HEADER HYDROLASE 27-APR-04 1T3K TITLE NMR STRUCTURE OF A CDC25-LIKE DUAL-SPECIFICITY TYROSINE PHOSPHATASE OF TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL-SPECIFICITY TYROSINE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARATH CDC25; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CDC25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CDC25, CELL CYCLE, PHOSPHORYLATION, PLANT, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.LANDRIEU,M.DA COSTA,L.DE VEYLDER,F.DEWITTE,K.VANDEPOELE,S.HASSAN, AUTHOR 2 J.M.WIERUSZESKI,J.D.FAURE,D.INZE,G.LIPPENS REVDAT 3 27-OCT-21 1T3K 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1T3K 1 VERSN REVDAT 1 07-SEP-04 1T3K 0 JRNL AUTH I.LANDRIEU,M.DA COSTA,L.DE VEYLDER,F.DEWITTE,K.VANDEPOELE, JRNL AUTH 2 S.HASSAN,J.M.WIERUSZESKI,J.D.FAURE,M.VAN MONTAGU,D.INZE, JRNL AUTH 3 G.LIPPENS JRNL TITL A SMALL CDC25 DUAL-SPECIFICITY TYROSINE-PHOSPHATASE ISOFORM JRNL TITL 2 IN ARABIDOPSIS THALIANA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 13380 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15329414 JRNL DOI 10.1073/PNAS.0405248101 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T3K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022267. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 400 MICROM U-15N,13C REMARK 210 ARATH;CDC25; 400 MICROM U-15N REMARK 210 ARATH;CDC25; 400 MICROM 13C REMARK 210 ARATH;CDC25 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_HNCACO; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCA; 3D_15N- REMARK 210 SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SNARF, CNS 1.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CRYO-PROBEHEAD REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 23 H THR A 67 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 80.90 60.04 REMARK 500 1 MET A 3 35.26 -163.66 REMARK 500 1 ALA A 4 81.53 -152.95 REMARK 500 1 SER A 6 154.46 61.18 REMARK 500 1 LEU A 18 -88.52 -96.99 REMARK 500 1 ARG A 21 -174.10 157.64 REMARK 500 1 PRO A 22 -13.07 -46.13 REMARK 500 1 ASN A 23 -9.20 -56.43 REMARK 500 1 ARG A 30 -32.69 178.25 REMARK 500 1 ASP A 31 -21.19 154.14 REMARK 500 1 GLU A 32 -59.18 75.19 REMARK 500 1 ILE A 40 -174.92 -170.14 REMARK 500 1 SER A 43 131.59 59.46 REMARK 500 1 ALA A 47 -160.40 -65.27 REMARK 500 1 SER A 48 28.05 -168.48 REMARK 500 1 PHE A 51 -13.10 75.13 REMARK 500 1 ASP A 64 -65.82 66.97 REMARK 500 1 HIS A 71 -70.04 98.45 REMARK 500 1 SER A 72 -12.24 99.31 REMARK 500 1 ALA A 73 -83.32 -113.40 REMARK 500 1 LEU A 74 35.55 -169.56 REMARK 500 1 VAL A 77 -29.35 178.85 REMARK 500 1 LYS A 93 -74.73 -109.40 REMARK 500 1 LYS A 94 134.28 131.40 REMARK 500 1 ASP A 96 -93.96 -54.99 REMARK 500 1 THR A 97 70.98 39.29 REMARK 500 1 PHE A 109 20.80 -155.88 REMARK 500 1 LYS A 117 158.60 64.20 REMARK 500 1 PRO A 118 -94.19 -40.52 REMARK 500 1 CYS A 120 140.17 -31.35 REMARK 500 1 ARG A 121 -81.96 -112.53 REMARK 500 1 CYS A 122 -161.82 43.70 REMARK 500 1 ALA A 123 31.63 -159.08 REMARK 500 1 LYS A 128 176.88 60.80 REMARK 500 2 ALA A 2 83.10 65.50 REMARK 500 2 ARG A 5 152.98 72.78 REMARK 500 2 ILE A 7 -179.41 -51.99 REMARK 500 2 ARG A 20 -27.39 86.60 REMARK 500 2 ARG A 21 123.62 60.75 REMARK 500 2 ASN A 23 67.96 -67.16 REMARK 500 2 ARG A 30 -41.19 -168.81 REMARK 500 2 ASP A 31 -154.66 85.85 REMARK 500 2 ILE A 40 90.23 -43.74 REMARK 500 2 SER A 43 -95.07 -104.51 REMARK 500 2 TYR A 46 -153.70 -154.52 REMARK 500 2 ALA A 47 -169.56 -164.84 REMARK 500 2 SER A 50 33.48 -148.83 REMARK 500 2 ASP A 52 32.67 -95.98 REMARK 500 2 VAL A 62 -30.14 85.32 REMARK 500 2 LYS A 65 72.78 -114.35 REMARK 500 REMARK 500 THIS ENTRY HAS 673 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 CYS A 120 SG 128.6 REMARK 620 3 CYS A 122 SG 115.4 86.8 REMARK 620 4 CYS A 127 SG 116.9 110.8 84.