HEADER LIPID TRANSPORT 15-APR-04 1T12 TITLE SOLUTION STRUCTURE OF A NEW LTP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSPECIFIC LIPID-TRANSFER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 24-114; COMPND 5 SYNONYM: LTP 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: LTP1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS CYSTEIN RICH PROTEIN; LIPID TRANSFER PROTEIN, LIPID TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR P.DA SILVA,C.LANDON,B.INDUSTRI,M.PONCHET,F.VOVELLE REVDAT 4 30-OCT-24 1T12 1 REMARK REVDAT 3 02-MAR-22 1T12 1 REMARK REVDAT 2 24-FEB-09 1T12 1 VERSN REVDAT 1 05-APR-05 1T12 0 JRNL AUTH P.DA SILVA,C.LANDON,B.INDUSTRI,A.MARAIS,D.MARION,M.PONCHET, JRNL AUTH 2 F.VOVELLE JRNL TITL SOLUTION STRUCTURE OF A TOBACCO LIPID TRANSFER PROTEIN JRNL TITL 2 EXHIBITING NEW BIOPHYSICAL AND BIOLOGICAL FEATURES JRNL REF PROTEINS V. 59 356 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15726627 JRNL DOI 10.1002/PROT.20405 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRDRAW, ARIA REMARK 3 AUTHORS : DELAGLIO (NMRDRAW), BRUNGER, LINGE (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE ARE BASED ON A TOTAL OF REMARK 3 1526 RESTRAINTS AND 47 DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 1T12 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022179. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8MM TOBACCO LTP1 15N, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; REMARK 210 3D_15N-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_TOCSY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, ARIA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 RESTRAINT ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR AND 3D REMARK 210 HETERONUCLEAR NMR TECHNIQUES AND MOLECULAR MODELLING REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 4 ARG A 44 CG - CD - NE ANGL. DEV. = 13.2 DEGREES REMARK 500 4 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 5 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 5 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 6 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 7 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 21 -51.18 -140.90 REMARK 500 1 SER A 37 33.63 -84.31 REMARK 500 1 ALA A 38 33.16 -145.13 REMARK 500 1 THR A 40 47.31 -77.85 REMARK 500 1 THR A 41 -62.30 62.84 REMARK 500 1 SER A 59 -74.55 -74.79 REMARK 500 1 SER A 84 -58.65 -159.28 REMARK 500 2 THR A 21 -47.51 -140.78 REMARK 500 2 SER A 37 50.18 -105.15 REMARK 500 2 ALA A 38 38.82 -151.92 REMARK 500 2 THR A 40 45.31 -107.58 REMARK 500 2 THR A 41 -68.34 66.80 REMARK 500 2 ALA A 57 -49.52 179.80 REMARK 500 2 VAL A 75 -159.12 -105.42 REMARK 500 2 ASN A 76 67.10 -112.35 REMARK 500 2 SER A 84 -53.43 -165.42 REMARK 500 2 THR A 85 105.36 -37.52 REMARK 500 3 ILE A 2 150.71 -39.60 REMARK 500 3 ASN A 20 59.15 83.31 REMARK 500 3 THR A 21 -67.90 -148.34 REMARK 500 3 PRO A 23 -168.57 -71.74 REMARK 500 3 ALA A 38 -57.40 -154.93 REMARK 500 3 ARG A 39 66.69 -66.94 REMARK 500 3 THR A 40 40.99 -140.32 REMARK 500 3 THR A 41 -66.26 62.99 REMARK 500 3 ALA A 57 -53.85 -172.52 REMARK 500 3 SER A 84 -53.71 -170.76 REMARK 500 3 THR A 85 116.80 -37.19 REMARK 500 3 CYS A 87 39.75 -143.18 REMARK 500 3 LYS A 89 55.30 -152.05 REMARK 500 4 ASN A 20 29.70 39.82 REMARK 500 4 ALA A 38 -54.13 -172.24 REMARK 500 4 THR A 40 39.87 -147.08 REMARK 500 4 THR A 41 -75.01 52.98 REMARK 500 4 TYR A 79 146.48 -179.38 REMARK 500 4 LYS A 80 50.27 -112.17 REMARK 500 4 ILE A 81 59.55 29.75 REMARK 500 4 PRO A 83 11.97 -65.02 REMARK 500 4 SER A 84 26.91 -140.95 REMARK 500 5 THR A 21 -49.98 -159.87 REMARK 500 5 ARG A 26 31.24 -91.25 REMARK 500 5 SER A 37 47.94 -91.47 REMARK 500 5 ALA A 38 48.44 -158.89 REMARK 500 5 ARG A 39 -41.36 -148.85 REMARK 500 5 THR A 40 46.31 -59.81 REMARK 500 5 THR A 41 -57.34 67.46 REMARK 500 5 SER A 84 -53.14 -177.84 REMARK 500 6 ILE A 2 150.94 -48.28 REMARK 500 6 THR A 21 -46.89 -160.19 REMARK 500 6 SER A 37 38.68 -92.74 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 17 0.08 SIDE CHAIN REMARK 500 4 TYR A 79 0.08 SIDE CHAIN REMARK 500 5 TYR A 17 0.07 SIDE CHAIN REMARK 500 8 TYR A 17 0.09 SIDE CHAIN REMARK 500 9 TYR A 17 0.07 SIDE CHAIN REMARK 500 9 TYR A 79 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GH1 RELATED DB: PDB DBREF 1T12 A 1 91 UNP Q42952 NLTP1_TOBAC 24 114 SEQRES 1 A 91 ALA ILE THR CYS GLY GLN VAL THR SER ASN LEU ALA PRO SEQRES 2 A 91 CYS LEU ALA TYR LEU ARG ASN THR GLY PRO LEU GLY ARG SEQRES 3 A 91 CYS CYS GLY GLY VAL LYS ALA LEU VAL ASN SER ALA ARG SEQRES 4 A 91 THR THR GLU ASP ARG GLN ILE ALA CYS THR CYS LEU LYS SEQRES 5 A 91 SER ALA ALA GLY ALA ILE SER GLY ILE ASN LEU GLY LYS SEQRES 6 A 91 ALA ALA GLY LEU PRO SER THR CYS GLY VAL ASN ILE PRO SEQRES 7 A 91 TYR LYS ILE SER PRO SER THR ASP CYS SER LYS VAL GLN HELIX 1 1 THR A 3 LEU A 11 1 9 HELIX 2 2 LEU A 11 ARG A 19 1 9 HELIX 3 3 ARG A 26 SER A 37 1 12 HELIX 4 4 THR A 41 ILE A 58 1 18 HELIX 5 5 ASN A 62 CYS A 73 1 12 SSBOND 1 CYS A 4 CYS A 50 1555 1555 2.03 SSBOND 2 CYS A 14 CYS A 27 1555 1555 2.03 SSBOND 3 CYS A 28 CYS A 73 1555 1555 2.03 SSBOND 4 CYS A 48 CYS A 87 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1