HEADER ISOMERASE 14-APR-04 1T10 TITLE PHOSPHOGLUCOSE ISOMERASE FROM LEISHMANIA MEXICANA IN COMPLEX WITH TITLE 2 SUBSTRATE D-FRUCTOSE-6-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOGLUCOSE ISOMERASE; GPI; PGI; PHOSPHOHEXOSE ISOMERASE; COMPND 5 PHI; COMPND 6 EC: 5.3.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THE PRIMARY REFERENCE POINTS TO AN INCORRECT PDB ID, COMPND 9 1Q1I SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA MEXICANA; SOURCE 3 ORGANISM_TAXID: 44270; SOURCE 4 STRAIN: MEXICANA; SOURCE 5 GENE: PGI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHOSPHOGLUCOSE ISOMERASE; SUBSTRATE; D-FRUCTOSE-6-PHOSPHATE, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.T.CORDEIRO,O.T.THIEMANN REVDAT 6 14-FEB-24 1T10 1 HETSYN REVDAT 5 29-JUL-20 1T10 1 COMPND REMARK HETNAM SITE REVDAT 4 13-JUL-11 1T10 1 VERSN REVDAT 3 23-JUN-09 1T10 1 REMARK REVDAT 2 24-FEB-09 1T10 1 VERSN REVDAT 1 29-JUN-04 1T10 0 JRNL AUTH A.T.CORDEIRO,P.A.MICHELS,L.F.DELBONI,O.T.THIEMANN JRNL TITL THE CRYSTAL STRUCTURE OF GLUCOSE-6-PHOSPHATE ISOMERASE FROM JRNL TITL 2 LEISHMANIA MEXICANA REVEALS NOVEL ACTIVE SITE FEATURES JRNL REF EUR.J.BIOCHEM. V. 271 2765 2004 JRNL REFN ISSN 0014-2956 JRNL PMID 15206941 JRNL DOI 10.1111/J.1432-1033.2004.04205.X REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.09 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1618 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4355 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 58.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.315 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4463 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3974 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6045 ; 1.692 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9241 ; 0.968 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 6.837 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;37.226 ;24.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 755 ;19.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;24.485 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 670 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5004 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 914 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1161 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4717 ; 0.261 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2420 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.236 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 142 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2749 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4421 ; 1.272 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1714 ; 1.798 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1624 ; 2.947 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 604 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 RESIDUE RANGE : A 1002 A 1181 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2200 23.0550 147.