HEADER HYDROLASE 05-MAY-04 1T64 TITLE CRYSTAL STRUCTURE OF HUMAN HDAC8 COMPLEXED WITH TRICHOSTATIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HDAC8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PSXB2; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTA KEYWDS HISTONE DEACETYLASE, ZINC HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.SOMOZA,R.J.SKENE,B.A.KATZ,C.MOL,J.D.HO,A.J.JENNINGS,C.LUONG, AUTHOR 2 A.ARVAI,J.J.BUGGY,E.CHI,J.TANG,B.-C.SANG,E.VERNER,R.WYNANDS, AUTHOR 3 E.M.LEAHY,D.R.DOUGAN,G.SNELL,M.NAVRE,M.W.KNUTH,R.V.SWANSON, AUTHOR 4 D.E.MCREE,L.W.TARI REVDAT 4 23-AUG-23 1T64 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1T64 1 VERSN REVDAT 2 24-FEB-09 1T64 1 VERSN REVDAT 1 27-JUL-04 1T64 0 JRNL AUTH J.R.SOMOZA,R.J.SKENE,B.A.KATZ,C.MOL,J.D.HO,A.J.JENNINGS, JRNL AUTH 2 C.LUONG,A.ARVAI,J.J.BUGGY,E.CHI,J.TANG,B.-C.SANG,E.VERNER, JRNL AUTH 3 R.WYNANDS,E.M.LEAHY,D.R.DOUGAN,G.SNELL,M.NAVRE,M.W.KNUTH, JRNL AUTH 4 R.V.SWANSON,D.E.MCREE,L.W.TARI JRNL TITL STRUCTURAL SNAPSHOTS OF HUMAN HDAC8 PROVIDE INSIGHTS INTO JRNL TITL 2 THE CLASS I HISTONE DEACETYLASES JRNL REF STRUCTURE V. 12 1325 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15242608 JRNL DOI 10.1016/J.STR.2004.04.012 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 54547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2908 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 684 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.631 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5819 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7905 ; 1.272 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 726 ; 8.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 861 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4501 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3313 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 655 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 23 ; 0.099 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3610 ; 0.471 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5793 ; 0.864 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2209 ; 1.497 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ; 2.367 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 14 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): 63.6580 65.5140 -0.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.0444 REMARK 3 T33: 0.0868 T12: 0.0142 REMARK 3 T13: 0.0579 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.4382 L22: 2.0572 REMARK 3 L33: 1.8989 L12: 0.0004 REMARK 3 L13: -0.6305 L23: -0.3110 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.0140 S13: -0.0925 REMARK 3 S21: -0.0454 S22: -0.0558 S23: 0.0183 REMARK 3 S31: -0.0185 S32: 0.0605 S33: 0.1226 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 377 REMARK 3 ORIGIN FOR THE GROUP (A): 102.2810 53.1760 21.1830 REMARK 3 T TENSOR REMARK 3 T11: 0.0461 T22: 0.2251 REMARK 3 T33: 0.0208 T12: 0.0218 REMARK 3 T13: 0.0102 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.6534 L22: 1.9199 REMARK 3 L33: 2.4929 L12: -0.2533 REMARK 3 L13: -0.6902 L23: 0.0650 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.1547 S13: 0.1226 REMARK 3 S21: 0.0599 S22: 0.0100 S23: -0.0880 REMARK 3 S31: -0.0937 S32: -0.5706 S33: -0.0855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54547 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 81.