data_1T38 # _entry.id 1T38 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1T38 pdb_00001t38 10.2210/pdb1t38/pdb NDB PD0541 ? ? RCSB RCSB022255 ? ? WWPDB D_1000022255 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EH6 'Native Human AGT' unspecified PDB 1EH7 'Methylated Human AGT' unspecified PDB 1EH8 'Benzylated Human AGT' unspecified PDB 1T39 'HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1T38 _pdbx_database_status.recvd_initial_deposition_date 2004-04-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Daniels, D.S.' 1 'Woo, T.T.' 2 'Luu, K.X.' 3 'Noll, D.M.' 4 'Clarke, N.D.' 5 'Pegg, A.E.' 6 'Tainer, J.A.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'DNA binding and nucleotide flipping by the human DNA repair protein AGT.' Nat.Struct.Mol.Biol. 11 714 720 2004 ? US 1545-9993 ? ? 15221026 10.1038/nsmb791 1 'Active and alkylated human AGT structures: a novel zinc site, inhibitor and extrahelical base binding' 'Embo J.' 19 1719 1730 2000 EMJODG UK 0261-4189 0897 ? ? 10.1093/emboj/19.7.1719 2 'Conserved structural motifs governing the stoichiometric repair of alkylated DNA by O(6)-alkylguanine-DNA alkyltransferase' Mutat.Res. 460 151 163 2000 ? NE 0027-5107 ? ? ? '10.1016/S0921-8777(00)00024-0' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Daniels, D.S.' 1 ? primary 'Woo, T.T.' 2 ? primary 'Luu, K.X.' 3 ? primary 'Noll, D.M.' 4 ? primary 'Clarke, N.D.' 5 ? primary 'Pegg, A.E.' 6 ? primary 'Tainer, J.A.' 7 ? 1 'Daniels, D.S.' 8 ? 1 'Mol, C.D.' 9 ? 1 'Arvai, A.S.' 10 ? 1 'Kanugula, S.' 11 ? 1 'Pegg, A.E.' 12 ? 1 'Tainer, J.A.' 13 ? 2 'Daniels, D.S.' 14 ? 2 'Tainer, J.A.' 15 ? # _cell.entry_id 1T38 _cell.length_a 115.698 _cell.length_b 115.698 _cell.length_c 106.775 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T38 _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3'" 4005.637 1 ? ? ? ? 2 polymer syn "5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3'" 3951.586 1 ? ? ? ? 3 polymer man 'Methylated-DNA--protein-cysteine methyltransferase' 20339.408 1 2.1.1.63 C145S ? ? 4 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name '6-O-methylguanine-DNA methyltransferase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DT)(DG)(6OG)(DC)(DT)(DA)(DG)(DT)(DA)' GCCATGGCTAGTA B ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DC)(DT)(DA)(DG)(DC)(DC)(DA)(DT)(DG)(DG)(DC)' TACTAGCCATGGC C ? 3 'polypeptide(L)' no no ;MRGSHHHHHHGSMDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNA YFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPSHRV VCSSGAVGNYSGGLAVKEWLLAHEGHRL ; ;MRGSHHHHHHGSMDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNA YFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPSHRV VCSSGAVGNYSGGLAVKEWLLAHEGHRL ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DC n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 6OG n 1 8 DC n 1 9 DT n 1 10 DA n 1 11 DG n 1 12 DT n 1 13 DA n 2 1 DT n 2 2 DA n 2 3 DC n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DC n 2 8 DC n 2 9 DA n 2 10 DT n 2 11 DG n 2 12 DG n 2 13 DC n 3 1 MET n 3 2 ARG n 3 3 GLY n 3 4 SER n 3 5 HIS n 3 6 HIS n 3 7 HIS n 3 8 HIS n 3 9 HIS n 3 10 HIS n 3 11 GLY n 3 12 SER n 3 13 MET n 3 14 ASP n 3 15 LYS n 3 16 ASP n 3 17 CYS n 3 18 GLU n 3 19 MET n 3 20 LYS n 3 21 ARG n 3 22 THR n 3 23 THR n 3 24 LEU n 3 25 ASP n 3 26 SER n 3 27 PRO n 3 28 LEU n 3 29 GLY n 3 30 LYS n 3 31 LEU n 3 32 GLU n 3 33 LEU n 3 34 SER n 3 35 GLY n 3 36 CYS n 3 37 GLU n 3 38 GLN n 3 39 GLY n 3 40 LEU n 3 41 HIS n 3 42 GLU n 3 43 ILE n 3 44 LYS n 3 45 LEU n 3 46 LEU n 3 47 GLY n 3 48 LYS n 3 49 GLY n 3 50 THR n 3 51 SER n 3 52 ALA n 3 53 ALA n 3 54 ASP n 3 55 ALA n 3 56 VAL n 3 57 GLU n 3 58 VAL n 3 59 PRO n 3 60 ALA n 3 61 PRO n 3 62 ALA n 3 63 ALA n 3 64 VAL n 3 65 LEU n 3 66 GLY n 3 67 GLY n 3 68 PRO n 3 69 GLU n 3 70 PRO n 3 71 LEU n 3 72 MET n 3 73 GLN n 3 74 CYS n 3 75 THR n 3 76 ALA n 3 77 TRP n 3 78 LEU n 3 79 ASN n 3 80 ALA n 3 81 TYR n 3 82 PHE n 3 83 HIS n 3 84 GLN n 3 85 PRO n 3 86 GLU n 3 87 ALA n 3 88 ILE n 3 89 GLU n 3 90 GLU n 3 91 PHE n 3 92 PRO n 3 93 VAL n 3 94 PRO n 3 95 ALA n 3 96 LEU n 3 97 HIS n 3 98 HIS n 3 99 PRO n 3 100 VAL n 3 101 PHE n 3 102 GLN n 3 103 GLN n 3 104 GLU n 3 105 SER n 3 106 PHE n 3 107 THR n 3 108 ARG n 3 109 GLN n 3 110 VAL n 3 111 LEU n 3 112 TRP n 3 113 LYS n 3 114 LEU n 3 115 LEU n 3 116 LYS n 3 117 VAL n 3 118 VAL n 3 119 LYS n 3 120 PHE n 3 121 GLY n 3 122 GLU n 3 123 VAL n 3 124 ILE n 3 125 SER n 3 126 TYR n 3 127 GLN n 3 128 GLN n 3 129 LEU n 3 130 ALA n 3 131 ALA n 3 132 LEU n 3 133 ALA n 3 134 GLY n 3 135 ASN n 3 136 PRO n 3 137 LYS n 3 138 ALA n 3 139 ALA n 3 140 ARG n 3 141 ALA n 3 142 VAL n 3 143 GLY n 3 144 GLY n 3 145 ALA n 3 146 MET n 3 147 ARG n 3 148 GLY n 3 149 ASN n 3 150 PRO n 3 151 VAL n 3 152 PRO n 3 153 ILE n 3 154 LEU n 3 155 ILE n 3 156 PRO n 3 157 SER n 3 158 HIS n 3 159 ARG n 3 160 VAL n 3 161 VAL n 3 162 CYS n 3 163 SER n 3 164 SER n 3 165 GLY n 3 166 ALA n 3 167 VAL n 3 168 GLY n 3 169 ASN n 3 170 TYR n 3 171 SER n 3 172 GLY n 3 173 GLY n 3 174 LEU n 3 175 ALA n 3 176 VAL n 3 177 LYS n 3 178 GLU n 3 179 TRP n 3 180 LEU n 3 181 LEU n 3 182 ALA n 3 183 HIS n 3 184 GLU n 3 185 GLY n 3 186 HIS n 3 187 ARG n 3 188 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene MGMT _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM109 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MGMT_HUMAN P16455 3 ;MDKDCEMKRTTLDSPLGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFP VPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSG GLAVKEWLLAHEGHRL ; 1 ? 2 PDB 1T38 1T38 1 ? ? ? 3 PDB 1T38 1T38 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1T38 A 13 ? 