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.2354 REMARK 3 T33: 0.0647 T12: -0.0197 REMARK 3 T13: 0.0609 T23: 0.0909 REMARK 3 L TENSOR REMARK 3 L11: 0.8227 L22: 2.0904 REMARK 3 L33: 1.8039 L12: 0.2177 REMARK 3 L13: -0.0147 L23: 0.4202 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: 0.1928 S13: 0.0464 REMARK 3 S21: 0.3636 S22: 0.2442 S23: 0.1550 REMARK 3 S31: 0.2068 S32: 0.0004 S33: -0.2017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1T10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 74.536 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, PH 9, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.69633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 233.39267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 175.04450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 291.74083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.34817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 116.69633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 233.39267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 291.74083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 175.04450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 58.34817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A HOMODIMER FORMED BY THE 2-FOLD REMARK 300 CRYSTALLOGRAPHIC ROTATION APPLIED CHAIN A IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 42.56450 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 73.72388 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 291.74083 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 TYR A 4 REMARK 465 PHE A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 10 REMARK 465 HIS A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ILE A 18 REMARK 465 ASN A 19 REMARK 465 GLY A 20 REMARK 465 CYS A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 ALA A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 THR A 29 REMARK 465 PHE A 30 REMARK 465 ASN A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 TYR A 34 REMARK 465 GLU A 35 REMARK 465 VAL A 36 REMARK 465 ALA A 37 REMARK 465 ARG A 38 REMARK 465 LYS A 39 REMARK 465 THR A 40 REMARK 465 LYS A 41 REMARK 465 MET A 42 REMARK 465 LEU A 43 REMARK 465 GLY A 44 REMARK 465 VAL A 45 REMARK 465 THR A 46 REMARK 465 ASP A 47 REMARK 465 SER A 48 REMARK 465 LEU A 605 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 573 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 355 O HOH A 1062 1.95 REMARK 500 CG ASN A 198 O HOH A 1124 2.08 REMARK 500 ND2 ASN A 198 O HOH A 1124 2.08 REMARK 500 O ILE A 255 O HOH A 1176 2.14 REMARK 500 CG2 ILE A 454 O HOH A 1004 2.15 REMARK 500 O TYR A 197 O HOH A 1124 2.15 REMARK 500 NH2 ARG A 125 O THR A 362 2.16 REMARK 500 OD1 ASN A 593 O HOH A 1138 2.16 REMARK 500 NZ LYS A 490 O HOH A 1031 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 409 SD MET A 409 CE -0.449 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 164 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 235 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 470 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 561 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 587 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 