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6195 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGMENT DBREF 1T3K A 1 132 UNP Q8GY31 CDC25_ARATH 15 146 SEQADV 1T3K MET A -19 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K GLY A -18 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K SER A -17 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K SER A -16 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K HIS A -15 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K HIS A -14 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K HIS A -13 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K HIS A -12 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K HIS A -11 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K HIS A -10 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K SER A -9 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K SER A -8 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K GLY A -7 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K LEU A -6 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K VAL A -5 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K PRO A -4 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K ARG A -3 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K GLY A -2 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K SER A -1 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K HIS A 0 UNP Q8GY31 CLONING ARTIFACT SEQADV 1T3K SER A 72 UNP Q8GY31 CYS 86 ENGINEERED MUTATION SEQRES 1 A 152 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 152 LEU VAL PRO ARG GLY SER HIS MET ALA MET ALA ARG SER SEQRES 3 A 152 ILE SER TYR ILE THR SER THR GLN LEU LEU PRO LEU HIS SEQRES 4 A 152 ARG ARG PRO ASN ILE ALA ILE ILE ASP VAL ARG ASP GLU SEQRES 5 A 152 GLU ARG ASN TYR ASP GLY HIS ILE ALA GLY SER LEU HIS SEQRES 6 A 152 TYR ALA SER GLY SER PHE ASP ASP LYS ILE SER HIS LEU SEQRES 7 A 152 VAL GLN ASN VAL LYS ASP LYS ASP THR LEU VAL PHE HIS SEQRES 8 A 152 SER ALA LEU SER GLN VAL ARG GLY PRO THR CYS ALA ARG SEQRES 9 A 152 ARG LEU VAL ASN TYR LEU ASP GLU LYS LYS GLU ASP THR SEQRES 10 A 152 GLY ILE LYS ASN ILE MET ILE LEU GLU ARG GLY PHE ASN SEQRES 11 A 152 GLY TRP GLU ALA SER GLY LYS PRO VAL CYS ARG CYS ALA SEQRES 12 A 152 GLU VAL PRO CYS LYS GLY ASP CYS ALA HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLU A 32 ASP A 37 1 6 HELIX 2 2 LYS A 54 ASN A 61 1 8 HELIX 3 3 ARG A 78 LYS A 93 1 16 HELIX 4 4 PHE A 109 GLY A 116 1 8 SHEET 1 A 5 SER A 8 ILE A 10 0 SHEET 2 A 5 ASN A 101 LEU A 105 1 O ILE A 104 N ILE A 10 SHEET 3 A 5 THR A 67 PHE A 70 1 N LEU A 68 O ASN A 101 SHEET 4 A 5 ILE A 24 VAL A 29 1 N ALA A 25 O VAL A 69 SHEET 5 A 5 LEU A 44 TYR A 46 1 O LEU A 44 N ILE A 26 LINK ND1 HIS A 39 ZN ZN A 201 1555 1555 2.05 LINK SG CYS A 120 ZN ZN A 201 1555 1555 2.26 LINK SG CYS A 122 ZN ZN A 201 1555 1555 2.55 LINK SG CYS A 127 ZN ZN A 201 1555 1555 2.36 SITE 1 AC1 4 HIS A 39 CYS A 120 CYS A 122 CYS A 127 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1