188 ? P16455 1 ? 176 ? 1 176 2 2 1T38 B 1 ? 13 ? 1T38 1 ? 13 ? 1 13 3 3 1T38 C 1 ? 13 ? 1T38 14 ? 26 ? 14 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1T38 MET A 1 ? UNP P16455 ? ? 'expression tag' -11 1 1 1T38 ARG A 2 ? UNP P16455 ? ? 'expression tag' -10 2 1 1T38 GLY A 3 ? UNP P16455 ? ? 'expression tag' -9 3 1 1T38 SER A 4 ? UNP P16455 ? ? 'expression tag' -8 4 1 1T38 HIS A 5 ? UNP P16455 ? ? 'expression tag' -7 5 1 1T38 HIS A 6 ? UNP P16455 ? ? 'expression tag' -6 6 1 1T38 HIS A 7 ? UNP P16455 ? ? 'expression tag' -5 7 1 1T38 HIS A 8 ? UNP P16455 ? ? 'expression tag' -4 8 1 1T38 HIS A 9 ? UNP P16455 ? ? 'expression tag' -3 9 1 1T38 HIS A 10 ? UNP P16455 ? ? 'expression tag' -2 10 1 1T38 GLY A 11 ? UNP P16455 ? ? 'expression tag' -1 11 1 1T38 SER A 12 ? UNP P16455 ? ? 'expression tag' 0 12 1 1T38 SER A 157 ? UNP P16455 CYS 145 'engineered mutation' 145 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6OG 'DNA linking' n ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; ? 'C11 H16 N5 O7 P' 361.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1T38 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 61.1 _exptl_crystal.description ? _exptl_crystal.density_Matthews 3.17 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG 3000, Tris, sodium chloride, xylitol, calcium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 3000' ? ? ? 1 2 1 Tris ? ? ? 1 3 1 'sodium chloride' ? ? ? 1 4 1 xylitol ? ? ? 1 5 1 'calcium acetate' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 'PEG 3000' ? ? ? 1 8 2 'sodium chloride' ? ? ? 1 9 2 'calcium acetate' ? ? ? 1 10 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 1T38 _reflns.number_all ? _reflns.number_obs 6205 _reflns.percent_possible_obs ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 3.2 _reflns.d_resolution_low 46 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1T38 _refine.ls_number_reflns_obs 6201 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 4747888.28 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF 4747888.28 _refine.ls_d_res_low 29.32 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.261 _refine.ls_R_factor_all 0.263 _refine.ls_R_factor_R_work 0.261 _refine.ls_R_factor_R_free 0.307 _refine.ls_R_factor_R_free_error 0.017 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.5 _refine.ls_number_reflns_R_free 343 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.206121 _refine.solvent_model_param_bsol 39.5433 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1EH6' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model GROUP _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1T38 _refine_analyze.Luzzati_coordinate_error_obs 0.45 _refine_analyze.Luzzati_sigma_a_obs 0.71 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.61 _refine_analyze.Luzzati_sigma_a_free 1.01 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1167 _refine_hist.pdbx_number_atoms_nucleic_acid 528 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 1697 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 29.32 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.19 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work 974 _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 WATER.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1T38 _struct.title 'HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE BOUND TO DNA CONTAINING O6-METHYLGUANINE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1T38 _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'ALKYLTRANSFERASE, METHYLTRANSFERASE, DNA REPAIR, HELIX-TURN-HELIX, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO C 68 ? GLN C 84 ? PRO A 56 GLN A 72 1 ? 17 HELX_P HELX_P2 2 PRO C 85 ? ILE C 88 ? PRO A 73 ILE A 76 5 ? 4 HELX_P HELX_P3 3 SER C 105 ? VAL C 118 ? SER A 93 VAL A 106 1 ? 14 HELX_P HELX_P4 4 TYR C 126 ? GLY C 134 ? TYR A 114 GLY A 122 1 ? 9 HELX_P HELX_P5 5 ALA C 138 ? ASN C 149 ? ALA A 126 ASN A 137 1 ? 12 HELX_P HELX_P6 6 LEU C 174 ? GLU C 184 ? LEU A 162 GLU A 172 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A 6OG 7 P ? ? B DG 6 B 6OG 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale2 covale one ? A 6OG 7 "O3'" ? ? ? 1_555 A DC 8 P ? ? B 6OG 7 B DC 8 1_555 ? ? ? ? ? ? ? 1.590 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 13 N3 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 13 O2 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 13 N4 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 10 N3 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 10 O4 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DC 8 N4 ? ? B DT 5 C DC 21 1_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog13 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 5 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 5 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 10 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 10 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 3 N3 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 3 O2 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 3 N4 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 12 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 12 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 1 N3 ? ? B DA 13 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 1 O4 ? ? B DA 13 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS C 20 ? LEU C 24 ? LYS A 8 LEU A 12 A 2 LEU C 31 ? CYS C 36 ? LEU A 19 CYS A 24 A 3 GLY C 39 ? LEU C 45 ? GLY A 27 LEU A 33 B 1 ILE C 124 ? SER C 125 ? ILE A 112 SER A 113 B 2 