31.44 -99.93 REMARK 500 ASP A 95 14.98 59.80 REMARK 500 ARG A 156 114.50 -39.64 REMARK 500 ASP A 208 -50.72 -137.11 REMARK 500 SER A 330 -158.50 -89.56 REMARK 500 ASP A 394 118.10 -166.89 REMARK 500 LYS A 419 -13.54 -49.02 REMARK 500 SER A 420 158.04 78.32 REMARK 500 THR A 427 -140.81 -106.31 REMARK 500 THR A 437 -72.50 66.30 REMARK 500 ALA A 442 -125.02 -132.36 REMARK 500 PHE A 443 1.68 -62.09 REMARK 500 HIS A 471 -61.47 -16.56 REMARK 500 ALA A 508 39.66 -79.68 REMARK 500 GLN A 562 64.70 -157.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 436 THR A 437 -140.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 1T10 A 1 605 UNP P42861 G6PI_LEIME 1 605 SEQRES 1 A 605 MET SER ASP TYR PHE SER LYS LEU LYS GLU HIS VAL VAL SEQRES 2 A 605 GLU SER THR GLU ILE ASN GLY CYS THR PRO SER ILE ALA SEQRES 3 A 605 THR ALA THR PHE ASN ALA PRO TYR GLU VAL ALA ARG LYS SEQRES 4 A 605 THR LYS MET LEU GLY VAL THR ASP SER SER LEU LEU ASN SEQRES 5 A 605 LEU PRO ALA TRP LYS ARG LEU GLN SER LEU TYR GLU LYS SEQRES 6 A 605 TYR GLY ASN ASP SER ILE LEU SER HIS PHE GLU LYS ASP SEQRES 7 A 605 HIS GLN ARG PHE GLN ARG TYR SER ILE GLU ILE ASP LEU SEQRES 8 A 605 HIS SER ASP ASP ASN PHE LEU PHE LEU ASP TYR SER LYS SEQRES 9 A 605 SER HIS ILE ASN ASP GLU ILE LYS ASP ALA LEU VAL ALA SEQRES 10 A 605 LEU ALA GLU GLU ARG GLY VAL ARG ALA PHE ALA LYS ALA SEQRES 11 A 605 MET PHE ASP GLY GLN ARG VAL ASN SER THR GLU ASN ARG SEQRES 12 A 605 ALA VAL LEU HIS VAL ALA LEU ARG ASN ARG SER ASN ARG SEQRES 13 A 605 PRO ILE ILE VAL ASP GLY LYS ASP VAL MET SER ASP VAL SEQRES 14 A 605 ASN ASN VAL LEU ALA GLN MET LYS ASP PHE THR GLU ARG SEQRES 15 A 605 VAL ARG SER GLY GLU TRP LYS GLY GLN THR GLY LYS SER SEQRES 16 A 605 ILE TYR ASN ILE VAL ASN ILE GLY ILE GLY GLY SER ASP SEQRES 17 A 605 LEU GLY PRO VAL MET VAL THR GLU ALA LEU LYS PRO PHE SEQRES 18 A 605 SER LYS ARG ASP LEU HIS CYS PHE PHE VAL SER ASN VAL SEQRES 19 A 605 ASP GLY THR HIS MET ALA GLU VAL LEU LYS GLN VAL ASN SEQRES 20 A 605 LEU GLU GLU THR ILE PHE ILE ILE ALA SER LYS THR PHE SEQRES 21 A 605 THR THR GLN GLU THR LEU THR ASN ALA MET SER ALA ARG SEQRES 22 A 605 ASN ALA LEU MET SER TYR LEU LYS GLU ASN GLY ILE SER SEQRES 23 A 605 THR ASP GLY ALA VAL ALA LYS HIS PHE VAL ALA LEU SER SEQRES 24 A 605 THR ASN THR GLU LYS VAL ARG GLU PHE GLY ILE ASP THR SEQRES 25 A 605 VAL ASN MET PHE ALA PHE TRP ASP TRP VAL GLY GLY ARG SEQRES 26 A 605 TYR SER VAL TRP SER ALA ILE GLY LEU SER VAL MET LEU SEQRES 27 A 605 SER ILE GLY TYR ASP ASN PHE VAL GLU PHE LEU THR GLY SEQRES 28 A 605 ALA HIS VAL MET ASP ASN HIS PHE ALA SER THR PRO THR SEQRES 29 A 605 GLU GLN ASN LEU PRO MET MET LEU ALA LEU VAL GLY ILE SEQRES 30 A 605 TRP TYR ASN ASN PHE PHE GLY SER GLU THR GLN ALA VAL SEQRES 31 A 605 LEU PRO TYR ASP GLN TYR LEU TRP ARG LEU PRO ALA TYR SEQRES 32 A 605 LEU GLN GLN LEU ASP MET GLU SER ASN GLY LYS GLY VAL SEQRES 33 A 605 THR LYS LYS SER GLY ALA VAL ALA VAL GLN THR GLY PRO SEQRES 34 A 605 ILE VAL PHE GLY GLU ALA GLY THR ASN GLY GLN HIS ALA SEQRES 35 A 605 PHE TYR GLN LEU ILE HIS GLN GLY THR LYS ILE ILE PRO SEQRES 36 A 605 CYS ASP PHE ILE GLY CYS VAL GLN THR GLN ASN ARG