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : 0.54400 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1C3R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CALCIUM ACETATE, IMIDAZOLE, REMARK 280 PH 6.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.08900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.63350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.54450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 ALA B 8 REMARK 465 ASP B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 SER B 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 THR A 69 OG1 CG2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 ASP A 87 CB CG OD1 OD2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 ASP A 89 CB CG OD1 OD2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 VAL A 377 CB CG1 CG2 REMARK 470 LEU B 14 CG CD1 CD2 REMARK 470 LYS B 33 CB CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 THR B 69 OG1 CG2 REMARK 470 ASP B 87 CB CG OD1 OD2 REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 ASP B 89 CG OD1 OD2 REMARK 470 GLN B 293 CG CD OE1 NE2 REMARK 470 VAL B 377 CB CG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 90 CD2 REMARK 480 LEU A 155 CD2 REMARK 480 LYS A 168 NZ REMARK 480 LYS A 249 CE NZ REMARK 480 LYS A 286 CE NZ REMARK 480 LYS A 289 CD CE NZ REMARK 480 LYS A 325 NZ REMARK 480 LEU B 14 CB REMARK 480 LYS B 36 NZ REMARK 480 ALA B 49 CB REMARK 480 LYS B 249 CD CE NZ REMARK 480 LYS B 286 CE REMARK 480 LYS B 289 CD CE NZ REMARK 480 SER B 329 OG REMARK 480 THR B 338 CG2 REMARK 480 PRO B 342 CB REMARK 480 GLU B 347 CG CD REMARK 480 ILE B 348 CD1 REMARK 480 ARG B 353 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 366 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 727 O HOH B 1066 1.94 REMARK 500 O HOH B 728 O HOH B 966 1.98 REMARK 500 O HOH A 474 O HOH A 1048 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 90 CG HIS A 90 CD2 0.202 REMARK 500 HIS A 90 NE2 HIS A 90 CD2 0.332 REMARK 500 LEU A 155 CG LEU A 155 CD2 -0.437 REMARK 500 LYS A 168 CE LYS A 168 NZ 0.827 REMARK 500 LYS A 289 CG LYS A 289 CD -0.224 REMARK 500 LYS A 325 CE LYS A 325 NZ -0.703 REMARK 500 LYS B 36 CE LYS B 36 NZ -0.179 REMARK 500 ALA B 49 CA ALA B 49 CB 0.297 REMARK 500 LYS B 249 CG LYS B 249 CD 0.268 REMARK 500 LYS B 249 CD LYS B 249 CE 0.362 REMARK 500 LYS B 249 CE LYS B 249 NZ -0.151 REMARK 500 LYS B 286 CD LYS B 286 CE 0.171 REMARK 500 LYS B 286 CE LYS B 286 NZ 0.275 REMARK 500 SER B 329 CB SER B 329 OG 0.560 REMARK 500 GLU B 347 CB GLU B 347 CG -0.177 REMARK 500 GLU B 347 CD GLU B 347 OE1 0.545 REMARK 500 GLU B 347 CD GLU B 347 OE2 0.216 REMARK 500 LEU B 366 CG LEU B 366 CD2 -0.425 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 90 CB - CG - CD2 ANGL. DEV. = -13.1 DEGREES REMARK 500 HIS A 90 CG - CD2 - NE2 ANGL. DEV. = -21.8 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 147 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU A 155 CB - CG - CD2 ANGL. DEV. = 13.3 DEGREES REMARK 500 LYS A 168 CD - CE - NZ ANGL. DEV. = -24.1 DEGREES REMARK 500 LYS A 325 CD - CE - NZ ANGL. DEV. = 