VAL C 160 ? VAL C 161 ? VAL A 148 VAL A 149 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU C 24 ? N LEU A 12 O LEU C 31 ? O LEU A 19 A 2 3 N GLU C 32 ? N GLU A 20 O LYS C 44 ? O LYS A 32 B 1 2 N ILE C 124 ? N ILE A 112 O VAL C 161 ? O VAL A 149 # _database_PDB_matrix.entry_id 1T38 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1T38 _atom_sites.fract_transf_matrix[1][1] 0.008643 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008643 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009365 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G B . n A 1 2 DC 2 2 2 DC C B . n A 1 3 DC 3 3 3 DC C B . n A 1 4 DA 4 4 4 DA A B . n A 1 5 DT 5 5 5 DT T B . n A 1 6 DG 6 6 6 DG G B . n A 1 7 6OG 7 7 7 6OG +G B . n A 1 8 DC 8 8 8 DC C B . n A 1 9 DT 9 9 9 DT T B . n A 1 10 DA 10 10 10 DA A B . n A 1 11 DG 11 11 11 DG G B . n A 1 12 DT 12 12 12 DT T B . n A 1 13 DA 13 13 13 DA A B . n B 2 1 DT 1 14 14 DT T C . n B 2 2 DA 2 15 15 DA A C . n B 2 3 DC 3 16 16 DC C C . n B 2 4 DT 4 17 17 DT T C . n B 2 5 DA 5 18 18 DA A C . n B 2 6 DG 6 19 19 DG G C . n B 2 7 DC 7 20 20 DC C C . n B 2 8 DC 8 21 21 DC C C . n B 2 9 DA 9 22 22 DA A C . n B 2 10 DT 10 23 23 DT T C . n B 2 11 DG 11 24 24 DG G C . n B 2 12 DG 12 25 25 DG G C . n B 2 13 DC 13 26 26 DC C C . n C 3 1 MET 1 -11 ? ? ? A . n C 3 2 ARG 2 -10 ? ? ? A . n C 3 3 GLY 3 -9 ? ? ? A . n C 3 4 SER 4 -8 ? ? ? A . n C 3 5 HIS 5 -7 ? ? ? A . n C 3 6 HIS 6 -6 ? ? ? A . n C 3 7 HIS 7 -5 ? ? ? A . n C 3 8 HIS 8 -4 ? ? ? A . n C 3 9 HIS 9 -3 ? ? ? A . n C 3 10 HIS 10 -2 ? ? ? A . n C 3 11 GLY 11 -1 ? ? ? A . n C 3 12 SER 12 0 ? ? ? A . n C 3 13 MET 13 1 ? ? ? A . n C 3 14 ASP 14 2 ? ? ? A . n C 3 15 LYS 15 3 ? ? ? A . n C 3 16 ASP 16 4 ? ? ? A . n C 3 17 CYS 17 5 ? ? ? A . n C 3 18 GLU 18 6 6 GLU GLU A . n C 3 19 MET 19 7 7 MET MET A . n C 3 20 LYS 20 8 8 LYS LYS A . n C 3 21 ARG 21 9 9 ARG ARG A . n C 3 22 THR 22 10 10 THR THR A . n C 3 23 THR 23 11 11 THR THR A . n C 3 24 LEU 24 12 12 LEU LEU A . n C 3 25 ASP 25 13 13 ASP ASP A . n C 3 26 SER 26 14 14 SER SER A . n C 3 27 PRO 27 15 15 PRO PRO A . n C 3 28 LEU 28 16 16 LEU LEU A . n C 3 29 GLY 29 17 17 GLY GLY A . n C 3 30 LYS 30 18 18 LYS LYS A . n C 3 31 LEU 31 19 19 LEU LEU A . n C 3 32 GLU 32 20 20 GLU GLU A . n C 3 33 LEU 33 21 21 LEU LEU A . n C 3 34 SER 34 22 22 SER SER A . n C 3 35 GLY 35 23 23 GLY GLY A . n C 3 36 CYS 36 24 24 CYS CYS A . n C 3 37 GLU 37 25 25 GLU GLU A . n C 3 38 GLN 38 26 26 GLN GLN A . n C 3 39 GLY 39 27 27 GLY GLY A . n C 3 40 LEU 40 28 28 LEU LEU A . n C 3 41 HIS 41 29 29 HIS HIS A . n C 3 42 GLU 42 30 30 GLU GLU A . n C 3 43 ILE 43 31 31 ILE ILE A . n C 3 44 LYS 44 32 32 LYS LYS A . n C 3 45 LEU 45 33 33 LEU LEU A . n C 3 46 LEU 46 34 34 LEU LEU A . n C 3 47 GLY 47 35 35 GLY GLY A . n C 3 48 LYS 48 36 ? ? ? A . n C 3 49 GLY 49 37 ? ? ? A . n C 3 50 THR 50 38 ? ? ? A . n C 3 51 SER 51 39 ? ? ? A . n C 3 52 ALA 52 40 ? ? ? A . n C 3 53 ALA 53 41 ? ? ? A . n C 3 54 ASP 54 42 ? ? ? A . n C 3 55 ALA 55 43 ? ? ? A . n C 3 56 VAL 56 44 ? ? ? A . n C 3 57 GLU 57 45 ? ? ? A . n C 3 58 VAL 58 46 ? ? ? A . n C 3 59 PRO 59 47 ? ? ? A . n C 3 60 ALA 60 48 ? ? ? A . n C 3 61 PRO 61 49 ? ? ? A . n C 3 62 ALA 62 50 ? ? ? A . n C 3 63 ALA 63 51 ? ? ? A . n C 3 64 VAL 64 52 ? ? ? A . n C 3 65 LEU 65 53 ? ? ? A . n C 3 66 GLY 66 54 ? ? ? A . n C 3 67 GLY 67 55 ? ? ? A . n C 3 68 PRO 68 56 56 PRO PRO A . n C 3 69 GLU 69 57 57 GLU GLU A . n C 3 70 PRO 70 58 58 PRO PRO A . n C 3 71 LEU 71 59 59 LEU LEU A . n C 3 72 MET 72 60 60 MET MET A . n C 3 73 GLN 73 61 61 GLN GLN A . n C 3 74 CYS 74 62 62 CYS CYS A . n C 3 75 THR 75 63 63 THR THR A . n C 3 76 ALA 76 64 64 ALA ALA A . n C 3 77 TRP 77 65 65 TRP TRP A . n C 3 78 LEU 78 66 66 LEU LEU A . n C 3 79 ASN 79 67 67 ASN ASN A . n C 3 80 ALA 80 68 68 ALA ALA A . n C 3 81 TYR 81 69 69 TYR TYR A . n C 3 82 PHE 82 70 70 PHE PHE A . n C 3 83 HIS 83 71 71 HIS HIS A . n C 3 84 GLN 84 72 72 GLN GLN A . n C 3 85 PRO 85 73 73 PRO PRO A . n C 3 86 GLU 86 74 74 GLU GLU A . n C 3 87 ALA 87 75 75 ALA ALA A . n C 3 88 ILE 88 76 76 ILE ILE A . n C 3 89 GLU 89 77 77 GLU GLU A . n C 3 90 GLU 90 78 78 GLU GLU A . n C 3 91 PHE 91 79 79 PHE PHE A . n C 3 92 PRO 92 80 80 PRO PRO A . n C 3 93 VAL 93 81 81 VAL VAL A . n C 3 94 PRO 94 82 82 PRO PRO A . n C 3 95 ALA 95 83 83 ALA ALA A . n C 3 96 LEU 96 84 84 LEU LEU A . n C 3 97 HIS 97 85 85 HIS HIS A . n C 3 98 HIS 98 86 86 HIS HIS A . n C 3 99 PRO 99 87 87 PRO PRO A . n C 3 100 VAL 100 88 88 VAL VAL A . n C 3 101 PHE 101 89 89 PHE PHE A . n C 3 102 GLN 102 90 90 GLN GLN A . n C 3 103 GLN 103 91 91 GLN GLN A . n C 3 104 GLU 104 92 92 GLU GLU A . n C 3 105 SER 105 93 93 SER SER A . n C 3 106 PHE 106 94 94 PHE PHE A . n C 3 107 THR 107 95 95 THR THR A . n C 3 108 ARG 108 96 96 ARG ARG A . n C 3 109 GLN 109 97 97 GLN GLN A . n C 3 110 VAL 110 98 98 VAL VAL A . n C 3 111 LEU 111 99 99 LEU LEU A . n C 3 112 TRP 112 100 100 TRP TRP A . n C 3 113 LYS 113 101 101 LYS LYS A . n C 3 114 LEU 114 102 102 LEU LEU A . n C 3 115 LEU 115 103 103 LEU LEU A . n C 3 116 LYS 116 104 104 LYS LYS A . n C 3 117 VAL 117 105 105 VAL VAL A . n C 3 118 VAL 118 106 106 VAL VAL A . n C 3 119 LYS 119 107 107 LYS LYS A . n C 3 120 PHE 120 108 108 PHE PHE A . n C 3 121 GLY 121 109 109 GLY GLY A . n C 3 122 GLU 122 110 110 GLU GLU A . n C 3 123 VAL 123 111 111 VAL VAL A . n C 3 124 ILE 124 112 112 ILE ILE A . n C 3 125 SER 125 113 113 SER SER A . n C 3 126 TYR 126 114 114 TYR TYR A . n C 3 127 GLN 127 115 115 GLN GLN A . n C 3 128 GLN 128 116 116 GLN GLN A . n C 3 129 LEU 129 117 117 LEU LEU A . n C 3 130 ALA 130 118 118 ALA ALA A . n C 3 131 ALA 131 