HEADER TRANSFERASE 26-APR-04 1T3H TITLE X-RAY STRUCTURE OF DEPHOSPHO-COA KINASE FROM E. COLI NORTEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET ER57 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEPHOSPHO-COA KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DEPHOSPHOCOENZYME A KINASE; COMPND 5 EC: 2.7.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.P.KUZIN,Y.CHEN,F.FOROUHAR,W.EDSTROM,J.BENACH,S.VOROBIEV,T.ACTON, AUTHOR 2 R.SHASTRY,L.-C.MA,R.XIA,G.MONTELIONE,L.TONG,J.HUNT,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 13-NOV-24 1T3H 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1T3H 1 VERSN REVDAT 2 25-JAN-05 1T3H 1 AUTHOR KEYWDS REMARK REVDAT 1 11-MAY-04 1T3H 0 JRNL AUTH A.P.KUZIN,Y.CHEN,F.FOROUHAR,W.EDSTROM,J.BENACH,S.VOROBIEV, JRNL AUTH 2 T.ACTON,R.SHASTRY,L.-C.MA,R.XIA,G.MONTELIONE,L.TONG,J.HUNT JRNL TITL X-RAY STRUCTURE OF DEPHOSPHO-COA KINASE FROM E. COLI JRNL TITL 2 NORTEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER57 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 228923.740 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 41372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2112 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5571 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 329 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.30000 REMARK 3 B22 (A**2) : 2.04000 REMARK 3 B33 (A**2) : 1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.400 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 18.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 160 MM AMMONIUM REMARK 280 SULFATE, 22% PEG 3350, PH 5.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.45250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 LEU B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 ILE C 59 REMARK 465 ALA C 60 REMARK 465 ALA C 61 REMARK 465 ASP C 62 REMARK 465 GLY C 63 REMARK 465 THR C 64 REMARK 465 LEU C 65 REMARK 465 GLN C 66 REMARK 465 ARG C 67 REMARK 465 ARG C 68 REMARK 465 ALA C 69 REMARK 465 LEU C 70 REMARK 465 ARG C 71 REMARK 465 GLU C 72 REMARK 465 ARG C 73 REMARK 465 ILE C 74 REMARK 465 PHE C 75 REMARK 465 ALA C 76 REMARK 465 ASN C 77 REMARK 465 PRO C 78 REMARK 465 LEU C 208 REMARK 465 HIS C 209 REMARK 465 HIS C 210 REMARK 465 HIS C 211 REMARK 465 HIS C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 102 CA GLN B 102 CB -0.157 REMARK 500 GLN B 102 CB GLN B 102 CG -0.419 REMARK 500 GLN B 102 CG GLN B 102 CD -0.592 REMARK 500 THR B 104 N THR B 104 CA -0.404 REMARK 500 ALA C 36 C ARG C 37 N -0.187 REMARK 500 ARG C 37 CA ARG C 37 C -0.216 REMARK 500 ARG C 37 C GLN C 38 N -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 102 CB - CA - C ANGL. DEV. = 30.7 DEGREES REMARK 500 GLN B 102 CA - CB - CG ANGL. DEV. = 47.5 DEGREES REMARK 500 GLN B 102 CG - CD - OE1 ANGL. DEV. = -19.9 DEGREES REMARK 500 ALA B 103 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 THR B 104 C - N - CA ANGL. DEV. = 27.5 DEGREES REMARK 500 THR B 104 N - CA - CB ANGL. DEV. = 24.6 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ALA C 36 CA - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 ALA C 36 O - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG C 37 C - N - CA ANGL. DEV. = -24.5 DEGREES REMARK 500 ARG C 37 CB - CA - C ANGL. DEV. = -32.6 DEGREES REMARK 500 ARG C 37 N - CA - C ANGL. DEV. = 28.