HEADER LIGASE 16-APR-04 1T1H TITLE NMR SOLUTION STRUCTURE OF THE U BOX DOMAIN FROM ATPUB14, AN ARMADILLO TITLE 2 REPEAT CONTAINING PROTEIN FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARMADILLO REPEAT CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: U-BOX DOMAIN (249-321); COMPND 5 SYNONYM: GSPEF-ATPUB14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS UBIQUITIN LIGASE, E3 LIGASE, ARABIDOPSIS, U-BOX, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ANDERSEN,B.B.KRAGELUND,A.N.OLSEN,F.H.LARSEN,N.-H.CHUA,F.M.POULSEN, AUTHOR 2 K.SKRIVER REVDAT 4 02-MAR-22 1T1H 1 REMARK SEQADV REVDAT 3 24-FEB-09 1T1H 1 VERSN REVDAT 2 28-SEP-04 1T1H 1 JRNL REVDAT 1 03-AUG-04 1T1H 0 JRNL AUTH P.ANDERSEN,B.B.KRAGELUND,A.N.OLSEN,F.H.LARSEN,N.-H.CHUA, JRNL AUTH 2 F.M.POULSEN,K.SKRIVER JRNL TITL STRUCTURE AND BIOCHEMICAL FUNCTION OF A PROTOTYPICAL JRNL TITL 2 ARABIDOPSIS U-BOX DOMAIN JRNL REF J.BIOL.CHEM. V. 279 40053 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15231834 JRNL DOI 10.1074/JBC.M405057200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1083 NOE-DERIVED DISTANCE CONSTRAINTS AND 88 DIHEDRAL ANGLE REMARK 3 CONTRAINTS REMARK 4 REMARK 4 1T1H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022193. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE, 0.15M REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM GSPEF-ATPUB14(249-321) U REMARK 210 -15N,13C, 20 MM SODIUM PHOSPHATE, REMARK 210 0.15 M NACL, 1 MM DTT, 10% D20; REMARK 210 0.6 MM GSPEF-ATPUB14(249-321) U- REMARK 210 15N,13C, 20 MM SODIUM PHOSPHATE, REMARK 210 0.15 M NACL, 1 MM DTT, 10% D20; REMARK 210 0.6 MM GSPEF-ATPUB14(249-321) U- REMARK 210 15N, 20 MM SODIUM PHOSPHATE, REMARK 210 0.15 M NACL, 1 MM DTT, 10% D20; REMARK 210 0.4 MM GSPEF-ATPUB14(249-321) U- REMARK 210 15N,13C, 20 MM SODIUM PHOSPHATE, REMARK 210 0.15 M NACL, 1 MM DTT, 99.96% REMARK 210 D20; 0.5 MM GSPEF-ATPUB14(249- REMARK 210 321) U-15N,13C, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.15 M NACL, 1 MM DTT, REMARK 210 99.96% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N_HSQC, HNCACB,CBCA(CO)NH, REMARK 210 HNCO; HN(CA)CO; 3D_15N-SEPARATED REMARK 210 TOCSY, 3D_15N-SEPARATED NOESY; REMARK 210 3D_13C-SEPARATED TOCSY; 3D_13C- REMARK 210 SEPARATED TOCSY, 3D_13C- REMARK 210 SEPARATED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PRONTO 20020517, CYANA, X-PLOR REMARK 210 V3.840 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA TYR A 251 HD11 LEU A 307 1.23 REMARK 500 OD1 ASP A 263 HZ1 LYS A 308 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 246 40.47 -80.83 REMARK 500 1 GLU A 250 -159.20 -106.22 REMARK 500 1 TYR A 251 -42.96 76.67 REMARK 500 1 PHE A 252 -94.16 -132.19 REMARK 500 1 SER A 257 20.75 -149.12 REMARK 500 1 LEU A 260 152.07 67.54 REMARK 500 1 LYS A 262 -69.83 -104.91 REMARK 500 1 THR A 269 -12.40 87.27 REMARK 500 1 GLN A 293 32.37 71.93 REMARK 500 1 LEU A 297 -77.54 66.66 REMARK 500 2 PRO A 249 -73.67 -75.07 REMARK 500 2 TYR A 251 -86.66 -174.03 REMARK 500 2 MET A 261 165.53 61.59 REMARK 500 2 THR A 269 -18.98 88.95 REMARK 500 2 THR A 295 129.13 69.50 REMARK 500 2 LEU A 297 -85.20 61.32 REMARK 500 3 PRO A 246 33.19 -86.96 REMARK 500 3 TYR A 251 -33.13 -172.41 REMARK 500 3 PHE A 252 -75.26 -83.39 REMARK 500 3 LEU A 260 84.72 41.69 REMARK 500 3 MET A 261 145.39 -34.65 REMARK 500 3 THR A 269 -13.65 86.17 REMARK 500 3 LYS A 287 36.75 -159.85 REMARK 500 3 LYS A 291 -65.84 -96.34 REMARK 500 3 THR A 295 123.65 70.53 REMARK 500 3 LEU A 297 -87.25 65.44 REMARK 500 4 SER A 245 116.88 70.77 REMARK 500 4 PHE A 248 91.39 64.84 REMARK 500 4 PHE A 252 -69.95 -150.93 REMARK 500 4 SER A 257 20.57 -151.29 REMARK 500 4 LEU A 260 90.85 59.58 REMARK 500 4 MET A 261 154.59 -47.18 REMARK 500 4 THR A 269 -19.73 85.80 REMARK 500 4 LYS A 287 45.79 -146.67 REMARK 500 4 SER A 292 14.88 -162.14 REMARK 500 4 GLN A 293 70.50 60.13 REMARK 500 4 THR A 295 110.37 61.50 REMARK 500 4 LEU A 297 91.59 60.81 REMARK 500 4 HIS A 298 103.57 63.21 REMARK 500 5 GLU A 247 81.88 48.48 REMARK 500 5 GLU A 250 -174.87 173.27 REMARK 500 5 PHE A 252 -75.86 -139.60 REMARK 500 5 SER A 257 20.79 -150.22 REMARK 500 5 LEU A 260 -15.54 69.72 REMARK 500 5 MET A 261 145.64 69.68 REMARK 500 5 THR A 269 -26.12 89.49 REMARK 500 5 SER A 292 -29.17 -154.48 REMARK 500 5 THR A 295 121.43 70.05 REMARK 500 6 PHE A 248 82.63 -154.99 REMARK 500 6 GLU A 250 -68.60 -102.38 REMARK 500 REMARK 500 THIS ENTRY HAS 181 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N87 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A U BOX DOMAIN FROM THE YEAST PROTEIN PRP19P DBREF 1T1H A 249 321 UNP Q8VZ40 PUB14_ARATH 249 321 SEQADV 1T1H GLY A 244 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H SER A 245 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H PRO A 246 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H GLU A 247 UNP Q8VZ40 CLONING ARTIFACT SEQADV 1T1H PHE A 248 UNP Q8VZ40 CLONING ARTIFACT SEQRES 1 A 78 GLY SER PRO GLU PHE PRO GLU TYR PHE ARG CYS PRO ILE SEQRES 2 A 78 SER LEU GLU LEU MET LYS ASP PRO VAL ILE VAL SER THR SEQRES 3 A 78 GLY GLN THR TYR GLU ARG SER SER ILE GLN LYS TRP LEU SEQRES 4 A 78 ASP ALA GLY HIS LYS THR CYS PRO LYS SER GLN GLU THR SEQRES 5 A 78 LEU LEU HIS ALA GLY LEU THR PRO ASN TYR VAL LEU LYS SEQRES 6 A 78 SER LEU ILE ALA LEU TRP CYS GLU SER ASN GLY ILE GLU HELIX 1 1 ARG A 275 ASP A 283 1 9 HELIX 2 2 LEU A 307 ASN A 318 1 12 SHEET 1 A 3 GLN A 271 GLU A 274 0 SHEET 2 A 3 PRO A 264 VAL A 267 -1 N VAL A 265 O TYR A 273 SHEET 3 A 3 THR A 302 PRO A 303 -1 O THR A 302 N ILE A 266 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1