119 119 ALA ALA A . n C 3 132 LEU 132 120 120 LEU LEU A . n C 3 133 ALA 133 121 121 ALA ALA A . n C 3 134 GLY 134 122 122 GLY GLY A . n C 3 135 ASN 135 123 123 ASN ASN A . n C 3 136 PRO 136 124 124 PRO PRO A . n C 3 137 LYS 137 125 125 LYS LYS A . n C 3 138 ALA 138 126 126 ALA ALA A . n C 3 139 ALA 139 127 127 ALA ALA A . n C 3 140 ARG 140 128 128 ARG ARG A . n C 3 141 ALA 141 129 129 ALA ALA A . n C 3 142 VAL 142 130 130 VAL VAL A . n C 3 143 GLY 143 131 131 GLY GLY A . n C 3 144 GLY 144 132 132 GLY GLY A . n C 3 145 ALA 145 133 133 ALA ALA A . n C 3 146 MET 146 134 134 MET MET A . n C 3 147 ARG 147 135 135 ARG ARG A . n C 3 148 GLY 148 136 136 GLY GLY A . n C 3 149 ASN 149 137 137 ASN ASN A . n C 3 150 PRO 150 138 138 PRO PRO A . n C 3 151 VAL 151 139 139 VAL VAL A . n C 3 152 PRO 152 140 140 PRO PRO A . n C 3 153 ILE 153 141 141 ILE ILE A . n C 3 154 LEU 154 142 142 LEU LEU A . n C 3 155 ILE 155 143 143 ILE ILE A . n C 3 156 PRO 156 144 144 PRO PRO A . n C 3 157 SER 157 145 145 SER SER A . n C 3 158 HIS 158 146 146 HIS HIS A . n C 3 159 ARG 159 147 147 ARG ARG A . n C 3 160 VAL 160 148 148 VAL VAL A . n C 3 161 VAL 161 149 149 VAL VAL A . n C 3 162 CYS 162 150 150 CYS CYS A . n C 3 163 SER 163 151 151 SER SER A . n C 3 164 SER 164 152 152 SER SER A . n C 3 165 GLY 165 153 153 GLY GLY A . n C 3 166 ALA 166 154 154 ALA ALA A . n C 3 167 VAL 167 155 155 VAL VAL A . n C 3 168 GLY 168 156 156 GLY GLY A . n C 3 169 ASN 169 157 157 ASN ASN A . n C 3 170 TYR 170 158 158 TYR TYR A . n C 3 171 SER 171 159 159 SER SER A . n C 3 172 GLY 172 160 160 GLY GLY A . n C 3 173 GLY 173 161 161 GLY GLY A . n C 3 174 LEU 174 162 162 LEU LEU A . n C 3 175 ALA 175 163 163 ALA ALA A . n C 3 176 VAL 176 164 164 VAL VAL A . n C 3 177 LYS 177 165 165 LYS LYS A . n C 3 178 GLU 178 166 166 GLU GLU A . n C 3 179 TRP 179 167 167 TRP TRP A . n C 3 180 LEU 180 168 168 LEU LEU A . n C 3 181 LEU 181 169 169 LEU LEU A . n C 3 182 ALA 182 170 170 ALA ALA A . n C 3 183 HIS 183 171 171 HIS HIS A . n C 3 184 GLU 184 172 172 GLU GLU A . n C 3 185 GLY 185 173 173 GLY GLY A . n C 3 186 HIS 186 174 174 HIS HIS A . n C 3 187 ARG 187 175 175 ARG ARG A . n C 3 188 LEU 188 176 176 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 177 1 HOH HOH A . D 4 HOH 2 178 2 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 6OG _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 6OG _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-07-13 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(SCALA)' ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 18 ? ? -48.64 107.20 2 1 GLN A 72 ? ? -167.66 55.00 3 1 HIS A 86 ? ? -32.01 138.96 4 1 PRO A 87 ? ? -54.71 1.78 5 1 PHE A 108 ? ? -22.61 114.72 6 1 ALA A 126 ? ? -72.15 37.41 7 1 ILE A 141 ? ? 85.45 -67.12 8 1 PRO A 144 ? ? -55.02 97.20 9 1 SER A 152 ? ? -67.53 4.08 10 1 SER A 159 ? ? -36.18 -73.26 11 1 LEU A 162 ? ? -32.15 -31.15 12 1 GLU A 172 ? ? -81.43 37.69 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? C MET 1 2 1 Y 1 A ARG -10 ? C ARG 2 3 1 Y 1 A GLY -9 ? C GLY 3 4 1 Y 1 A SER -8 ? C SER 4 5 1 Y 1 A HIS -7 ? C HIS 5 6 1 Y 1 A HIS -6 ? C HIS 6 7 1 Y 1 A HIS -5 ? C HIS 7 8 1 Y 1 A HIS -4 ? C HIS 8 9 1 Y 1 A HIS -3 ? C HIS 9 10 1 Y 1 A HIS -2 ? C HIS 10 11 1 Y 1 A GLY -1 ? C GLY 11 12 1 Y 1 A SER 0 ? C SER 12 13 1 Y 1 A MET 1 ? C MET 13 14 1 Y 1 A ASP 2 ? C ASP 14 15 1 Y 1 A LYS 3 ? C LYS 15 16 1 Y 1 A ASP 4 ? C ASP 16 17 1 Y 1 A CYS 5 ? C CYS 17 18 1 Y 1 A LYS 36 ? C LYS 48 19 1 Y 1 A GLY 37 ? C GLY 49 20 1 Y 1 A THR 38 ? C THR 50 21 1 Y 1 A SER 39 ? C SER 51 22 1 Y 1 A ALA 40 ? C ALA 52 23 1 Y 1 A ALA 41 ? C ALA 53 24 1 Y 1 A ASP 42 ? C ASP 54 25 1 Y 1 A ALA 43 ? C ALA 55 26 1 Y 1 A VAL 44 ? C VAL 56 27 1 Y 1 A GLU 45 ? C GLU 57 28 1 Y 1 A VAL 46 ? C VAL 58 29 1 Y 1 A PRO 47 ? C PRO 59 30 1 Y 1 A ALA 48 ? C ALA 60 31 1 Y 1 A PRO 49 ? C PRO 61 32 1 Y 1 A ALA 50 ? C ALA 62 33 1 Y 1 A ALA 51 ? C ALA 63 34 1 Y 1 A VAL 52 ? C VAL 64 35 1 Y 1 A LEU 53 ? C LEU 65 36 1 Y 1 A GLY 54 ? C GLY 66 37 1 Y 1 A GLY 55 ? C GLY 67 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6OG P P N N 1 6OG OP1 O N N 2 6OG OP2 O N N 3 6OG "O5'" O N N 4 6OG N9 N Y N 5 6OG C4 C Y N 6 6OG N3 N Y N 7 6OG C2 C Y N 8 6OG N2 N N N 9 6OG N1 N Y N 10 6OG C6 C Y N 11 6OG O6 O N N 12 6OG C5 C Y N 13 6OG N7 N Y N 14 6OG C8 C Y N 15 6OG "C2'" C N N 16 6OG "C5'" C N N 17 6OG "C4'" C N R 18 6OG "O4'" O N N 19 6OG "C1'" C N R 20 6OG "C3'" C N S 21 6OG "O3'" O N N 22 6OG C C N N 23 6OG HOP2 H N N 24 6OG HN21 H N N 25 6OG HN22 H N N 26 6OG H8 H N N 27 6OG "H2'" H N N 28 6OG "H2''" H N N 29 6OG "H5'" H N N 30 6OG "H5''" H N N 31 6OG "H4'" H N N 32 6OG "H1'" H N N 33 6OG "H3'" H N N 34 6OG "HO3'" H N N 35 6OG H1 H N N 36 6OG H2 H N N 37 6OG H3 H N N 38 6OG OP3 O N N 39 6OG HOP3 H N N 40 ALA N N N N 41 ALA CA C N S 42 ALA C C N N 43 ALA O O N N 44 ALA CB C N N 45 ALA OXT O N N 46 ALA H H N N 47 ALA H2 H N N 48 ALA HA H N N 49 ALA HB1 H N N 50 ALA HB2 H N N 51 ALA HB3 H N N 52 ALA HXT H N N 53 ARG N N N N 54 ARG CA C N S 55 ARG C C N N 56 ARG O O N N 57 ARG CB C N N 58 ARG CG C N N 59 ARG CD C N N 60 ARG NE N N N 61 ARG CZ C N N 62 ARG NH1 N N N 63 ARG NH2 N N N 64 ARG OXT O N N 65 ARG H H N N 66 ARG H2 H N N 67 ARG HA H N N 68 ARG HB2 H N N 69 ARG HB3 H N N 70 ARG HG2 H N N 71 ARG HG3 H N N 72 ARG HD2 H N N 73 ARG HD3 H N N 74 ARG HE H N N 75 ARG HH11 H N N 76 ARG HH12 H N N 77 ARG HH21 H N N 78 ARG HH22 H N N 79 ARG HXT H N N 80 ASN N N N N 81 ASN CA C N S 82 ASN C C N N 83 ASN O O N N 84 ASN CB C N N 85 ASN CG C N N 86 ASN OD1 O N N 87 ASN ND2 N N N 88 ASN OXT O N N 89 ASN H H N N 90 ASN H2 H N N 91 ASN HA H N N 92 