25.2 DEGREES REMARK 500 LEU B 14 N - CA - CB ANGL. DEV. = -24.7 DEGREES REMARK 500 ASP B 101 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 213 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LYS B 286 CD - CE - NZ ANGL. DEV. = 24.6 DEGREES REMARK 500 LYS B 289 CD - CE - NZ ANGL. DEV. = 14.5 DEGREES REMARK 500 THR B 338 OG1 - CB - CG2 ANGL. DEV. = 20.1 DEGREES REMARK 500 GLU B 347 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 GLU B 347 OE1 - CD - OE2 ANGL. DEV. = -25.5 DEGREES REMARK 500 PRO B 350 N - CD - CG ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG B 353 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 LEU B 366 CD1 - CG - CD2 ANGL. DEV. = 25.9 DEGREES REMARK 500 LEU B 366 CB - CG - CD1 ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 33 -27.47 69.20 REMARK 500 GLN A 84 -75.93 -77.24 REMARK 500 ASP A 87 -51.45 -160.70 REMARK 500 ASP A 89 -6.09 110.24 REMARK 500 PHE A 152 -0.40 76.60 REMARK 500 TYR A 224 2.89 83.44 REMARK 500 SER A 276 -74.59 -116.09 REMARK 500 PRO A 350 120.27 -19.04 REMARK 500 LYS B 33 -23.70 86.04 REMARK 500 PHE B 70 -51.41 -121.70 REMARK 500 ASP B 87 65.64 -64.50 REMARK 500 CYS B 102 74.15 -161.98 REMARK 500 TYR B 224 -1.67 88.53 REMARK 500 SER B 276 -71.67 -114.69 REMARK 500 HIS B 334 -165.52 -174.00 REMARK 500 PRO B 350 90.64 33.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 349 PRO A 350 133.45 REMARK 500 THR B 349 PRO B 350 82.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 90 0.16 SIDE CHAIN REMARK 500 GLU B 347 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 390 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 68 O REMARK 620 2 HOH A 842 O 95.9 REMARK 620 3 HOH A 843 O 93.0 82.0 REMARK 620 4 HOH A 844 O 88.3 87.6 169.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 392 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 176 OD1 REMARK 620 2 ASP A 176 O 72.4 REMARK 620 3 ASP A 178 O 110.7 112.2 REMARK 620 4 HIS A 180 O 86.6 156.6 84.5 REMARK 620 5 SER A 199 OG 90.8 81.6 156.9 88.7 REMARK 620 6 LEU A 200 O 150.4 78.2 77.2 123.0 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 388 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD2 REMARK 620 2 HIS A 180 ND1 105.8 REMARK 620 3 ASP A 267 OD2 104.4 98.8 REMARK 620 4 TSN A 386 O1 87.2 97.6 156.5 REMARK 620 5 TSN A 386 N1 111.9 86.7 140.2 25.1 REMARK 620 6 TSN A 386 O2 160.5 85.6 89.0 75.5 51.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 391 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 189 O REMARK 620 2 THR A 192 O 89.2 REMARK 620 3 VAL A 195 O 119.4 93.3 REMARK 620 4 HOH A 426 O 93.9 96.9 145.3 REMARK 620 5 HOH A 560 O 72.2 159.9 102.3 77.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 389 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 734 O REMARK 620 2 HOH A 735 O 81.1 REMARK 620 3 HOH A 736 O 120.1 72.5 REMARK 620 4 HOH A 737 O 143.0 84.1 86.8 REMARK 620 5 HOH A 738 O 65.5 104.6 70.7 151.5 REMARK 620 6 HOH A 739 O 78.7 151.1 136.0 99.9 85.5 REMARK 620 7 HOH A 741 O 119.6 146.7 74.5 90.4 67.3 62.2 REMARK 620 8 HOH A1040 O 77.8 76.2 140.0 65.7 142.5 79.5 130.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1390 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 68 O REMARK 620 2 HOH B 676 O 93.1 REMARK 620 3 HOH B 771 O 84.0 157.2 REMARK 620 4 HOH B 783 O 79.5 73.0 84.