HEADER CHAPERONE 13-APR-04 1T0Y TITLE SOLUTION STRUCTURE OF A UBIQUITIN-LIKE DOMAIN FROM TUBULIN-BINDING TITLE 2 COFACTOR B COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN FOLDING COFACTOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL UBIQUITIN-LIKE DOMAIN; COMPND 5 SYNONYM: TUBULIN-SPECIFIC CHAPERONE B, CYTOSKELETON-ASSOCIATED COMPND 6 PROTEIN 1, CKAP1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: 5O73 OR F53F4.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SG13009[PREP4]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30T KEYWDS UBIQUITIN-LIKE, CYTOSKELETON, MICROTUBULE, TUBULIN, CESG, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC KEYWDS 3 STRUCTURAL GENOMICS, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.L.LYTLE,F.C.PETERSON,S.H.QUI,M.LUO,B.F.VOLKMAN,J.L.MARKLEY,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 7 02-MAR-22 1T0Y 1 REMARK SEQADV REVDAT 6 24-FEB-09 1T0Y 1 VERSN REVDAT 5 12-FEB-08 1T0Y 1 REMARK REVDAT 4 01-FEB-05 1T0Y 1 AUTHOR KEYWDS REMARK REVDAT 3 23-NOV-04 1T0Y 1 JRNL REVDAT 2 21-SEP-04 1T0Y 1 KEYWDS REMARK HEADER TITLE REVDAT 1 27-APR-04 1T0Y 0 JRNL AUTH B.L.LYTLE,F.C.PETERSON,S.H.QIU,M.LUO,Q.ZHAO,J.L.MARKLEY, JRNL AUTH 2 B.F.VOLKMAN JRNL TITL SOLUTION STRUCTURE OF A UBIQUITIN-LIKE DOMAIN FROM JRNL TITL 2 TUBULIN-BINDING COFACTOR B. JRNL REF J.BIOL.CHEM. V. 279 46787 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15364906 JRNL DOI 10.1074/JBC.M409422200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, CYANA 1.0.6, XPLOR-NIH 2.0.6 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), HERRMANN, GUENTERT, REMARK 3 WUETHRICH (CYANA), SCHWIETERS, KUSZEWSKI, TJANDRA, REMARK 3 CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE C-TERMINAL RESIDUES 91-120 WERE REMARK 3 DISORDERED (AS EVIDENCED BY 15N RELAXATION DATA) AND WERE REMARK 3 EXCLUDED FROM THE MODEL. INITIAL STRUCTURES WERE GENERATED USING REMARK 3 THE CANDID MODULE OF CYANA. ADDITIONAL NOE ASSIGNMENTS WERE REMARK 3 DETERMINED MANUALLY. PHI AND PSI TORSION ANGLE CONSTRAINTS WERE REMARK 3 GENERATED FROM CHEMICAL SHIFT DATABASE SEARCHING USING THE REMARK 3 PROGRAM TALOS (G. CORNILESCU). REMARK 4 REMARK 4 1T0Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022175. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL + 20 MM NAPO4 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM COFACTOR B UBIQUITIN-LIKE REMARK 210 DOMAIN U-15N, 13C; 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER; 50 MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, XEASY 1.4, SPSCAN REMARK 210 1.1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS FOLLOWED REMARK 210 BY CARTESIAN MOLECULAR DYNAMICS REMARK 210 IN EXPLICIT SOLVENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: CHEMICAL SHIFT ASSIGNMENTS WERE OBTAINED FROM STANDARD 3D REMARK 210 TRIPLE-RESONANCE EXPERIMENTS, USING THE AUTOMATED METHOD OF REMARK 210 GARANT (C. BARTELS) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 PHE A 91 REMARK 465 LYS A 92 REMARK 465 ASP A 93 REMARK 465 GLU A 94 REMARK 465 SER A 95 REMARK 465 MET A 96 REMARK 465 VAL A 97 REMARK 465 GLU A 98 REMARK 465 LYS A 99 REMARK 465 TYR A 100 REMARK 465 GLU A 101 REMARK 465 MET A 102 REMARK 465 SER A 103 REMARK 465 ASP A 104 REMARK 465 ASP A 105 REMARK 465 THR A 106 REMARK 465 TYR A 107 REMARK 465 GLY A 108 REMARK 465 LYS