HEADER OXIDOREDUCTASE 21-APR-04 1T2C TITLE PLASMODIUM FALCIPARUM LACTATE DEHYDROGENASE COMPLEXED WITH NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LDH-P; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: LDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK223 KEYWDS BINARY COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMERON,J.READ,R.TRANTER,V.J.WINTER,R.B.SESSIONS,R.L.BRADY,L.VIVAS, AUTHOR 2 A.EASTON,H.KENDRICK,S.L.CROFT,D.BARROS,J.L.LAVANDERA,J.J.MARTIN, AUTHOR 3 F.RISCO,S.GARCIA-OCHOA,F.J.GAMO,L.SANZ,L.LEON,J.R.RUIZ,R.GABARRO, AUTHOR 4 A.MALLO,F.G.DE LAS HERAS REVDAT 5 23-AUG-23 1T2C 1 REMARK SEQADV REVDAT 4 13-JUL-11 1T2C 1 VERSN REVDAT 3 24-FEB-09 1T2C 1 VERSN REVDAT 2 27-JUL-04 1T2C 1 JRNL REVDAT 1 11-MAY-04 1T2C 0 JRNL AUTH A.CAMERON,J.READ,R.TRANTER,V.J.WINTER,R.B.SESSIONS, JRNL AUTH 2 R.L.BRADY,L.VIVAS,A.EASTON,H.KENDRICK,S.L.CROFT,D.BARROS, JRNL AUTH 3 J.L.LAVANDERA,J.J.MARTIN,F.RISCO,S.GARCIA-OCHOA,F.J.GAMO, JRNL AUTH 4 L.SANZ,L.LEON,J.R.RUIZ,R.GABARRO,A.MALLO,F.G.DE LAS HERAS JRNL TITL IDENTIFICATION AND ACTIVITY OF A SERIES OF AZOLE-BASED JRNL TITL 2 COMPOUNDS WITH LACTATE DEHYDROGENASE-DIRECTED ANTI-MALARIAL JRNL TITL 3 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 279 31429 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15117937 JRNL DOI 10.1074/JBC.M402433200 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 20101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1091 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1279 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1360 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.1970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.785 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2344 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2193 ; 0.012 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3185 ; 1.815 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5101 ; 1.646 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 5.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2561 ; 0.027 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 407 ; 0.039 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 428 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2183 ; 0.233 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1156 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 133 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.293 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 83 ; 0.355 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.468 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 0.985 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2415 ; 1.665 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 844 ; 2.819 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 770 ; 4.273 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE PEPTIDE BOND DISTANCE BETWEEN RESIDUES 110 AND REMARK 3 111 IS 1.86A. REMARK 4 REMARK 4 1T2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.10500 REMARK 200 FOR SHELL : 10.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1LDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, HEPES, IMIDAZOLE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.56800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.56200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.10600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.56800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.56200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.10600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.56800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.56200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.10600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.56800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.56200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.10600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 