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1391 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 176 OD1 REMARK 620 2 ASP B 176 O 75.6 REMARK 620 3 ASP B 178 O 108.1 110.2 REMARK 620 4 HIS B 180 O 85.4 159.3 83.3 REMARK 620 5 SER B 199 OG 93.6 84.5 156.1 88.6 REMARK 620 6 LEU B 200 O 153.7 79.2 74.0 120.6 91.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1388 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 178 OD2 REMARK 620 2 HIS B 180 ND1 102.8 REMARK 620 3 ASP B 267 OD2 108.0 98.9 REMARK 620 4 TSN B1386 O1 88.4 101.7 150.1 REMARK 620 5 TSN B1386 O2 161.1 85.5 87.1 73.2 REMARK 620 6 TSN B1386 N1 111.5 88.8 136.9 24.3 51.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1392 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 189 O REMARK 620 2 THR B 192 O 93.1 REMARK 620 3 VAL B 195 O 118.0 91.9 REMARK 620 4 HOH B 439 O 93.8 96.9 146.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1389 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 725 O REMARK 620 2 HOH B 726 O 76.8 REMARK 620 3 HOH B 727 O 86.9 84.9 REMARK 620 4 HOH B 728 O 148.1 75.6 75.1 REMARK 620 5 HOH B 729 O 143.5 139.1 90.3 64.0 REMARK 620 6 HOH B 730 O 63.6 139.0 102.3 145.4 81.7 REMARK 620 7 HOH B 731 O 73.6 98.3 158.9 126.0 100.4 61.9 REMARK 620 8 HOH B 732 O 125.4 75.2 135.1 61.3 80.2 119.2 65.3 REMARK 620 9 HOH B 966 O 120.5 72.9 41.0 34.5 77.0 136.3 159.5 94.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1391 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1392 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TSN A 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TSN A 387 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TSN B 1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TSN B 1387 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T64 RELATED DB: PDB REMARK 900 RELATED ID: 1T67 RELATED DB: PDB DBREF 1T64 A 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 1T64 B 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 SEQADV 1T64 LEU A 31 UNP Q9BY41 PRO 31 CONFLICT SEQADV 1T64 LEU B 31 UNP Q9BY41 PRO 31 CONFLICT SEQRES 1 A 377 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 A 377 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 A 377 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 A 377 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 A 377 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 A 377 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 A 377 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 A 377 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 A 377 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 A 377 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 A 377 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 A 377 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 A 377 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 A 377 GLU ARG ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY SEQRES 15 A 377 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 A 377 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 A 377 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 A 377 