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 48 -70.95 -51.07 REMARK 500 GLN A 66 58.17 -91.16 REMARK 500 GLU A 72 -70.99 -75.58 REMARK 500 PRO A 78 0.32 -52.00 REMARK 500 LEU A 84 1.17 -56.51 REMARK 500 ASP A 146 73.44 50.47 REMARK 500 ASN A 176 55.68 -118.43 REMARK 500 ALA A 178 117.51 67.10 REMARK 500 PRO A 179 41.07 -66.42 REMARK 500 ALA B 76 54.44 -106.72 REMARK 500 ASN B 77 88.05 -165.34 REMARK 500 ALA B 86 3.08 -62.83 REMARK 500 THR B 104 -71.76 -79.58 REMARK 500 ARG B 144 4.13 -68.82 REMARK 500 PRO B 179 42.37 -74.77 REMARK 500 SER B 184 -71.56 -52.85 REMARK 500 GLU C 41 158.26 -48.23 REMARK 500 ILE C 50 -76.71 -62.44 REMARK 500 ALA C 56 -5.73 -54.05 REMARK 500 ASN C 57 40.33 -90.35 REMARK 500 ASN C 82 43.37 -84.54 REMARK 500 TRP C 83 -30.77 -130.17 REMARK 500 ASN C 85 46.07 -82.88 REMARK 500 ALA C 86 -8.06 -159.29 REMARK 500 LEU C 87 -66.77 -100.43 REMARK 500 ASP C 180 -31.08 -146.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN B 102 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR B 104 11.22 REMARK 500 ARG C 37 -12.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER57 RELATED DB: TARGETDB DBREF 1T3H A 1 206 UNP P0A6I9 COAE_ECOLI 1 206 DBREF 1T3H B 1 206 UNP P0A6I9 COAE_ECOLI 1 206 DBREF 1T3H C 1 206 UNP P0A6I9 COAE_ECOLI 1 206 SEQADV 1T3H MSE A 1 UNP P0A6I9 MET 1 MODIFIED RESIDUE SEQADV 1T3H MSE A 58 UNP P0A6I9 MET 58 MODIFIED RESIDUE SEQADV 1T3H MSE A 142 UNP P0A6I9 MET 142 MODIFIED RESIDUE SEQADV 1T3H GLU A 207 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H LEU A 208 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS A 209 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS A 210 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS A 211 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS A 212 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS A 213 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS A 214 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H MSE B 1 UNP P0A6I9 MET 1 MODIFIED RESIDUE SEQADV 1T3H MSE B 58 UNP P0A6I9 MET 58 MODIFIED RESIDUE SEQADV 1T3H MSE B 142 UNP P0A6I9 MET 142 MODIFIED RESIDUE SEQADV 1T3H GLU B 207 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H LEU B 208 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS B 209 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS B 210 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS B 211 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS B 212 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS B 213 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS B 214 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H MSE C 1 UNP P0A6I9 MET 1 MODIFIED RESIDUE SEQADV 1T3H MSE C 58 UNP P0A6I9 MET 58 MODIFIED RESIDUE SEQADV 1T3H MSE C 142 UNP P0A6I9 MET 142 MODIFIED RESIDUE SEQADV 1T3H GLU C 207 