ? ? "C5'" C C 23 ? ? 1.345 1.420 -0.075 0.009 N 17 1 "C4'" C C 23 ? ? "C3'" C C 23 ? ? 1.455 1.521 -0.066 0.010 N 18 1 "O3'" C C 23 ? ? P C C 24 ? ? 1.481 1.607 -0.126 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A G 2 ? ? P A U 3 ? ? OP2 A U 3 ? ? 118.24 110.50 7.74 1.10 Y 2 1 "O3'" C C 16 ? ? P C A 17 ? ? OP2 C A 17 ? ? 117.68 110.50 7.18 1.10 Y 3 1 "O3'" C C 18 ? ? P C A 19 ? ? OP2 C A 19 ? ? 119.17 110.50 8.67 1.10 Y 4 1 "O3'" C C 21 ? ? P C A 22 ? ? OP2 C A 22 ? ? 121.04 110.50 10.54 1.10 Y 5 1 "O3'" C A 22 ? ? P C C 23 ? ? OP2 C C 23 ? ? 117.90 110.50 7.40 1.10 Y 6 1 "C5'" C C 23 ? ? "C4'" C C 23 ? ? "C3'" C C 23 ? ? 103.94 115.20 -11.26 1.40 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 8 ? A 0.075 'SIDE CHAIN' 2 1 G A 10 ? A 0.090 'SIDE CHAIN' 3 1 C A 12 ? ? 0.113 'SIDE CHAIN' 4 1 C C 23 ? ? 0.057 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 SO4 S S N N 114 SO4 O1 O N N 115 SO4 O2 O N N 116 SO4 O3 O N N 117 SO4 O4 O N N 118 U OP3 O N N 119 U P P N N 120 U OP1 O N N 121 U OP2 O N N 122 U "O5'" O N N 123 U "C5'" C N N 124 U "C4'" C N R 125 U "O4'" O N N 126 U "C3'" C N S 127 U "O3'" O N N 128 U "C2'" C N R 129 U "O2'" O N N 130 U "C1'" C N R 131 U N1 N N N 132 U C2 C N N 133 U O2 O N N 134 U N3 N N N 135 U C4 C N N 136 U O4 O N N 137 U C5 C N N 138 U C6 C N N 139 U HOP3 H N N 140 U HOP2 H N N 141 U "H5'" H N N 142 U "H5''" H N N 143 U "H4'" H N N 144 U "H3'" H N N 145 U "HO3'" H N N 146 U "H2'" H N N 147 U "HO2'" H N N 148 U "H1'" H N N 149 U H3 H N N 150 U H5 H N N 151 U H6 H N N 152 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SO4 S O1 doub N N 118 SO4 S O2 doub N N 119 SO4 S O3 sing N N 120 SO4 S O4 sing N N 121 U OP3 P sing N N 122 U OP3 HOP3 sing N N 123 U P OP1 doub N N 124 U P OP2 sing N N 125 U P "O5'" sing N N 126 U OP2 HOP2 sing N N 127 U "O5'" "C5'" sing N N 128 U "C5'" "C4'" sing N N 129 U "C5'" "H5'" sing N N 130 U "C5'" "H5''" sing N N 131 U "C4'" "O4'" sing N N 132 U "C4'" "C3'" sing N N 133 U "C4'" "H4'" sing N N 134 U "O4'" "C1'" sing N N 135 U "C3'" "O3'" sing N N 136 U "C3'" "C2'" sing N N 137 U "C3'" "H3'" sing N N 138 U "O3'" "HO3'" sing N N 139 U "C2'" "O2'" sing N N 140 U "C2'" "C1'" sing N N 141 U "C2'" "H2'" sing N N 142 U "O2'" "HO2'" sing N N 143 U "C1'" N1 sing N N 144 U "C1'" "H1'" sing N N 145 U N1 C2 sing N N 146 U N1 C6 sing N N 147 U C2 O2 doub N N 148 U C2 N3 sing N N 149 U N3 C4 sing N N 150 U N3 H3 sing N N 151 U C4 O4 doub N N 152 U C4 C5 sing N N 153 U C5 C6 doub N N 154 U C5 H5 sing N N 155 U C6 H6 sing N N 156 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1T0E 'a-form double helix' 1T0E 'mismatched base pair' 1T0E 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 16 1_555 -0.032 -0.140 -0.066 -5.289 -12.673 -2.452 1 A_G1:C24_C A 1 ? C 24 ? 19 1 1 A G 2 1_555 B C 15 1_555 -0.201 -0.015 -0.038 -8.979 -16.056 4.009 2 A_G2:C23_C A 2 ? C 23 ? 19 1 1 A U 3 1_555 B A 14 1_555 -0.255 -0.030 -0.065 2.206 -12.421 -1.555 3 A_U3:A22_C A 3 ? C 22 ? 20 1 1 A G 4 1_555 B C 13 1_555 -0.036 -0.126 -0.033 -6.700 -15.755 0.336 4 A_G4:C21_C A 4 ? C 21 ? 19 1 1 A G 5 1_555 B C 12 1_555 -0.345 -0.160 -0.034 -9.497 -20.250 2.977 5 A_G5:C20_C A 5 ? C 20 ? 19 1 1 A U 6 1_555 B A 11 1_555 0.282 -0.098 0.137 -6.328 -15.450 5.300 6 A_U6:A19_C A 6 ? C 19 ? 20 1 1 A G 7 1_555 B C 10 1_555 -0.161 -0.128 0.027 -7.621 -13.858 1.119 7 A_G7:C18_C A 7 ? C 18 ? 19 1 1 A G 10 1_555 B C 8 1_555 -0.526 -0.058 0.126 -16.279 -8.987 0.686 8 A_G10:C16_C A 10 ? C 16 ? 