ASN HB2 H N N 93 ASN HB3 H N N 94 ASN HD21 H N N 95 ASN HD22 H N N 96 ASN HXT H N N 97 ASP N N N N 98 ASP CA C N S 99 ASP C C N N 100 ASP O O N N 101 ASP CB C N N 102 ASP CG C N N 103 ASP OD1 O N N 104 ASP OD2 O N N 105 ASP OXT O N N 106 ASP H H N N 107 ASP H2 H N N 108 ASP HA H N N 109 ASP HB2 H N N 110 ASP HB3 H N N 111 ASP HD2 H N N 112 ASP HXT H N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 DA OP3 O N N 128 DA P P N N 129 DA OP1 O N N 130 DA OP2 O N N 131 DA "O5'" O N N 132 DA "C5'" C N N 133 DA "C4'" C N R 134 DA "O4'" O N N 135 DA "C3'" C N S 136 DA "O3'" O N N 137 DA "C2'" C N N 138 DA "C1'" C N R 139 DA N9 N Y N 140 DA C8 C Y N 141 DA N7 N Y N 142 DA C5 C Y N 143 DA C6 C Y N 144 DA N6 N N N 145 DA N1 N Y N 146 DA C2 C Y N 147 DA N3 N Y N 148 DA C4 C Y N 149 DA HOP3 H N N 150 DA HOP2 H N N 151 DA "H5'" H N N 152 DA "H5''" H N N 153 DA "H4'" H N N 154 DA "H3'" H N N 155 DA "HO3'" H N N 156 DA "H2'" H N N 157 DA "H2''" H N N 158 DA "H1'" H N N 159 DA H8 H N N 160 DA H61 H N N 161 DA H62 H N N 162 DA H2 H N N 163 DC OP3 O N N 164 DC P P N N 165 DC OP1 O N N 166 DC OP2 O N N 167 DC "O5'" O N N 168 DC "C5'" C N N 169 DC "C4'" C N R 170 DC "O4'" O N N 171 DC "C3'" C N S 172 DC "O3'" O N N 173 DC "C2'" C N N 174 DC "C1'" C N R 175 DC N1 N N N 176 DC C2 C N N 177 DC O2 O N N 178 DC N3 N N N 179 DC C4 C N N 180 DC N4 N N N 181 DC C5 C N N 182 DC C6 C N N 183 DC HOP3 H N N 184 DC HOP2 H N N 185 DC "H5'" H N N 186 DC "H5''" H N N 187 DC "H4'" H N N 188 DC "H3'" H N N 189 DC "HO3'" H N N 190 DC "H2'" H N N 191 DC "H2''" H N N 192 DC "H1'" H N N 193 DC H41 H N N 194 DC H42 H N N 195 DC H5 H N N 196 DC H6 H N N 197 DG OP3 O N N 198 DG P P N N 199 DG OP1 O N N 200 DG OP2 O N N 201 DG "O5'" O N N 202 DG "C5'" C N N 203 DG "C4'" C N R 204 DG "O4'" O N N 205 DG "C3'" C N S 206 DG "O3'" O N N 207 DG "C2'" C N N 208 DG "C1'" C N R 209 DG N9 N Y N 210 DG C8 C Y N 211 DG N7 N Y N 212 DG C5 C Y N 213 DG C6 C N N 214 DG O6 O N N 215 DG N1 N N N 216 DG C2 C N N 217 DG N2 N N N 218 DG N3 N N N 219 DG C4 C Y N 220 DG HOP3 H N N 221 DG HOP2 H N N 222 DG "H5'" H N N 223 DG "H5''" H N N 224 DG "H4'" H N N 225 DG "H3'" H N N 226 DG "HO3'" H N N 227 DG "H2'" H N N 228 DG "H2''" H N N 229 DG "H1'" H N N 230 DG H8 H N N 231 DG H1 H N N 232 DG H21 H N N 233 DG H22 H N N 234 DT OP3 O N N 235 DT P P N N 236 DT OP1 O N N 237 DT OP2 O N N 238 DT "O5'" O N N 239 DT "C5'" C N N 240 DT "C4'" C N R 241 DT "O4'" O N N 242 DT "C3'" C N S 243 DT "O3'" O N N 244 DT "C2'" C N N 245 DT "C1'" C N R 246 DT N1 N N N 247 DT C2 C N N 248 DT O2 O N N 249 DT N3 N N N 250 DT C4 C N N 251 DT O4 O N N 252 DT C5 C N N 253 DT C7 C N N 254 DT C6 C N N 255 DT HOP3 H N N 256 DT HOP2 H N N 257 DT "H5'" H N N 258 DT "H5''" H N N 259 DT "H4'" H N N 260 DT "H3'" H N N 261 DT "HO3'" H N N 262 DT "H2'" H N N 263 DT "H2''" H N N 264 DT "H1'" H N N 265 DT H3 H N N 266 DT H71 H N N 267 DT H72 H N N 268 DT H73 H N N 269 DT H6 H N N 270 GLN N N N N 271 GLN CA C N S 272 GLN C C N N 273 GLN O O N N 274 GLN CB C N N 275 GLN CG C N N 276 GLN CD C N N 277 GLN OE1 O N N 278 GLN NE2 N N N 279 GLN OXT O N N 280 GLN H H N N 281 GLN H2 H N N 282 GLN HA H N N 283 GLN HB2 H N N 284 GLN HB3 H N N 285 GLN HG2 H N N 286 GLN HG3 H N N 287 GLN HE21 H N N 288 GLN HE22 H N N 289 GLN HXT H N N 290 GLU N N N N 291 GLU CA C N S 292 GLU C C N N 293 GLU O O N N 294 GLU CB C N N 295 GLU CG C N N 296 GLU CD C N N 297 GLU OE1 O N N 298 GLU OE2 O N N 299 GLU OXT O N N 300 GLU H H N N 301 GLU H2 H N N 302 GLU HA H N N 303 GLU HB2 H N N 304 GLU HB3 H N N 305 GLU HG2 H N N 306 GLU HG3 H N N 307 GLU HE2 H N N 308 GLU HXT H N N 309 GLY N N N N 310 GLY CA C N N 311 GLY C C N N 312 GLY O O N N 313 GLY OXT O N N 314 GLY H H N N 315 GLY H2 H N N 316 GLY HA2 H N N 317 GLY HA3 H N N 318 GLY HXT H N N 319 HIS N N N N 320 HIS CA C N S 321 HIS C C N N 322 HIS O O N N 323 HIS CB C N N 324 HIS CG C Y N 325 HIS ND1 N Y N 326 HIS CD2 C Y N 327 HIS CE1 C Y N 328 HIS NE2 N Y N 329 HIS OXT O N N 330 HIS H H N N 331 HIS H2 H N N 332 HIS HA H N N 333 HIS HB2 H N N 334 HIS HB3 H N N 335 HIS HD1 H N N 336 HIS HD2 H N N 337 HIS HE1 H N N 338 HIS HE2 H N N 339 HIS HXT H N N 340 HOH O O N N 341 HOH H1 H N N 342 HOH H2 H N N 343 ILE N N N N 344 ILE CA C N S 345 ILE C C N N 346 ILE O O N N 347 ILE CB C N S 348 ILE CG1 C N N 349 ILE CG2 C N N 350 ILE CD1 C N N 351 ILE OXT O N N 352 ILE H H N N 353 ILE H2 H N N 354 ILE HA H N N 355 ILE HB H N N 356 ILE HG12 H N N 357 ILE HG13 H N N 358 ILE HG21 H N N 359 ILE HG22 H N N 360 ILE HG23 H N N 361 ILE HD11 H N N 362 ILE HD12 H N N 363 ILE HD13 H N N 364 ILE HXT H N N 365 LEU N N N N 366 LEU CA C N S 367 LEU C C N N 368 LEU O O N N 369 LEU CB C N N 370 LEU CG C N N 371 LEU CD1 C N N 372 LEU CD2 C N N 373 LEU OXT O N N 374 LEU H H N N 375 LEU H2 H N N 376 LEU HA H N N 377 LEU HB2 H N N 378 LEU HB3 H N N 379 LEU HG H N N 380 LEU HD11 H N N 381 LEU HD12 H N N 382 LEU HD13 H N N 383 LEU HD21 H N N 384 LEU HD22 H N N 385 LEU HD23 H N N 386 LEU HXT H N N 387 LYS N N N N 388 LYS CA C N S 389 LYS C C N N 390 LYS O O N N 391 LYS CB C N N 392 LYS CG C N N 393 LYS CD C N N 394 LYS CE C N N 395 LYS NZ N N N 396 LYS OXT O N N 397 LYS H H N N 398 LYS H2 H N N 399 LYS HA H N N 400 LYS HB2 H N N 401 LYS HB3 H N N 402 LYS HG2 H N N 403 LYS HG3 H N N 404 LYS HD2 H N N 405 LYS HD3 H N N 406 LYS HE2 H N N 407 LYS HE3 H N N 408 LYS HZ1 H N N 409 LYS HZ2 H N N 410 LYS HZ3 H N N 411 LYS HXT H N N 412 MET N N N N 413 MET CA C N S 414 MET C C N N 415 MET O O N N 416 MET CB C N N 417 MET CG C N N 418 MET SD S N N 419 MET CE C N N 420 MET OXT O N N 421 MET H H N N 422 MET H2 H N N 423 MET HA H N