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H LEU C 208 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS C 209 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS C 210 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS C 211 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS C 212 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS C 213 UNP P0A6I9 EXPRESSION TAG SEQADV 1T3H HIS C 214 UNP P0A6I9 EXPRESSION TAG SEQRES 1 A 214 MSE ARG TYR ILE VAL ALA LEU THR GLY GLY ILE GLY SER SEQRES 2 A 214 GLY LYS SER THR VAL ALA ASN ALA PHE ALA ASP LEU GLY SEQRES 3 A 214 ILE ASN VAL ILE ASP ALA ASP ILE ILE ALA ARG GLN VAL SEQRES 4 A 214 VAL GLU PRO GLY ALA PRO ALA LEU HIS ALA ILE ALA ASP SEQRES 5 A 214 HIS PHE GLY ALA ASN MSE ILE ALA ALA ASP GLY THR LEU SEQRES 6 A 214 GLN ARG ARG ALA LEU ARG GLU ARG ILE PHE ALA ASN PRO SEQRES 7 A 214 GLU GLU LYS ASN TRP LEU ASN ALA LEU LEU HIS PRO LEU SEQRES 8 A 214 ILE GLN GLN GLU THR GLN HIS GLN ILE GLN GLN ALA THR SEQRES 9 A 214 SER PRO TYR VAL LEU TRP VAL VAL PRO LEU LEU VAL GLU SEQRES 10 A 214 ASN SER LEU TYR LYS LYS ALA ASN ARG VAL LEU VAL VAL SEQRES 11 A 214 ASP VAL SER PRO GLU THR GLN LEU LYS ARG THR MSE GLN SEQRES 12 A 214 ARG ASP ASP VAL THR ARG GLU HIS VAL GLU GLN ILE LEU SEQRES 13 A 214 ALA ALA GLN ALA THR ARG GLU ALA ARG LEU ALA VAL ALA SEQRES 14 A 214 ASP ASP VAL ILE ASP ASN ASN GLY ALA PRO ASP ALA ILE SEQRES 15 A 214 ALA SER ASP VAL ALA ARG LEU HIS ALA HIS TYR LEU GLN SEQRES 16 A 214 LEU ALA SER GLN PHE VAL SER GLN GLU LYS PRO GLU LEU SEQRES 17 A 214 HIS HIS HIS HIS HIS HIS SEQRES 1 B 214 MSE ARG TYR ILE VAL ALA LEU THR GLY GLY ILE GLY SER SEQRES 2 B 214 GLY LYS SER THR VAL ALA ASN ALA PHE ALA ASP LEU GLY SEQRES 3 B 214 ILE ASN VAL ILE ASP ALA ASP ILE ILE ALA ARG GLN VAL SEQRES 4 B 214 VAL GLU PRO GLY ALA PRO ALA LEU HIS ALA ILE ALA ASP SEQRES 5 B 214 HIS PHE GLY ALA ASN MSE ILE ALA ALA ASP GLY THR LEU SEQRES 6 B 214 GLN ARG ARG ALA LEU ARG GLU ARG ILE PHE ALA ASN PRO SEQRES 7 B 214 GLU GLU LYS ASN TRP LEU ASN ALA LEU LEU HIS PRO LEU SEQRES 8 B 214 ILE GLN GLN GLU THR GLN HIS GLN ILE GLN GLN ALA THR SEQRES 9 B 214 SER PRO TYR VAL LEU TRP VAL VAL PRO LEU LEU VAL GLU SEQRES 10 B 214 ASN SER LEU TYR LYS LYS ALA ASN ARG VAL LEU VAL VAL SEQRES 11 B 214 ASP VAL SER PRO GLU THR GLN LEU LYS ARG THR MSE GLN SEQRES 12 B 214 ARG ASP ASP VAL THR ARG GLU HIS VAL GLU GLN ILE LEU SEQRES 13 B 214 ALA ALA GLN ALA THR ARG GLU ALA ARG LEU ALA VAL ALA SEQRES 14 B 214 ASP ASP VAL ILE ASP ASN ASN GLY ALA PRO ASP ALA ILE SEQRES 15 B 214 ALA SER ASP VAL ALA ARG LEU HIS ALA HIS TYR LEU GLN SEQRES 16 B 214 LEU ALA SER GLN PHE VAL SER GLN GLU LYS PRO GLU LEU SEQRES 17 B 214 HIS HIS HIS HIS HIS HIS SEQRES 1 C 214 MSE ARG TYR ILE VAL ALA LEU THR GLY GLY ILE GLY SER SEQRES 2 C 214 GLY LYS SER THR VAL ALA ASN ALA PHE ALA ASP LEU GLY SEQRES 3 C 214 ILE ASN VAL ILE ASP ALA ASP ILE ILE ALA ARG GLN VAL SEQRES 4 C 214 VAL GLU PRO GLY ALA PRO ALA LEU HIS ALA ILE ALA ASP SEQRES 5 C 214 HIS PHE GLY ALA ASN MSE ILE ALA ALA ASP GLY THR LEU SEQRES 6 C 214 GLN ARG ARG ALA LEU ARG GLU ARG ILE PHE ALA ASN PRO SEQRES 7 C 214 GLU GLU