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY SEQRES 19 A 377 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 A 377 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 A 377 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 A 377 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 A 377 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 A 377 ILE LEU GLY GLY GLY GLY TYR ASN LEU ALA ASN THR ALA SEQRES 25 A 377 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 A 377 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 A 377 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 A 377 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 A 377 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL SEQRES 1 B 377 MET GLU GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER SEQRES 2 B 377 LEU VAL PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER SEQRES 3 B 377 MET CYS ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER SEQRES 4 B 377 MET VAL HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS SEQRES 5 B 377 GLN MET ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU SEQRES 6 B 377 GLU MET ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS SEQRES 7 B 377 LEU GLN LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO SEQRES 8 B 377 ASP SER ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA SEQRES 9 B 377 THR GLU GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY SEQRES 10 B 377 ALA THR ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET SEQRES 11 B 377 CYS LYS VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS SEQRES 12 B 377 ALA LYS LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN SEQRES 13 B 377 ASP ALA VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE SEQRES 14 B 377 GLU ARG ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY SEQRES 15 B 377 ASP GLY VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL SEQRES 16 B 377 MET THR VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE SEQRES 17 B 377 PRO GLY THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS SEQRES 18 B 377 GLY ARG TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY SEQRES 19 B 377 ILE GLN ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL SEQRES 20 B 377 LEU LYS GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL SEQRES 21 B 377 VAL LEU GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO SEQRES 22 B 377 MET CYS SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS SEQRES 23 B 377 CYS LEU LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU SEQRES 24 B 377 ILE LEU GLY GLY GLY GLY TYR ASN LEU ALA ASN THR ALA SEQRES 25 B 377 ARG CYS TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS SEQRES 26 B 377 THR LEU SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR SEQRES 27 B 377 ALA TYR GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER SEQRES 28 B 377 CYS ARG PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN SEQRES 29 B 377 ILE LEU ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL HET ZN A 388 1 HET CA A 389 1 HET CA A 390 1 HET NA A 391 1 HET NA A 392 1 HET TSN A 386 22 HET TSN A 387 22 HET ZN B1388 1 HET CA B1389 1 HET CA B1390 1 HET NA B1391 1 HET NA B1392 1 HET TSN B1386 22 HET TSN