N 424 MET HB2 H N N 425 MET HB3 H N N 426 MET HG2 H N N 427 MET HG3 H N N 428 MET HE1 H N N 429 MET HE2 H N N 430 MET HE3 H N N 431 MET HXT H N N 432 PHE N N N N 433 PHE CA C N S 434 PHE C C N N 435 PHE O O N N 436 PHE CB C N N 437 PHE CG C Y N 438 PHE CD1 C Y N 439 PHE CD2 C Y N 440 PHE CE1 C Y N 441 PHE CE2 C Y N 442 PHE CZ C Y N 443 PHE OXT O N N 444 PHE H H N N 445 PHE H2 H N N 446 PHE HA H N N 447 PHE HB2 H N N 448 PHE HB3 H N N 449 PHE HD1 H N N 450 PHE HD2 H N N 451 PHE HE1 H N N 452 PHE HE2 H N N 453 PHE HZ H N N 454 PHE HXT H N N 455 PRO N N N N 456 PRO CA C N S 457 PRO C C N N 458 PRO O O N N 459 PRO CB C N N 460 PRO CG C N N 461 PRO CD C N N 462 PRO OXT O N N 463 PRO H H N N 464 PRO HA H N N 465 PRO HB2 H N N 466 PRO HB3 H N N 467 PRO HG2 H N N 468 PRO HG3 H N N 469 PRO HD2 H N N 470 PRO HD3 H N N 471 PRO HXT H N N 472 SER N N N N 473 SER CA C N S 474 SER C C N N 475 SER O O N N 476 SER CB C N N 477 SER OG O N N 478 SER OXT O N N 479 SER H H N N 480 SER H2 H N N 481 SER HA H N N 482 SER HB2 H N N 483 SER HB3 H N N 484 SER HG H N N 485 SER HXT H N N 486 THR N N N N 487 THR CA C N S 488 THR C C N N 489 THR O O N N 490 THR CB C N R 491 THR OG1 O N N 492 THR CG2 C N N 493 THR OXT O N N 494 THR H H N N 495 THR H2 H N N 496 THR HA H N N 497 THR HB H N N 498 THR HG1 H N N 499 THR HG21 H N N 500 THR HG22 H N N 501 THR HG23 H N N 502 THR HXT H N N 503 TRP N N N N 504 TRP CA C N S 505 TRP C C N N 506 TRP O O N N 507 TRP CB C N N 508 TRP CG C Y N 509 TRP CD1 C Y N 510 TRP CD2 C Y N 511 TRP NE1 N Y N 512 TRP CE2 C Y N 513 TRP CE3 C Y N 514 TRP CZ2 C Y N 515 TRP CZ3 C Y N 516 TRP CH2 C Y N 517 TRP OXT O N N 518 TRP H H N N 519 TRP H2 H N N 520 TRP HA H N N 521 TRP HB2 H N N 522 TRP HB3 H N N 523 TRP HD1 H N N 524 TRP HE1 H N N 525 TRP HE3 H N N 526 TRP HZ2 H N N 527 TRP HZ3 H N N 528 TRP HH2 H N N 529 TRP HXT H N N 530 TYR N N N N 531 TYR CA C N S 532 TYR C C N N 533 TYR O O N N 534 TYR CB C N N 535 TYR CG C Y N 536 TYR CD1 C Y N 537 TYR CD2 C Y N 538 TYR CE1 C Y N 539 TYR CE2 C Y N 540 TYR CZ C Y N 541 TYR OH O N N 542 TYR OXT O N N 543 TYR H H N N 544 TYR H2 H N N 545 TYR HA H N N 546 TYR HB2 H N N 547 TYR HB3 H N N 548 TYR HD1 H N N 549 TYR HD2 H N N 550 TYR HE1 H N N 551 TYR HE2 H N N 552 TYR HH H N N 553 TYR HXT H N N 554 VAL N N N N 555 VAL CA C N S 556 VAL C C N N 557 VAL O O N N 558 VAL CB C N N 559 VAL CG1 C N N 560 VAL CG2 C N N 561 VAL OXT O N N 562 VAL H H N N 563 VAL H2 H N N 564 VAL HA H N N 565 VAL HB H N N 566 VAL HG11 H N N 567 VAL HG12 H N N 568 VAL HG13 H N N 569 VAL HG21 H N N 570 VAL HG22 H N N 571 VAL HG23 H N N 572 VAL HXT H N N 573 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6OG P OP1 doub N N 1 6OG P OP2 sing N N 2 6OG P "O5'" sing N N 3 6OG OP2 HOP2 sing N N 4 6OG "O5'" "C5'" sing N N 5 6OG N9 C4 sing Y N 6 6OG N9 C8 sing Y N 7 6OG N9 "C1'" sing N N 8 6OG C4 N3 sing Y N 9 6OG C4 C5 doub Y N 10 6OG N3 C2 doub Y N 11 6OG C2 N2 sing N N 12 6OG C2 N1 sing Y N 13 6OG N2 HN21 sing N N 14 6OG N2 HN22 sing N N 15 6OG N1 C6 doub Y N 16 6OG C6 O6 sing N N 17 6OG C6 C5 sing Y N 18 6OG O6 C sing N N 19 6OG C5 N7 sing Y N 20 6OG N7 C8 doub Y N 21 6OG C8 H8 sing N N 22 6OG "C2'" "C1'" sing N N 23 6OG "C2'" "C3'" sing N N 24 6OG "C2'" "H2'" sing N N 25 6OG "C2'" "H2''" sing N N 26 6OG "C5'" "C4'" sing N N 27 6OG "C5'" "H5'" sing N N 28 6OG "C5'" "H5''" sing N N 29 6OG "C4'" "O4'" sing N N 30 6OG "C4'" "C3'" sing N N 31 6OG "C4'" "H4'" sing N N 32 6OG "O4'" "C1'" sing N N 33 6OG "C1'" "H1'" sing N N 34 6OG "C3'" "O3'" sing N N 35 6OG "C3'" "H3'" sing N N 36 6OG "O3'" "HO3'" sing N N 37 6OG C H1 sing N N 38 6OG C H2 sing N N 39 6OG C H3 sing N N 40 6OG P OP3 sing N N 41 6OG OP3 HOP3 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DC OP3 P sing N N 163 DC OP3 HOP3 sing N N 164 DC P OP1 doub N N 165 DC P OP2 sing N N 166 DC P "O5'" sing N N 167 DC OP2 HOP2 sing N N 168 DC "O5'" "C5'" sing N N 169 DC "C5'" "C4'" sing N N 170 DC "C5'" "H5'" sing N N 171 DC "C5'" "H5''" sing N N 172 DC "C4'" "O4'" sing N N 173 DC "C4'" "C3'" sing N N 174 DC "C4'" "H4'" sing N N 175 DC "O4'" "C1'" sing N N 176 DC "C3'" "O3'" sing N N 177 DC "C3'" "C2'" sing N N 178 DC "C3'" "H3'" sing N N 179 DC "O3'" "HO3'" sing N N 180 DC "C2'" "C1'" sing N N 181 DC "C2'" "H2'" sing N N 182 DC "C2'" "H2''" sing N N 183 DC "C1'" N1 sing N N 184 DC "C1'" "H1'" sing N N 185 DC N1 C2 sing N N 186 DC N1 C6 sing N N 187 DC C2 O2 doub N N 188 DC C2 N3 sing N N 189 DC N3 C4 doub N N 190 DC C4 N4 sing N N 191 DC C4 C5 sing N N 192 DC N4 H41 sing N N 193 DC N4 H42 sing N N 194 DC C5 C6 doub N N 195 DC C5 H5 sing N N 196 DC C6 H6 sing N N 197 DG OP3 P sing N N 198 DG OP3 HOP3 sing N N 199 DG P OP1 doub N N 200 DG P OP2 sing N N 201 DG P "O5'" sing N N 202 DG OP2 HOP2 sing N N 203 DG "O5'" "C5'" sing N N 204 DG "C5'" "C4'" sing N N 205 DG "C5'" "H5'" sing N N 206 DG "C5'" "H5''" sing N N 207 DG "C4'" "O4'" sing N N 208 DG "C4'" "C3'" sing N N 209 DG "C4'" "H4'" sing N N 210 DG "O4'" "C1'" sing N N 211 DG "C3'" "O3'" sing N N 212 DG "C3'" "C2'" sing N N 213 DG "C3'" "H3'" sing N N 214 DG "O3'" "HO3'" sing N N 215 DG "C2'" "C1'" sing N N 216 DG "C2'" "H2'" sing N N 217 DG "C2'" "H2''" sing N N 218 DG "C1'" N9 sing N N 219 DG "C1'" "H1'" sing N N 220 DG N9 C8 sing Y N 221 DG N9 C4 sing Y N 222 DG C8 N7 doub Y N 223 DG C8 H8 sing N N 224 DG N7 C5 sing Y N 225 DG C5 C6 sing N N 226 DG C5 C4 doub Y N 227 DG C6 O6 doub N N 228 DG C6 N1 sing N N 229 DG N1 C2 sing N N 230 DG N1 H1 sing N N 231 DG C2 N2 sing N N 232 DG C2 N3 doub N N 233 DG N2 H21 sing N N 234 DG N2 H22 sing N N 235 DG N3 C4 sing N N 236 DT OP3 P sing N N 237 DT OP3 