LYS ASN TRP LEU ASN ALA LEU LEU HIS PRO LEU SEQRES 8 C 214 ILE GLN GLN GLU THR GLN HIS GLN ILE GLN GLN ALA THR SEQRES 9 C 214 SER PRO TYR VAL LEU TRP VAL VAL PRO LEU LEU VAL GLU SEQRES 10 C 214 ASN SER LEU TYR LYS LYS ALA ASN ARG VAL LEU VAL VAL SEQRES 11 C 214 ASP VAL SER PRO GLU THR GLN LEU LYS ARG THR MSE GLN SEQRES 12 C 214 ARG ASP ASP VAL THR ARG GLU HIS VAL GLU GLN ILE LEU SEQRES 13 C 214 ALA ALA GLN ALA THR ARG GLU ALA ARG LEU ALA VAL ALA SEQRES 14 C 214 ASP ASP VAL ILE ASP ASN ASN GLY ALA PRO ASP ALA ILE SEQRES 15 C 214 ALA SER ASP VAL ALA ARG LEU HIS ALA HIS TYR LEU GLN SEQRES 16 C 214 LEU ALA SER GLN PHE VAL SER GLN GLU LYS PRO GLU LEU SEQRES 17 C 214 HIS HIS HIS HIS HIS HIS MODRES 1T3H MSE A 1 MET SELENOMETHIONINE MODRES 1T3H MSE A 58 MET SELENOMETHIONINE MODRES 1T3H MSE A 142 MET SELENOMETHIONINE MODRES 1T3H MSE B 1 MET SELENOMETHIONINE MODRES 1T3H MSE B 58 MET SELENOMETHIONINE MODRES 1T3H MSE B 142 MET SELENOMETHIONINE MODRES 1T3H MSE C 1 MET SELENOMETHIONINE MODRES 1T3H MSE C 58 MET SELENOMETHIONINE MODRES 1T3H MSE C 142 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 58 8 HET MSE A 142 8 HET MSE B 1 8 HET MSE B 58 8 HET MSE B 142 8 HET MSE C 1 8 HET MSE C 58 8 HET MSE C 142 8 HET SO4 A 301 5 HET SO4 B 302 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *143(H2 O) HELIX 1 1 GLY A 14 ASP A 24 1 11 HELIX 2 2 ALA A 32 VAL A 39 1 8 HELIX 3 3 ALA A 44 PHE A 54 1 11 HELIX 4 4 GLY A 55 ILE A 59 5 5 HELIX 5 5 GLN A 66 ASN A 77 1 12 HELIX 6 6 ASN A 82 ALA A 103 1 22 HELIX 7 7 SER A 119 ALA A 124 5 6 HELIX 8 8 SER A 133 ASP A 145 1 13 HELIX 9 9 THR A 148 ALA A 157 1 10 HELIX 10 10 THR A 161 ALA A 167 1 7 HELIX 11 11 ALA A 181 PHE A 200 1 20 HELIX 12 12 VAL A 201 GLN A 203 5 3 HELIX 13 13 GLY B 14 ASP B 24 1 11 HELIX 14 14 ALA B 32 VAL B 39 1 8 HELIX 15 15 ALA B 44 GLY B 55 1 12 HELIX 16 16 ALA B 56 ILE B 59 5 4 HELIX 17 17 GLN B 66 ALA B 76 1 11 HELIX 18 18 ASN B 77 ALA B 103 1 27 HELIX 19 19 SER B 119 ALA B 124 5 6 HELIX 20 20 SER B 133 ARG B 144 1 12 HELIX 21 21 THR B 148 GLN B 159 1 12 HELIX 22 22 THR B 161 VAL B 168 1 8 HELIX 23 23 ALA B 181 PHE B 200 1 20 HELIX 24 24 GLY C 14 ASP C 24 1 11 HELIX 25 25 ALA C 32 VAL C 39 1 8 HELIX 26 26 ALA C 44 PHE C 54 1 11 HELIX 27 27 LEU C 88 ALA C 103 1 16 HELIX 28 28 SER C 119 ALA C 124 5 6 HELIX 29 29 SER C 133 ASP C 145 1 13 HELIX 30 30 THR C 148 ALA C 157 1 10 HELIX 31 31 THR C 161 ALA C 169 1 9 HELIX 32 32 ILE C 182 SER C 198 1 17 HELIX 33 33 GLN C 199 GLN C 203 5 5 SHEET 1 A 5 VAL A 29 ASP A 31 0 SHEET 2 A 5 TYR A 107 VAL A 111 1 O LEU A 109 N ILE A 30 SHEET 3 A 5 TYR A 3 THR A 8 1 N LEU A 7 O TRP A 110 SHEET 4 A 5 ARG A 126 ASP A 131 1 O ARG A 126 N ALA A 6 SHEET 5 A 5 ASP A 171 ASP A 174 1 O ILE A 173 N ASP A 131 SHEET 1 B 5 ASN B 28 ASP B 31 0 SHEET 2 B 5 TYR B 107 VAL B 111 1 O LEU B 109 N ILE B 30 SHEET 3 B 5 TYR B 3 THR B 8 1 N LEU B 7 O TRP B 110 SHEET 4 B 5 ARG B 126 ASP B 131 1 O LEU B 128 N ALA B 6 SHEET 5 B 5 ASP B 171 ASP B 174 1 O ILE B 173 N VAL B 129 SHEET 1 C 5 VAL C 29 ASP C 31 0 SHEET 2 C 5 TYR C 107 VAL C 111 1 O LEU C 109 N ILE C 30 SHEET 3 C 5 