21370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.13600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.12400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 81.13600 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 87.12400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 17 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 PRO A 103B REMARK 475 GLY A 103C REMARK 475 LYS A 103D REMARK 475 SER A 103E REMARK 475 ASP A 105A REMARK 475 LYS A 105B REMARK 475 GLU A 106 REMARK 475 TRP A 107 REMARK 475 ASN A 108 REMARK 475 ARG A 109 REMARK 475 ASP A 110 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 56 CD CE NZ REMARK 480 THR A 101 CB OG1 CG2 REMARK 480 LYS A 102 CB CG CD CE NZ REMARK 480 ASP A 111 CB CG OD1 OD2 REMARK 480 LEU A 112 CB CG CD1 CD2 REMARK 480 LYS A 118 CG CD CE NZ REMARK 480 LYS A 129 CD CE NZ REMARK 480 LYS A 198 CE NZ REMARK 480 GLU A 226 CG CD OE1 OE2 REMARK 480 HIS A 243 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 312 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 435 O HOH A 436 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 364 O HOH A 365 3655 0.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 86 CG ASP A 86 OD1 0.145 REMARK 500 THR A 101 CA THR A 101 CB 0.227 REMARK 500 LYS A 102 CA LYS A 102 CB -0.274 REMARK 500 ALA A 103A C PRO A 103B N -0.315 REMARK 500 ASP A 110 CB ASP A 110 CG 0.152 REMARK 500 LYS A 129 CG LYS A 129 CD -0.388 REMARK 500 GLU A 226 CB GLU A 226 CG -0.135 REMARK 500 LYS A 312 CD LYS A 312 CE -0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 102 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 ALA A 103A CA - C - N ANGL. DEV. = 44.9 DEGREES REMARK 500 ALA A 103A O - C - N ANGL. DEV. = -48.7 DEGREES REMARK 500 PRO A 103B C - N - CA ANGL. DEV. = 26.0 DEGREES REMARK 500 PRO A 103B C - N - CD ANGL. DEV. = -27.0 DEGREES REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 111 CB - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 ASP A 111 N - CA - CB ANGL. DEV. = -29.4 DEGREES REMARK 500 ASP A 111 CA - CB - CG ANGL. DEV. = 23.2 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 LYS A 129 CB - CG - CD ANGL. DEV. = 17.9 DEGREES REMARK 500 ASP A 168 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 186 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 HIS A 243 CB - CG - CD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP A 283 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 57 -42.12 70.53 REMARK 500 ASN A 108 -144.19 -168.49 REMARK 500 HIS A 243 36.17 74.87 REMARK 500 TYR A 247 -19.51 -140.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 68 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 103A -33.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 337 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LDG RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND OXAMATE REMARK 900 RELATED ID: 1T24 RELATED DB: PDB REMARK 900 PFLDH WITH NAD+ AND 4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID REMARK 900 RELATED ID: 1T25 RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND 3-HYDROXYISOXAZOLE-4-CARBOXYLIC ACID REMARK 900 RELATED ID: 1T26 RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND 4-HYDROXY-1,2,5-THIADIAZOLE-3-CARBOXYLIC ACID REMARK 900 RELATED ID: 1T2E RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND OXAMATE REMARK 900 RELATED ID: 1T2F RELATED DB: PDB REMARK 900 HUMANLDH WITH NAD+ AND 4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID DBREF 1T2C A 17 329 UNP Q27743 LDH1_PLAFD 1 316 SEQADV 1T2C HIS A 330 UNP Q27743 EXPRESSION TAG SEQADV 1T2C HIS A 331 UNP Q27743 EXPRESSION TAG SEQADV 1T2C HIS A 332 UNP Q27743 EXPRESSION TAG SEQADV 1T2C HIS A 333 UNP Q27743 EXPRESSION TAG SEQADV 1T2C HIS A 334 UNP Q27743 EXPRESSION TAG SEQADV 1T2C