HOP3 sing N N 238 DT P OP1 doub N N 239 DT P OP2 sing N N 240 DT P "O5'" sing N N 241 DT OP2 HOP2 sing N N 242 DT "O5'" "C5'" sing N N 243 DT "C5'" "C4'" sing N N 244 DT "C5'" "H5'" sing N N 245 DT "C5'" "H5''" sing N N 246 DT "C4'" "O4'" sing N N 247 DT "C4'" "C3'" sing N N 248 DT "C4'" "H4'" sing N N 249 DT "O4'" "C1'" sing N N 250 DT "C3'" "O3'" sing N N 251 DT "C3'" "C2'" sing N N 252 DT "C3'" "H3'" sing N N 253 DT "O3'" "HO3'" sing N N 254 DT "C2'" "C1'" sing N N 255 DT "C2'" "H2'" sing N N 256 DT "C2'" "H2''" sing N N 257 DT "C1'" N1 sing N N 258 DT "C1'" "H1'" sing N N 259 DT N1 C2 sing N N 260 DT N1 C6 sing N N 261 DT C2 O2 doub N N 262 DT C2 N3 sing N N 263 DT N3 C4 sing N N 264 DT N3 H3 sing N N 265 DT C4 O4 doub N N 266 DT C4 C5 sing N N 267 DT C5 C7 sing N N 268 DT C5 C6 doub N N 269 DT C7 H71 sing N N 270 DT C7 H72 sing N N 271 DT C7 H73 sing N N 272 DT C6 H6 sing N N 273 GLN N CA sing N N 274 GLN N H sing N N 275 GLN N H2 sing N N 276 GLN CA C sing N N 277 GLN CA CB sing N N 278 GLN CA HA sing N N 279 GLN C O doub N N 280 GLN C OXT sing N N 281 GLN CB CG sing N N 282 GLN CB HB2 sing N N 283 GLN CB HB3 sing N N 284 GLN CG CD sing N N 285 GLN CG HG2 sing N N 286 GLN CG HG3 sing N N 287 GLN CD OE1 doub N N 288 GLN CD NE2 sing N N 289 GLN NE2 HE21 sing N N 290 GLN NE2 HE22 sing N N 291 GLN OXT HXT sing N N 292 GLU N CA sing N N 293 GLU N H sing N N 294 GLU N H2 sing N N 295 GLU CA C sing N N 296 GLU CA CB sing N N 297 GLU CA HA sing N N 298 GLU C O doub N N 299 GLU C OXT sing N N 300 GLU CB CG sing N N 301 GLU CB HB2 sing N N 302 GLU CB HB3 sing N N 303 GLU CG CD sing N N 304 GLU CG HG2 sing N N 305 GLU CG HG3 sing N N 306 GLU CD OE1 doub N N 307 GLU CD OE2 sing N N 308 GLU OE2 HE2 sing N N 309 GLU OXT HXT sing N N 310 GLY N CA sing N N 311 GLY N H sing N N 312 GLY N H2 sing N N 313 GLY CA C sing N N 314 GLY CA HA2 sing N N 315 GLY CA HA3 sing N N 316 GLY C O doub N N 317 GLY C OXT sing N N 318 GLY OXT HXT sing N N 319 HIS N CA sing N N 320 HIS N H sing N N 321 HIS N H2 sing N N 322 HIS CA C sing N N 323 HIS CA CB sing N N 324 HIS CA HA sing N N 325 HIS C O doub N N 326 HIS C OXT sing N N 327 HIS CB CG sing N N 328 HIS CB HB2 sing N N 329 HIS CB HB3 sing N N 330 HIS CG ND1 sing Y N 331 HIS CG CD2 doub Y N 332 HIS ND1 CE1 doub Y N 333 HIS ND1 HD1 sing N N 334 HIS CD2 NE2 sing Y N 335 HIS CD2 HD2 sing N N 336 HIS CE1 NE2 sing Y N 337 HIS CE1 HE1 sing N N 338 HIS NE2 HE2 sing N N 339 HIS OXT HXT sing N N 340 HOH O H1 sing N N 341 HOH O H2 sing N N 342 ILE N CA sing N N 343 ILE N H sing N N 344 ILE N H2 sing N N 345 ILE CA C sing N N 346 ILE CA CB sing N N 347 ILE CA HA sing N N 348 ILE C O doub N N 349 ILE C OXT sing N N 350 ILE CB CG1 sing N N 351 ILE CB CG2 sing N N 352 ILE CB HB sing N N 353 ILE CG1 CD1 sing N N 354 ILE CG1 HG12 sing N N 355 ILE CG1 HG13 sing N N 356 ILE CG2 HG21 sing N N 357 ILE CG2 HG22 sing N N 358 ILE CG2 HG23 sing N N 359 ILE CD1 HD11 sing N N 360 ILE CD1 HD12 sing N N 361 ILE CD1 HD13 sing N N 362 ILE OXT HXT sing N N 363 LEU N CA sing N N 364 LEU N H sing N N 365 LEU N H2 sing N N 366 LEU CA C sing N N 367 LEU CA CB sing N N 368 LEU CA HA sing N N 369 LEU C O doub N N 370 LEU C OXT sing N N 371 LEU CB CG sing N N 372 LEU CB HB2 sing N N 373 LEU CB HB3 sing N N 374 LEU CG CD1 sing N N 375 LEU CG CD2 sing N N 376 LEU CG HG sing N N 377 LEU CD1 HD11 sing N N 378 LEU CD1 HD12 sing N N 379 LEU CD1 HD13 sing N N 380 LEU CD2 HD21 sing N N 381 LEU CD2 HD22 sing N N 382 LEU CD2 HD23 sing N N 383 LEU OXT HXT sing N N 384 LYS N CA sing N N 385 LYS N H sing N N 386 LYS N H2 sing N N 387 LYS CA C sing N N 388 LYS CA CB sing N N 389 LYS CA HA sing N N 390 LYS C O doub N N 391 LYS C OXT sing N N 392 LYS CB CG sing N N 393 LYS CB HB2 sing N N 394 LYS CB HB3 sing N N 395 LYS CG CD sing N N 396 LYS CG HG2 sing N N 397 LYS CG HG3 sing N N 398 LYS CD CE sing N N 399 LYS CD HD2 sing N N 400 LYS CD HD3 sing N N 401 LYS CE NZ sing N N 402 LYS CE HE2 sing N N 403 LYS CE HE3 sing N N 404 LYS NZ HZ1 sing N N 405 LYS NZ HZ2 sing N N 406 LYS NZ HZ3 sing N N 407 LYS OXT HXT sing N N 408 MET N CA sing N N 409 MET N H sing N N 410 MET N H2 sing N N 411 MET CA C sing N N 412 MET CA CB sing N N 413 MET CA HA sing N N 414 MET C O doub N N 415 MET C OXT sing N N 416 MET CB CG sing N N 417 MET CB HB2 sing N N 418 MET CB HB3 sing N N 419 MET CG SD sing N N 420 MET CG HG2 sing N N 421 MET CG HG3 sing N N 422 MET SD CE sing N N 423 MET CE HE1 sing N N 424 MET CE HE2 sing N N 425 MET CE HE3 sing N N 426 MET OXT HXT sing N N 427 PHE N CA sing N N 428 PHE N H sing N N 429 PHE N H2 sing N N 430 PHE CA C sing N N 431 PHE CA CB sing N N 432 PHE CA HA sing N N 433 PHE C O doub N N 434 PHE C OXT sing N N 435 PHE CB CG sing N N 436 PHE CB HB2 sing N N 437 PHE CB HB3 sing N N 438 PHE CG CD1 doub Y N 439 PHE CG CD2 sing Y N 440 PHE CD1 CE1 sing Y N 441 PHE CD1 HD1 sing N N 442 PHE CD2 CE2 doub Y N 443 PHE CD2 HD2 sing N N 444 PHE CE1 CZ doub Y N 445 PHE CE1 HE1 sing N N 446 PHE CE2 CZ sing Y N 447 PHE CE2 HE2 sing N N 448 PHE CZ HZ sing N N 449 PHE OXT HXT sing N N 450 PRO N CA sing N N 451 PRO N CD sing N N 452 PRO N H sing N N 453 PRO CA C sing N N 454 PRO CA CB sing N N 455 PRO CA HA sing N N 456 PRO C O doub N N 457 PRO C OXT sing N N 458 PRO CB CG sing N N 459 PRO CB HB2 sing N N 460 PRO CB HB3 sing N N 461 PRO CG CD sing N N 462 PRO CG HG2 sing N N 463 PRO CG HG3 sing N N 464 PRO CD HD2 sing N N 465 PRO CD HD3 sing N N 466 PRO OXT HXT sing N N 467 SER N CA sing N N 468 SER N H sing N N 469 SER N H2 sing N N 470 SER CA C sing N N 471 SER CA CB sing N N 472 SER CA HA sing N N 473 SER C O doub N N 474 SER C