VAL SEQRES 37 A 605 GLY ASP HIS HIS ARG THR LEU MET SER ASN PHE PHE ALA SEQRES 38 A 605 GLN THR GLU ALA LEU MET VAL GLY LYS ASN ALA GLU GLU SEQRES 39 A 605 VAL ARG GLN GLU LEU VAL LYS SER GLY MET SER GLY ASP SEQRES 40 A 605 ALA ILE GLU ASN MET ILE PRO HIS LYS THR PHE THR GLY SEQRES 41 A 605 SER ARG PRO SER ASN SER ILE LEU VAL ASN ALA LEU THR SEQRES 42 A 605 PRO ARG ALA LEU GLY ALA ILE ILE ALA MET TYR GLU HIS SEQRES 43 A 605 LYS VAL LEU VAL GLN GLY ALA ILE TRP GLY ILE ASN SER SEQRES 44 A 605 TYR ASP GLN TRP GLY VAL GLU LEU GLY LYS VAL LEU ALA SEQRES 45 A 605 LYS SER ILE LEU PRO GLN LEU LYS SER GLY ASN ILE VAL SEQRES 46 A 605 SER ASP HIS ASP GLY SER THR ASN GLY LEU ILE ASN MET SEQRES 47 A 605 PHE ASN THR ARG ALA HIS LEU HET F6P A1001 16 HETNAM F6P 6-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETSYN F6P FRUCTOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D-FRUCTOSE; 6- HETSYN 2 F6P O-PHOSPHONO-D-FRUCTOSE; 6-O-PHOSPHONO-FRUCTOSE FORMUL 2 F6P C6 H13 O9 P FORMUL 3 HOH *180(H2 O) HELIX 1 1 SER A 49 ASN A 52 5 4 HELIX 2 2 LEU A 53 GLY A 67 1 15 HELIX 3 3 SER A 70 ASP A 78 1 9 HELIX 4 4 GLN A 80 TYR A 85 1 6 HELIX 5 5 ASN A 108 ARG A 122 1 15 HELIX 6 6 GLY A 123 ASP A 133 1 11 HELIX 7 7 LEU A 146 ARG A 151 1 6 HELIX 8 8 VAL A 165 GLY A 186 1 22 HELIX 9 9 ILE A 204 SER A 207 5 4 HELIX 10 10 ASP A 208 LEU A 218 1 11 HELIX 11 11 LYS A 219 SER A 222 5 4 HELIX 12 12 GLY A 236 LYS A 244 1 9 HELIX 13 13 ASN A 247 GLU A 249 5 3 HELIX 14 14 THR A 262 ASN A 283 1 22 HELIX 15 15 GLY A 289 HIS A 294 1 6 HELIX 16 16 ASN A 301 PHE A 308 1 8 HELIX 17 17 ASP A 311 VAL A 313 5 3 HELIX 18 18 GLY A 323 SER A 327 5 5 HELIX 19 19 SER A 330 ILE A 332 5 3 HELIX 20 20 GLY A 333 THR A 362 1 30 HELIX 21 21 PRO A 363 GLN A 366 5 4 HELIX 22 22 ASN A 367 PHE A 382 1 16 HELIX 23 23 ASP A 394 TRP A 398 5 5 HELIX 24 24 ARG A 399 GLY A 413 1 15 HELIX 25 25 THR A 437 ALA A 442 5 6 HELIX 26 26 PHE A 443 GLY A 450 1 8 HELIX 27 27 ASP A 470 GLY A 489 1 20 HELIX 28 28 ASN A 491 SER A 502 1 12 HELIX 29 29 MET A 512 THR A 517 5 6 HELIX 30 30 THR A 533 GLY A 556 1 24 HELIX 31 31 GLN A 562 GLY A 564 5 3 HELIX 32 32 VAL A 565 LEU A 576 1 12 HELIX 33 33 PRO A 577 LEU A 579 5 3 HELIX 34 34 ASP A 589 ALA A 603 1 15 SHEET 1 A 6 SER A 86 ASP A 90 0 SHEET 2 A 6 PHE A 97 ASP A 101 -1 O LEU A 100 N ILE A 87 SHEET 3 A 6 ASN A 525 VAL A 529 -1 O LEU A 528 N PHE A 99 SHEET 4 A 6 CYS A 456 CYS A 461 1 N PHE A 458 O ASN A 525 SHEET 5 A 6 THR A 387 PRO A 392 1 N LEU A 391 O ASP A 457 SHEET 6 A 6 ILE A 430 PHE A 432 1 O PHE A 432 N VAL A 390 SHEET 1 B 2 ILE A 159 VAL A 160 0 SHEET 2 B 2 LYS A 163 ASP A 164 -1 O LYS A 163 N VAL A 160 SHEET 1 C 5 HIS A 227 VAL A 231 0 SHEET 2 C 5 ASN A 198 ILE A 202 1 N ASN A 201 O PHE A 229 SHEET 3 C 5 THR A 251 ALA A 256 1 O ILE A 254 N ILE A 202 SHEET 4 C 5 PHE A 295 LEU A 298 1 O LEU A 298 N ILE A 255 SHEET 5 C 5 MET A 315 PHE A 316 1 O PHE A 316 N ALA A 297 CRYST1 85.129 85.129 350.089 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011747 0.006782 0.000000 0.00000 SCALE2 0.000000 0.013564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002856 0.00000