B1387 22 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM TSN TRICHOSTATIN A HETSYN TSN 7-[4-(DIMETHYLAMINO)PHENYL]-N-HYDROXY-4,6-DIMETHYL-7- HETSYN 2 TSN OXO-2,4-HEPTADIENAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 4(CA 2+) FORMUL 6 NA 4(NA 1+) FORMUL 8 TSN 4(C17 H22 N2 O3) FORMUL 17 HOH *684(H2 O) HELIX 1 1 SER A 21 ASP A 29 1 9 HELIX 2 2 LYS A 36 TYR A 48 1 13 HELIX 3 3 ALA A 49 MET A 54 5 6 HELIX 4 4 SER A 63 ALA A 68 1 6 HELIX 5 5 THR A 72 GLY A 86 1 15 HELIX 6 6 GLY A 107 ASP A 128 1 22 HELIX 7 7 ASN A 156 ARG A 166 1 11 HELIX 8 8 GLY A 182 SER A 190 1 9 HELIX 9 9 LEU A 219 ARG A 223 5 5 HELIX 10 10 GLN A 236 ASN A 256 1 21 HELIX 11 11 THR A 280 GLN A 293 1 14 HELIX 12 12 ASN A 307 GLY A 324 1 18 HELIX 13 13 PHE A 336 GLY A 341 5 6 HELIX 14 14 GLU A 358 LYS A 374 1 17 HELIX 15 15 SER B 21 ASP B 29 1 9 HELIX 16 16 LYS B 36 TYR B 48 1 13 HELIX 17 17 ALA B 49 MET B 54 5 6 HELIX 18 18 SER B 63 ALA B 68 1 6 HELIX 19 19 THR B 72 GLY B 86 1 15 HELIX 20 20 GLY B 107 ASP B 128 1 22 HELIX 21 21 ASN B 156 ARG B 166 1 11 HELIX 22 22 GLY B 182 SER B 190 1 9 HELIX 23 23 LEU B 219 ARG B 223 5 5 HELIX 24 24 GLN B 236 ASN B 256 1 21 HELIX 25 25 THR B 280 GLN B 293 1 14 HELIX 26 26 ASN B 307 GLY B 324 1 18 HELIX 27 27 PHE B 336 GLY B 341 5 6 HELIX 28 28 GLU B 358 LYS B 374 1 17 SHEET 1 A 8 ARG A 55 VAL A 57 0 SHEET 2 A 8 VAL A 17 ILE A 19 1 N TYR A 18 O VAL A 57 SHEET 3 A 8 VAL A 133 ASN A 136 1 O VAL A 133 N VAL A 17 SHEET 4 A 8 ALA A 297 LEU A 301 1 O ILE A 300 N ASN A 136 SHEET 5 A 8 ALA A 259 GLN A 263 1 N VAL A 260 O LEU A 299 SHEET 6 A 8 ILE A 172 ASP A 176 1 N VAL A 175 O GLN A 263 SHEET 7 A 8 VAL A 195 LYS A 202 1 O MET A 196 N TYR A 174 SHEET 8 A 8 SER A 226 ILE A 231 1 O VAL A 229 N SER A 199 SHEET 1 B 8 ARG B 55 VAL B 57 0 SHEET 2 B 8 VAL B 17 ILE B 19 1 N TYR B 18 O ARG B 55 SHEET 3 B 8 VAL B 133 ASN B 136 1 O ILE B 135 N ILE B 19 SHEET 4 B 8 ALA B 297 LEU B 301 1 O ILE B 300 N ASN B 136 SHEET 5 B 8 ALA B 259 GLN B 263 1 N LEU B 262 O LEU B 299 SHEET 6 B 8 ILE B 172 ASP B 176 1 N VAL B 175 O GLN B 263 SHEET 7 B 8 VAL B 195 LYS B 202 1 O VAL B 198 N ASP B 176 SHEET 8 B 8 SER B 226 ILE B 231 1 O VAL B 227 N THR B 197 LINK O ALA A 68 CA CA A 390 1555 1555 2.52 LINK OD1 ASP A 176 NA NA A 392 1555 1555 2.53 LINK O ASP A 176 NA NA A 392 1555 1555 2.74 LINK OD2 ASP A 178 ZN ZN A 388 1555 1555 1.97 LINK O ASP A 178 NA NA A 392 1555 1555 2.34 LINK ND1 HIS A 180 ZN ZN A 388 1555 1555 2.15 LINK O HIS A 180 NA NA A 392 1555 1555 2.60 LINK O PHE A 189 NA NA A 391 1555 1555 2.31 LINK O THR A 192 NA NA A 391 1555 1555 2.41 LINK O VAL A 195 NA NA A 391 1555 1555 2.30 LINK OG SER A 199 NA NA A 392 1555 1555 2.96 LINK O LEU A 200 NA NA A 392 1555 1555 2.37 LINK OD2 ASP A 267 ZN ZN A 388 1555 1555 1.94 LINK O1 TSN A 386 ZN ZN A 388 1555 1555 2.00 LINK N1 TSN A 386 ZN ZN A 388 1555 1555 2.73 LINK O2 TSN A 386 ZN ZN A 388 1555 1555 2.22 LINK CA CA A 389 O HOH A 734 1555 1555 2.46 LINK CA CA A 389 O HOH A 735 1555 1555 2.41 LINK CA CA A 389 O HOH A 736 1555 1555 2.47 LINK CA CA A 389 O HOH A 737 1555 1555 2.37 LINK CA CA A 389 O HOH A 738 1555 1555 2.42 LINK CA CA A 389 O HOH A 739 1555 1555 2.41 LINK CA CA A 389 O HOH A 741 1555 1555 2.55 LINK CA CA A 389 O HOH A1040 1555 1555 2.36 LINK