A 109 REMARK 465 ARG A 110 REMARK 465 THR A 111 REMARK 465 ASP A 112 REMARK 465 SER A 113 REMARK 465 VAL A 114 REMARK 465 ARG A 115 REMARK 465 ALA A 116 REMARK 465 TRP A 117 REMARK 465 LYS A 118 REMARK 465 LYS A 119 REMARK 465 LYS A 120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 55 -52.39 174.78 REMARK 500 1 LEU A 61 -94.04 -78.94 REMARK 500 1 THR A 62 -3.68 79.46 REMARK 500 1 ARG A 74 175.70 63.22 REMARK 500 2 ASP A 52 -175.63 -67.80 REMARK 500 2 ASP A 54 -65.06 -147.10 REMARK 500 2 ASP A 55 -47.16 170.56 REMARK 500 2 LEU A 61 -125.64 -92.03 REMARK 500 2 THR A 62 6.80 82.09 REMARK 500 2 ASP A 63 -72.00 -60.74 REMARK 500 3 ASP A 55 -35.06 175.51 REMARK 500 3 LEU A 61 -148.23 -87.61 REMARK 500 3 THR A 62 -2.38 104.26 REMARK 500 4 ASP A 55 -46.32 -174.89 REMARK 500 4 LEU A 61 -95.96 -104.61 REMARK 500 4 THR A 62 -2.93 79.69 REMARK 500 5 ASP A 55 -64.17 73.19 REMARK 500 5 LEU A 61 -151.46 -81.95 REMARK 500 5 THR A 62 -2.71 95.87 REMARK 500 6 ASP A 54 -72.50 -87.07 REMARK 500 6 ASP A 55 -32.58 -178.44 REMARK 500 6 LEU A 61 -86.00 -72.19 REMARK 500 6 THR A 62 -3.53 80.59 REMARK 500 6 GLU A 89 71.92 66.09 REMARK 500 7 ASP A 54 -46.40 69.78 REMARK 500 7 ASP A 55 -30.54 -164.76 REMARK 500 7 THR A 62 -3.77 79.69 REMARK 500 8 LEU A 61 -97.13 -110.65 REMARK 500 8 THR A 62 -1.03 80.32 REMARK 500 8 GLU A 89 92.32 63.90 REMARK 500 9 ASP A 55 -39.74 174.88 REMARK 500 9 LEU A 61 -94.91 38.43 REMARK 500 9 THR A 62 -3.58 82.16 REMARK 500 9 ASP A 63 -162.79 176.00 REMARK 500 9 GLU A 89 -34.74 60.45 REMARK 500 10 ASP A 54 -67.26 72.11 REMARK 500 10 LEU A 61 -95.02 -72.74 REMARK 500 10 THR A 62 -3.12 79.12 REMARK 500 10 ASP A 63 -72.67 -64.76 REMARK 500 10 GLU A 89 69.44 71.33 REMARK 500 11 GLU A 3 67.12 -100.54 REMARK 500 11 ASP A 54 86.63 -165.69 REMARK 500 11 ASP A 55 17.94 -167.96 REMARK 500 11 GLN A 56 -165.08 60.19 REMARK 500 11 LEU A 61 -101.18 -94.43 REMARK 500 11 ASP A 63 -76.62 -54.42 REMARK 500 11 GLU A 89 85.20 52.49 REMARK 500 12 THR A 42 -167.04 -100.65 REMARK 500 12 ASP A 52 -151.84 -81.69 REMARK 500 12 LEU A 61 -155.08 -118.49 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LPL RELATED DB: PDB REMARK 900 CAP-GLY DOMAIN OF F53F4.3 REMARK 900 RELATED ID: GO.33910 RELATED DB: TARGETDB DBREF 1T0Y A 1 120 UNP Q20728 YXHK_CAEEL 1 120 SEQADV 1T0Y GLY A -1 UNP Q20728 CLONING ARTIFACT SEQADV 1T0Y SER A 0 UNP Q20728 CLONING ARTIFACT SEQRES 1 A 122 GLY SER MET THR GLU VAL TYR ASP LEU GLU ILE THR THR SEQRES 2 A 122 ASN ALA THR ASP PHE PRO MET GLU LYS LYS TYR PRO ALA SEQRES 3 A 122 GLY MET SER LEU ASN ASP LEU LYS LYS LYS LEU GLU LEU SEQRES 4 A 122 VAL VAL GLY THR THR VAL ASP SER MET ARG ILE GLN LEU SEQRES 5 A 122 PHE ASP GLY ASP ASP GLN LEU LYS GLY GLU LEU THR ASP SEQRES 6 A 122 GLY ALA LYS SER LEU LYS ASP LEU GLY VAL ARG ASP GLY SEQRES 7 A 122 TYR ARG ILE HIS ALA VAL ASP VAL THR GLY GLY ASN GLU SEQRES 8 A 122 ASP PHE LYS ASP GLU SER MET VAL GLU LYS TYR GLU MET SEQRES 9 A 122 SER ASP ASP THR TYR GLY LYS ARG THR ASP SER VAL ARG SEQRES 10 A 122 ALA TRP LYS LYS LYS HELIX 1 1 SER A 27 GLY A 40 1 14 SHEET 1 A 5 MET A 18 PRO A 23 0 SHEET 2 A 5 VAL A 4 THR A 11 -1 N ILE A 9 O MET A 18 SHEET 3 A 5 TYR A 77 ASP A 83 1 O ALA A 81 N THR A 10 SHEET 4 A 5 MET A 46 PHE A 51 -1 N PHE A 51 O ARG A 78 SHEET 5 A 5 LEU A 57 GLU A 60 -1 O GLY A 59 N LEU A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1