HIS A 335 UNP Q27743 EXPRESSION TAG SEQRES 1 A 322 MET ALA PRO LYS ALA LYS ILE VAL LEU VAL GLY SER GLY SEQRES 2 A 322 MET ILE GLY GLY VAL MET ALA THR LEU ILE VAL GLN LYS SEQRES 3 A 322 ASN LEU GLY ASP VAL VAL LEU PHE ASP ILE VAL LYS ASN SEQRES 4 A 322 MET PRO HIS GLY LYS ALA LEU ASP THR SER HIS THR ASN SEQRES 5 A 322 VAL MET ALA TYR SER ASN CYS LYS VAL SER GLY SER ASN SEQRES 6 A 322 THR TYR ASP ASP LEU ALA GLY ALA ASP VAL VAL ILE VAL SEQRES 7 A 322 THR ALA GLY PHE THR LYS ALA PRO GLY LYS SER ASP LYS SEQRES 8 A 322 GLU TRP ASN ARG ASP ASP LEU LEU PRO LEU ASN ASN LYS SEQRES 9 A 322 ILE MET ILE GLU ILE GLY GLY HIS ILE LYS LYS ASN CYS SEQRES 10 A 322 PRO ASN ALA PHE ILE ILE VAL VAL THR ASN PRO VAL ASP SEQRES 11 A 322 VAL MET VAL GLN LEU LEU HIS GLN HIS SER GLY VAL PRO SEQRES 12 A 322 LYS ASN LYS ILE ILE GLY LEU GLY GLY VAL LEU ASP THR SEQRES 13 A 322 SER ARG LEU LYS TYR TYR ILE SER GLN LYS LEU ASN VAL SEQRES 14 A 322 CYS PRO ARG ASP VAL ASN ALA HIS ILE VAL GLY ALA HIS SEQRES 15 A 322 GLY ASN LYS MET VAL LEU LEU LYS ARG TYR ILE THR VAL SEQRES 16 A 322 GLY GLY ILE PRO LEU GLN GLU PHE ILE ASN ASN LYS LEU SEQRES 17 A 322 ILE SER ASP ALA GLU LEU GLU ALA ILE PHE ASP ARG THR SEQRES 18 A 322 VAL ASN THR ALA LEU GLU ILE VAL ASN LEU HIS ALA SER SEQRES 19 A 322 PRO TYR VAL ALA PRO ALA ALA ALA ILE ILE GLU MET ALA SEQRES 20 A 322 GLU SER TYR LEU LYS ASP LEU LYS LYS VAL LEU ILE CYS SEQRES 21 A 322 SER THR LEU LEU GLU GLY GLN TYR GLY HIS SER ASP ILE SEQRES 22 A 322 PHE GLY GLY THR PRO VAL VAL LEU GLY ALA ASN GLY VAL SEQRES 23 A 322 GLU GLN VAL ILE GLU LEU GLN LEU ASN SER GLU GLU LYS SEQRES 24 A 322 ALA LYS PHE ASP GLU ALA ILE ALA GLU THR LYS ARG MET SEQRES 25 A 322 LYS ALA LEU ALA HIS HIS HIS HIS HIS HIS HET NAI A 336 44 HET GOL A 337 6 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETSYN NAI NADH HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *225(H2 O) HELIX 1 1 GLY A 29 ASN A 44 1 15 HELIX 2 2 ASN A 57 HIS A 68 1 12 HELIX 3 3 HIS A 68 TYR A 73B 1 7 HELIX 4 4 THR A 84 ALA A 89 5 6 HELIX 5 5 SER A 103E TRP A 107 5 5 HELIX 6 6 ASP A 111 CYS A 131 1 21 HELIX 7 7 PRO A 141 GLY A 154 1 14 HELIX 8 8 PRO A 156 ASN A 158 5 3 HELIX 9 9 GLY A 164 ASN A 181 1 18 HELIX 10 10 CYS A 183 ARG A 185 5 3 HELIX 11 11 LYS A 203 TYR A 205 5 3 HELIX 12 12 LEU A 210A ASN A 215 1 7 HELIX 13 13 SER A 220 ASN A 234 1 14 HELIX 14 14 ASN A 234 ASN A 241 1 8 HELIX 15 15 TYR A 247 LYS A 263 1 17 HELIX 16 16 GLN A 278 GLY A 280 5 3 HELIX 17 17 ASN A 308 ALA A 329 1 22 SHEET 1 A 6 VAL A 78 SER A 81 0 SHEET 2 A 6 ASP A 47 PHE A 52 1 N LEU A 51 O SER A 79 SHEET 3 A 6 LYS A 22 VAL A 26 1 N LEU A 25 O VAL A 50 SHEET 4 A 6 VAL A 93 VAL A 96 1 O ILE A 95 N VAL A 24 SHEET 5 A 6 PHE A 134 VAL A 137 1 O ILE A 136 N VAL A 96 SHEET 6 A 6 ILE A 160 GLY A 162 1 O ILE A 161 N VAL A 137 SHEET 1 B 3 VAL A 187 ASN A 188 0 SHEET 2 B 3 THR A 207 VAL A 208 -1 O THR A 207 N ASN A 188 SHEET 3 B 3 ILE A 209C PRO A 209D-1 O ILE A 209C N VAL A 208 SHEET 1 C 2 ILE A 191 VAL A 192 0 SHEET 2 C 2 VAL A 200 LEU A 201 -1 O VAL A 200 N VAL A 192 SHEET 1 D 3 LYS A 267 GLU A 276 0 SHEET 2 D 3 SER A 282 GLY A 294 -1 O ILE A 285 N LEU A 275 SHEET 3 D 3 GLY A 297 VAL A 302 -1 O GLU A 299 N VAL A 292 CISPEP 1 ASN A 140 PRO A 141 0 -5.75 SITE 1 AC1 26 GLY A 29 MET A 30 ILE A 31 PHE A 52 SITE 2 AC1 26 ASP A 53 ILE A 54 VAL A 55 TYR A 85 SITE 3 AC1 26 THR A 97 ALA A 98 GLY A 99 PHE A 100 SITE 4 AC1 26 VAL A 138 THR A 139 ASN A 140 VAL A 142 SITE 5 AC1 26 LEU A 163 LEU A 167 HIS A 195 HOH A 348 SITE 6 AC1 26 HOH A 349 HOH A 350 HOH A 351 HOH A 371 SITE 7 AC1 26 HOH A 542 HOH A 562 SITE 1 AC2 9 THR A 169 LYS A 173 ASN A 188 ALA A 189 SITE 2 AC2 9 GLY A 209A VAL A 268 HOH A 424 HOH A 429 SITE 3 AC2 9 HOH A 440 CRYST1 81.136 87.124 92.212 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012325 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010845 0.00000