TYR C 3 THR C 8 1 N LEU C 7 O TRP C 110 SHEET 4 C 5 ARG C 126 ASP C 131 1 O ARG C 126 N ALA C 6 SHEET 5 C 5 ASP C 171 ASP C 174 1 O ASP C 171 N VAL C 127 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C ASN A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N ILE A 59 1555 1555 1.33 LINK C THR A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLN A 143 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.32 LINK C ASN B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N ILE B 59 1555 1555 1.34 LINK C THR B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLN B 143 1555 1555 1.33 LINK C MSE C 1 N ARG C 2 1555 1555 1.34 LINK C ASN C 57 N MSE C 58 1555 1555 1.33 LINK C THR C 141 N MSE C 142 1555 1555 1.33 LINK C MSE C 142 N GLN C 143 1555 1555 1.33 SITE 1 AC1 5 GLY A 12 SER A 13 GLY A 14 LYS A 15 SITE 2 AC1 5 ARG A 144 SITE 1 AC2 5 GLN B 137 LEU B 156 GLN B 159 ALA B 160 SITE 2 AC2 5 ARG B 165 CRYST1 55.630 80.905 75.454 90.00 93.95 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017976 0.000000 0.001241 0.00000 SCALE2 0.000000 0.012360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013285 0.00000 CONECT 1 2 CONECT 2 1 3 5 CONECT 3 2 4 9 CONECT 4 3 CONECT 5 2 6 CONECT 6 5 7 CONECT 7 6 8 CONECT 8 7 CONECT 9 3 CONECT 400 406 CONECT 406 400 407 CONECT 407 406 408 410 CONECT 408 407 409 414 CONECT 409 408 CONECT 410 407 411 CONECT 411 410 412 CONECT 412 411 413 CONECT 413 412 CONECT 414 408 CONECT 1087 1092 CONECT 1092 1087 1093 CONECT 1093 1092 1094 1096 CONECT 1094 1093 1095 1100 CONECT 1095 1094 CONECT 1096 1093 1097 CONECT 1097 1096 1098 CONECT 1098 1097 1099 CONECT 1099 1098 CONECT 1100 1094 CONECT 1605 1606 CONECT 1606 1605 1607 1609 CONECT 1607 1606 1608 1613 CONECT 1608 1607 CONECT 1609 1606 1610 CONECT 1610 1609 1611 CONECT 1611 1610 1612 CONECT 1612 1611 CONECT 1613 1607 CONECT 2004 2010 CONECT 2010 2004 2011 CONECT 2011 2010 2012 2014 CONECT 2012 2011 2013 2018 CONECT 2013 2012 CONECT 2014 2011 2015 CONECT 2015 2014 2016 CONECT 2016 2015 2017 CONECT 2017 2016 CONECT 2018 2012 CONECT 2691 2696 CONECT 2696 2691 2697 CONECT 2697 2696 2698 2700 CONECT 2698 2697 2699 2704 CONECT 2699 2698 CONECT 2700 2697 2701 CONECT 2701 2700 2702 CONECT 2702 2701 2703 CONECT 2703 2702 CONECT 2704 2698 CONECT 3209 3210 CONECT 3210 3209 3211 3213 CONECT 3211 3210 3212 3217 CONECT 3212 3211 CONECT 3213 3210 3214 CONECT 3214 3213 3215 CONECT 3215 3214 3216 CONECT 3216 3215 CONECT 3217 3211 CONECT 3608 3614 CONECT 3614 3608 3615 CONECT 3615 3614 3616 3618 CONECT 3616 3615 3617 CONECT 3617 3616 CONECT 3618 3615 3619 CONECT 3619 3618 3620 CONECT 3620 3619 3621 CONECT 3621 3620 CONECT 4136 4141 CONECT 4141 4136 4142 CONECT 4142 4141 4143 4145 CONECT 4143 4142 4144 4149 CONECT 4144 4143 CONECT 4145 4142 4146 CONECT 4146 4145 4147 CONECT 4147 4146 4148 CONECT 4148 4147 CONECT 4149 4143 CONECT 4654 4655 4656 4657 4658 CONECT 4655 4654 CONECT 4656 4654 CONECT 4657 4654 CONECT 4658 4654 CONECT 4659 4660 4661 4662 4663 CONECT 4660 4659 CONECT 4661 4659 CONECT 4662 4659 CONECT 4663 4659 MASTER 411 0 11 33 15 0 4 6 4803 3 96 51 END