CA CA A 390 O HOH A 842 1555 1555 2.19 LINK CA CA A 390 O HOH A 843 1555 1555 2.45 LINK CA CA A 390 O HOH A 844 1555 1555 2.41 LINK NA NA A 391 O HOH A 426 1555 1555 2.32 LINK NA NA A 391 O HOH A 560 1555 1555 2.87 LINK O ALA B 68 CA CA B1390 1555 1555 2.46 LINK OD1 ASP B 176 NA NA B1391 1555 1555 2.56 LINK O ASP B 176 NA NA B1391 1555 1555 2.74 LINK OD2 ASP B 178 ZN ZN B1388 1555 1555 2.02 LINK O ASP B 178 NA NA B1391 1555 1555 2.43 LINK ND1 HIS B 180 ZN ZN B1388 1555 1555 2.10 LINK O HIS B 180 NA NA B1391 1555 1555 2.64 LINK O PHE B 189 NA NA B1392 1555 1555 2.24 LINK O THR B 192 NA NA B1392 1555 1555 2.38 LINK O VAL B 195 NA NA B1392 1555 1555 2.32 LINK OG SER B 199 NA NA B1391 1555 1555 2.86 LINK O LEU B 200 NA NA B1391 1555 1555 2.43 LINK OD2 ASP B 267 ZN ZN B1388 1555 1555 1.98 LINK O HOH B 439 NA NA B1392 1555 1555 2.15 LINK O HOH B 676 CA CA B1390 1555 1555 2.33 LINK O HOH B 725 CA CA B1389 3744 1555 2.56 LINK O HOH B 726 CA CA B1389 3744 1555 2.37 LINK O HOH B 727 CA CA B1389 3744 1555 2.46 LINK O HOH B 728 CA CA B1389 3744 1555 2.33 LINK O HOH B 729 CA CA B1389 3744 1555 2.57 LINK O HOH B 730 CA CA B1389 3744 1555 2.54 LINK O HOH B 731 CA CA B1389 3744 1555 2.38 LINK O HOH B 732 CA CA B1389 3744 1555 2.46 LINK O HOH B 771 CA CA B1390 1555 1555 2.43 LINK O HOH B 783 CA CA B1390 1555 1555 2.37 LINK O HOH B 966 CA CA B1389 3744 1555 3.40 LINK O HOH B1066 CA CA B1389 3744 1555 2.75 LINK O1 TSN B1386 ZN ZN B1388 1555 1555 2.04 LINK O2 TSN B1386 ZN ZN B1388 1555 1555 2.32 LINK N1 TSN B1386 ZN ZN B1388 1555 1555 2.78 CISPEP 1 PHE A 208 PRO A 209 0 -8.03 CISPEP 2 GLY A 341 PRO A 342 0 3.41 CISPEP 3 VAL A 376 VAL A 377 0 -3.39 CISPEP 4 PHE B 208 PRO B 209 0 -5.34 CISPEP 5 GLY B 341 PRO B 342 0 1.01 CISPEP 6 VAL B 376 VAL B 377 0 -5.28 SITE 1 AC1 4 ASP A 178 HIS A 180 ASP A 267 TSN A 386 SITE 1 AC2 8 HOH A 734 HOH A 735 HOH A 736 HOH A 737 SITE 2 AC2 8 HOH A 738 HOH A 739 HOH A 741 HOH A1040 SITE 1 AC3 4 ALA A 68 HOH A 842 HOH A 843 HOH A 844 SITE 1 AC4 6 PHE A 189 THR A 192 VAL A 195 TYR A 225 SITE 2 AC4 6 HOH A 426 HOH A 560 SITE 1 AC5 5 ASP A 176 ASP A 178 HIS A 180 SER A 199 SITE 2 AC5 5 LEU A 200 SITE 1 AC6 4 ASP B 178 HIS B 180 ASP B 267 TSN B1386 SITE 1 AC7 9 HOH B 725 HOH B 726 HOH B 727 HOH B 728 SITE 2 AC7 9 HOH B 729 HOH B 730 HOH B 731 HOH B 732 SITE 3 AC7 9 HOH B1066 SITE 1 AC8 4 ALA B 68 HOH B 676 HOH B 771 HOH B 783 SITE 1 AC9 5 ASP B 176 ASP B 178 HIS B 180 SER B 199 SITE 2 AC9 5 LEU B 200 SITE 1 BC1 5 PHE B 189 THR B 192 VAL B 195 TYR B 225 SITE 2 BC1 5 HOH B 439 SITE 1 BC2 13 TYR A 100 HIS A 142 HIS A 143 GLY A 151 SITE 2 BC2 13 PHE A 152 ASP A 178 HIS A 180 ASP A 267 SITE 3 BC2 13 MET A 274 TYR A 306 TSN A 387 ZN A 388 SITE 4 BC2 13 HOH A 657 SITE 1 BC3 10 ILE A 34 PRO A 35 TYR A 111 TRP A 141 SITE 2 BC3 10 PRO A 273 TYR A 306 TSN A 386 HOH A 657 SITE 3 BC3 10 HOH A 661 HOH A 992 SITE 1 BC4 11 TYR B 100 HIS B 142 HIS B 143 GLY B 151 SITE 2 BC4 11 PHE B 152 ASP B 178 HIS B 180 ASP B 267 SITE 3 BC4 11 TYR B 306 TSN B1387 ZN B1388 SITE 1 BC5 10 ILE B 34 PRO B 35 TYR B 111 TRP B 141 SITE 2 BC5 10 PHE B 152 PRO B 273 TYR B 306 HOH B 541 SITE 3 BC5 10 HOH B 581 TSN B1386 CRYST1 81.014 81.014 114.178 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008758 0.00000