OXT sing N N 475 SER CB OG sing N N 476 SER CB HB2 sing N N 477 SER CB HB3 sing N N 478 SER OG HG sing N N 479 SER OXT HXT sing N N 480 THR N CA sing N N 481 THR N H sing N N 482 THR N H2 sing N N 483 THR CA C sing N N 484 THR CA CB sing N N 485 THR CA HA sing N N 486 THR C O doub N N 487 THR C OXT sing N N 488 THR CB OG1 sing N N 489 THR CB CG2 sing N N 490 THR CB HB sing N N 491 THR OG1 HG1 sing N N 492 THR CG2 HG21 sing N N 493 THR CG2 HG22 sing N N 494 THR CG2 HG23 sing N N 495 THR OXT HXT sing N N 496 TRP N CA sing N N 497 TRP N H sing N N 498 TRP N H2 sing N N 499 TRP CA C sing N N 500 TRP CA CB sing N N 501 TRP CA HA sing N N 502 TRP C O doub N N 503 TRP C OXT sing N N 504 TRP CB CG sing N N 505 TRP CB HB2 sing N N 506 TRP CB HB3 sing N N 507 TRP CG CD1 doub Y N 508 TRP CG CD2 sing Y N 509 TRP CD1 NE1 sing Y N 510 TRP CD1 HD1 sing N N 511 TRP CD2 CE2 doub Y N 512 TRP CD2 CE3 sing Y N 513 TRP NE1 CE2 sing Y N 514 TRP NE1 HE1 sing N N 515 TRP CE2 CZ2 sing Y N 516 TRP CE3 CZ3 doub Y N 517 TRP CE3 HE3 sing N N 518 TRP CZ2 CH2 doub Y N 519 TRP CZ2 HZ2 sing N N 520 TRP CZ3 CH2 sing Y N 521 TRP CZ3 HZ3 sing N N 522 TRP CH2 HH2 sing N N 523 TRP OXT HXT sing N N 524 TYR N CA sing N N 525 TYR N H sing N N 526 TYR N H2 sing N N 527 TYR CA C sing N N 528 TYR CA CB sing N N 529 TYR CA HA sing N N 530 TYR C O doub N N 531 TYR C OXT sing N N 532 TYR CB CG sing N N 533 TYR CB HB2 sing N N 534 TYR CB HB3 sing N N 535 TYR CG CD1 doub Y N 536 TYR CG CD2 sing Y N 537 TYR CD1 CE1 sing Y N 538 TYR CD1 HD1 sing N N 539 TYR CD2 CE2 doub Y N 540 TYR CD2 HD2 sing N N 541 TYR CE1 CZ doub Y N 542 TYR CE1 HE1 sing N N 543 TYR CE2 CZ sing Y N 544 TYR CE2 HE2 sing N N 545 TYR CZ OH sing N N 546 TYR OH HH sing N N 547 TYR OXT HXT sing N N 548 VAL N CA sing N N 549 VAL N H sing N N 550 VAL N H2 sing N N 551 VAL CA C sing N N 552 VAL CA CB sing N N 553 VAL CA HA sing N N 554 VAL C O doub N N 555 VAL C OXT sing N N 556 VAL CB CG1 sing N N 557 VAL CB CG2 sing N N 558 VAL CB HB sing N N 559 VAL CG1 HG11 sing N N 560 VAL CG1 HG12 sing N N 561 VAL CG1 HG13 sing N N 562 VAL CG2 HG21 sing N N 563 VAL CG2 HG22 sing N N 564 VAL CG2 HG23 sing N N 565 VAL OXT HXT sing N N 566 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1T38 'b-form double helix' 1T38 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 13 1_555 -0.032 -0.121 -1.064 -15.388 -6.254 0.450 1 B_DG1:DC26_C B 1 ? C 26 ? 19 1 1 A DC 2 1_555 B DG 12 1_555 -0.014 -0.069 -0.529 6.883 -12.928 -1.871 2 B_DC2:DG25_C B 2 ? C 25 ? 19 1 1 A DC 3 1_555 B DG 11 1_555 0.056 0.051 0.010 1.286 -12.598 -1.887 3 B_DC3:DG24_C B 3 ? C 24 ? 19 1 1 A DA 4 1_555 B DT 10 1_555 0.060 0.134 -0.427 0.273 -17.528 0.193 4 B_DA4:DT23_C B 4 ? C 23 ? 20 1 1 A DT 5 1_555 B DA 9 1_555 -0.201 0.121 0.030 2.443 -4.201 -7.376 5 B_DT5:DA22_C B 5 ? C 22 ? 20 1 1 A DG 6 1_555 B DC 8 1_555 -0.239 -0.115 0.871 21.691 8.280 -4.175 6 B_DG6:DC21_C B 6 ? C 21 ? 19 1 1 A DC 8 1_555 B DG 6 1_555 0.214 0.019 0.988 -5.064 3.018 -0.463 7 B_DC8:DG19_C B 8 ? C 19 ? 19 1 1 A DT 9 1_555 B DA 5 1_555 0.038 -0.018 0.406 -5.703 -4.694 1.229 8 B_DT9:DA18_C B 9 ? C 18 ? 20 1 1 A DA 10 1_555 B DT 4 1_555 0.101 -0.171 -0.882 -3.145 -15.737 -2.001 9 B_DA10:DT17_C B 10 ? C 17 ? 20 1 1 A DG 11 1_555 B DC 3 1_555 -0.087 -0.288 -1.471 -13.740 -10.090 1.812 10 B_DG11:DC16_C B 11 ? C 16 ? 19 1 1 A DT 12 1_555 B DA 2 1_555 0.026 -0.192 -1.072 6.584 -15.486 4.057 11 B_DT12:DA15_C B 12 ? C 15 ? 20 1 1 A DA 13 1_555 B DT 1 1_555 0.152 -0.040 -0.077 -0.188 -8.812 0.268 12 B_DA13:DT14_C B 13 ? C 14 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 13 1_555 A DC 2 1_555 B DG 12 1_555 -1.267 0.540 2.651 -5.596 -5.148 37.179 1.377 1.357 2.711 -7.972 8.666 37.922 1 BB_DG1DC2:DG25DC26_CC B 1 ? C 26 ? B 2 ? C 25 ? 1 A DC 2 1_555 B DG 12 1_555 A DC 3 1_555 B DG 11 1_555 0.440 0.168 3.564 0.175 7.786 33.734 -1.035 -0.710 3.516 13.199 -0.296 34.596 2 BB_DC2DC3:DG24DG25_CC B 2 ? C 25 ? B 3 ? C 24 ? 1 A DC 3 1_555 B DG 11 1_555 A DA 4 1_555 B DT 10 1_555 -0.109 0.975 3.672 3.152 0.970 40.430 1.286 0.552 3.675 1.400 -4.552 40.558 3 BB_DC3DA4:DT23DG24_CC B 3 ? C 24 ? B 4 ? C 23 ? 1 A DA 4 1_555 B DT 10 1_555 A DT 5 1_555 B DA 9 1_555 0.311 -0.688 3.220 -2.104 0.798 29.712 -1.501 -1.034 3.171 1.553 4.095 29.796 4 BB_DA4DT5:DA22DT23_CC B 4 ? C 23 ? B 5 ? C 22 ? 1 A DT 5 1_555 B DA 9 1_555 A DG 6 1_555 B DC 8 1_555 0.829 1.286 2.855 -0.994 2.614 33.714 1.837 -1.567 2.919 4.497 1.710 33.827 5 BB_DT5DG6:DC21DA22_CC B 5 ? C 22 ? B 6 ? C 21 ? 1 A DC 8 1_555 B DG 6 1_555 A DT 9 1_555 B DA 5 1_555 0.663 -0.666 3.334 5.206 6.636 35.318 -2.015 -0.323 3.223 10.749 -8.432 36.280 6 BB_DC8DT9:DA18DG19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 A DT 9 1_555 B DA 5 1_555 A DA 10 1_555 B DT 4 1_555 -0.705 1.163 3.213 7.502 5.889 35.312 1.050 2.150 3.150 9.495 -12.097 36.537 7 BB_DT9DA10:DT17DA18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 A DA 10 1_555 B DT 4 1_555 A DG 11 1_555 B DC 3 1_555 0.215 -0.183 3.687 -2.936 7.075 32.475 -1.636 -0.921 3.537 12.435 5.160 33.342 8 BB_DA10DG11:DC16DT17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 A DG 11 1_555 B DC 3 1_555 A DT 12 1_555 B DA 2 1_555 -0.405 0.093 2.516 -1.788 1.537 31.850 -0.047 0.485 2.536 2.796 3.253 31.935 9 BB_DG11DT12:DA15DC16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 A DT 12 1_555 B DA 2 1_555 A DA 13 1_555 B DT 1 1_555 -0.058 0.826 3.590 -7.307 10.775 36.543 -0.257 -0.932 3.628 16.551 11.224 38.718 10 BB_DT12DA13:DT14DA15_CC B 12 ? C 15 ? B 13 ? C 14 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EH6 _pdbx_initial_refinement_model.details 'PDB ENTRY 1EH6' #