19 1 1 A U 11 1_555 B U 7 1_555 2.294 -1.692 -0.108 -4.017 -10.043 11.292 9 A_U11:U15_C A 11 ? C 15 ? 16 1 1 A C 12 1_555 B G 6 1_555 0.256 -0.133 -0.680 17.392 -6.498 0.827 10 A_C12:G14_C A 12 ? C 14 ? 19 1 1 A G 13 1_555 B C 5 1_555 -0.081 -0.141 0.012 -0.224 -5.074 -0.599 11 A_G13:C13_C A 13 ? C 13 ? 19 1 1 A C 14 1_555 B G 4 1_555 0.274 -0.259 -0.012 -1.341 -12.611 -0.602 12 A_C14:G12_C A 14 ? C 12 ? 19 1 1 A U 15 1_555 B A 3 1_555 -0.002 -0.197 0.048 -2.410 -12.360 4.480 13 A_U15:A11_C A 15 ? C 11 ? 20 1 1 A C 16 1_555 B G 2 1_555 0.191 -0.086 -0.027 3.478 -6.459 -0.138 14 A_C16:G10_C A 16 ? C 10 ? 19 1 1 A G 17 1_555 B C 1 1_555 -0.112 -0.154 -0.276 -8.555 -12.559 -0.054 15 A_G17:C9_C A 17 ? C 9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 16 1_555 A G 2 1_555 B C 15 1_555 0.831 -2.051 3.299 1.854 7.194 29.905 -5.190 -1.223 2.787 13.677 -3.524 30.794 1 AA_G1G2:C23C24_CC A 1 ? C 24 ? A 2 ? C 23 ? 1 A G 2 1_555 B C 15 1_555 A U 3 1_555 B A 14 1_555 -1.048 -1.946 2.978 -2.083 2.881 28.778 -4.455 1.684 2.840 5.769 4.171 28.992 2 AA_G2U3:A22C23_CC A 2 ? C 23 ? A 3 ? C 22 ? 1 A U 3 1_555 B A 14 1_555 A G 4 1_555 B C 13 1_555 0.374 -1.557 3.376 0.170 12.821 32.659 -4.417 -0.597 2.602 21.782 -0.288 35.021 3 AA_U3G4:C21A22_CC A 3 ? C 22 ? A 4 ? C 21 ? 1 A G 4 1_555 B C 13 1_555 A G 5 1_555 B C 12 1_555 0.277 -1.765 3.295 0.658 8.911 30.954 -4.671 -0.389 2.700 16.276 -1.201 32.187 4 AA_G4G5:C20C21_CC A 4 ? C 21 ? A 5 ? C 20 ? 1 A G 5 1_555 B C 12 1_555 A U 6 1_555 B A 11 1_555 0.069 -1.123 3.090 -0.962 5.139 35.397 -2.510 -0.241 2.901 8.396 1.572 35.769 5 AA_G5U6:A19C20_CC A 5 ? C 20 ? A 6 ? C 19 ? 1 A U 6 1_555 B A 11 1_555 A G 7 1_555 B C 10 1_555 -0.101 -1.412 3.208 0.968 13.364 30.188 -4.523 0.326 2.382 24.216 -1.755 32.965 6 AA_U6G7:C18A19_CC A 6 ? C 19 ? A 7 ? C 18 ? 1 A G 10 1_555 B C 8 1_555 A U 11 1_555 B U 7 1_555 0.501 -1.153 3.130 5.251 6.441 45.629 -1.981 -0.217 2.987 8.225 -6.706 46.340 7 AA_G10U11:U15C16_CC A 10 ? C 16 ? A 11 ? C 15 ? 1 A U 11 1_555 B U 7 1_555 A C 12 1_555 B G 6 1_555 -0.122 -1.811 2.677 5.942 8.785 15.870 -8.512 2.429 1.365 28.092 -19.001 19.069 8 AA_U11C12:G14U15_CC A 11 ? C 15 ? A 12 ? C 14 ? 1 A C 12 1_555 B G 6 1_555 A G 13 1_555 B C 5 1_555 -1.184 -1.906 3.698 -8.679 8.604 30.972 -4.923 0.465 3.272 15.381 15.516 33.241 9 AA_C12G13:C13G14_CC A 12 ? C 14 ? A 13 ? C 13 ? 1 A G 13 1_555 B C 5 1_555 A C 14 1_555 B G 4 1_555 -0.122 -1.818 3.313 0.367 3.925 32.329 -3.914 0.281 3.075 7.017 -0.657 32.562 10 AA_G13C14:G12C13_CC A 13 ? C 13 ? A 14 ? C 12 ? 1 A C 14 1_555 B G 4 1_555 A U 15 1_555 B A 3 1_555 0.838 -1.803 3.196 3.087 7.318 30.833 -4.529 -1.005 2.774 13.486 -5.688 31.815 11 AA_C14U15:A11G12_CC A 14 ? C 12 ? A 15 ? C 11 ? 1 A U 15 1_555 B A 3 1_555 A C 16 1_555 B G 2 1_555 -0.315 -1.683 3.182 0.895 3.818 30.084 -3.938 0.772 2.941 7.316 -1.715 30.333 12 AA_U15C16:G10A11_CC A 15 ? C 11 ? A 16 ? C 10 ? 1 A C 16 1_555 B G 2 1_555 A G 17 1_555 B C 1 1_555 1.029 -2.164 3.579 3.258 8.656 29.427 -5.794 -1.288 2.933 16.533 -6.223 30.816 13 AA_C16G17:C9G10_CC A 16 ? C 10 ? A 17 ? C 9 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'solved the construct model' # _atom_sites.entry_id 1T0E _atom_sites.fract_transf_matrix[1][1] 0.031211 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030349 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010789 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_