data_1T6I # _entry.id 1T6I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1T6I pdb_00001t6i 10.2210/pdb1t6i/pdb RCSB RCSB022373 ? ? WWPDB D_1000022373 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1T6I _pdbx_database_status.recvd_initial_deposition_date 2004-05-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barondeau, D.P.' 1 'Kassmann, C.J.' 2 'Bruns, C.K.' 3 'Tainer, J.A.' 4 'Getzoff, E.D.' 5 # _citation.id primary _citation.title 'Nickel superoxide dismutase structure and mechanism.' _citation.journal_abbrev Biochemistry _citation.journal_volume 43 _citation.page_first 8038 _citation.page_last 8047 _citation.year 2004 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15209499 _citation.pdbx_database_id_DOI 10.1021/bi0496081 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barondeau, D.P.' 1 ? primary 'Kassmann, C.J.' 2 ? primary 'Bruns, C.K.' 3 ? primary 'Tainer, J.A.' 4 ? primary 'Getzoff, E.D.' 5 ? # _cell.entry_id 1T6I _cell.length_a 60.430 _cell.length_b 110.241 _cell.length_c 110.659 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1T6I _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Superoxide dismutase [Ni]' 13512.885 3 1.15.1.1 L85M ? ? 2 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NiSOD, Nickel- containing superoxide dismutase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HCDLPCGVYDPAQARIEAESVKAVQEK(MSE)AGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKY PELHQLVNDTLKA(MSE)SAAKGSKDPATGQKALDYIAQIDKIFWETKKA ; _entity_poly.pdbx_seq_one_letter_code_can ;MHCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVN DTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKKA ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 CYS n 1 4 ASP n 1 5 LEU n 1 6 PRO n 1 7 CYS n 1 8 GLY n 1 9 VAL n 1 10 TYR n 1 11 ASP n 1 12 PRO n 1 13 ALA n 1 14 GLN n 1 15 ALA n 1 16 ARG n 1 17 ILE n 1 18 GLU n 1 19 ALA n 1 20 GLU n 1 21 SER n 1 22 VAL n 1 23 LYS n 1 24 ALA n 1 25 VAL n 1 26 GLN n 1 27 GLU n 1 28 LYS n 1 29 MSE n 1 30 ALA n 1 31 GLY n 1 32 ASN n 1 33 ASP n 1 34 ASP n 1 35 PRO n 1 36 HIS n 1 37 PHE n 1 38 GLN n 1 39 THR n 1 40 ARG n 1 41 ALA n 1 42 THR n 1 43 VAL n 1 44 ILE n 1 45 LYS n 1 46 GLU n 1 47 GLN n 1 48 ARG n 1 49 ALA n 1 50 GLU n 1 51 LEU n 1 52 ALA n 1 53 LYS n 1 54 HIS n 1 55 HIS n 1 56 VAL n 1 57 SER n 1 58 VAL n 1 59 LEU n 1 60 TRP n 1 61 SER n 1 62 ASP n 1 63 TYR n 1 64 PHE n 1 65 LYS n 1 66 PRO n 1 67 PRO n 1 68 HIS n 1 69 PHE n 1 70 GLU n 1 71 LYS n 1 72 TYR n 1 73 PRO n 1 74 GLU n 1 75 LEU n 1 76 HIS n 1 77 GLN n 1 78 LEU n 1 79 VAL n 1 80 ASN n 1 81 ASP n 1 82 THR n 1 83 LEU n 1 84 LYS n 1 85 ALA n 1 86 MSE n 1 87 SER n 1 88 ALA n 1 89 ALA n 1 90 LYS n 1 91 GLY n 1 92 SER n 1 93 LYS n 1 94 ASP n 1 95 PRO n 1 96 ALA n 1 97 THR n 1 98 GLY n 1 99 GLN n 1 100 LYS n 1 101 ALA n 1 102 LEU n 1 103 ASP n 1 104 TYR n 1 105 ILE n 1 106 ALA n 1 107 GLN n 1 108 ILE n 1 109 ASP n 1 110 LYS n 1 111 ILE n 1 112 PHE n 1 113 TRP n 1 114 GLU n 1 115 THR n 1 116 LYS n 1 117 LYS n 1 118 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptomyces _entity_src_gen.pdbx_gene_src_gene 'SODN, SOD1, SCO5254, 2SC7G11.16C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces coelicolor' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1902 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SODN_STRCO _struct_ref.pdbx_db_accession P80735 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVND TLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA ; _struct_ref.pdbx_align_begin 15 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1T6I A 2 ? 118 ? P80735 15 ? 131 ? 1 117 2 1 1T6I B 2 ? 118 ? P80735 15 ? 131 ? 1 117 3 1 1T6I C 2 ? 118 ? P80735 15 ? 131 ? 1 117 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1T6I MSE A 1 ? UNP P80735 ? ? 'initiating methionine' 0 1 1 1T6I MSE A 29 ? UNP P80735 MET 42 'modified residue' 28 2 1 1T6I MSE A 86 ? UNP P80735 LEU 99 'engineered mutation' 85 3 2 1T6I MSE B 1 ? UNP P80735 ? ? 'initiating methionine' 0 4 2 1T6I MSE B 29 ? UNP P80735 MET 42 'modified residue' 28 5 2 1T6I MSE B 86 ? UNP P80735 LEU 99 'engineered mutation' 85 6 3 1T6I MSE C 1 ? UNP P80735 ? ? 'initiating methionine' 0 7 3 1T6I MSE C 29 ? UNP P80735 MET 42 'modified residue' 28 8 3 1T6I MSE C 86 ? UNP P80735 LEU 99 'engineered mutation' 85 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1T6I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47 _exptl_crystal.description ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details 'MPEG 2000, Hepes, methanol, calcium chloride, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-06-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.911656 1.0 2 0.97912 1.0 3 0.979311 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.911656, 0.97912, 0.979311' # _reflns.entry_id 1T6I _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.80 _reflns.number_obs 9300 _reflns.number_all 9300 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.059 _reflns.pdbx_netI_over_sigmaI 22.4 _reflns.B_iso_Wilson_estimate 63 _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.267 _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 912 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1T6I _refine.ls_number_reflns_obs 8940 _refine.ls_number_reflns_all 9288 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 309608.65 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF 309608.65 _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.81 _refine.ls_percent_reflns_obs 95.9 _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.292 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.4 _refine.ls_number_reflns_R_free 927 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47.0 _refine.aniso_B[1][1] -22.36 _refine.aniso_B[2][2] -5.57 _refine.aniso_B[3][3] 27.93 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.289707 _refine.solvent_model_param_bsol 10 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1T6I _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.41 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.47 _refine_analyze.Luzzati_sigma_a_free 0.48 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2647 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 2669 _refine_hist.d_res_high 2.81 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.13 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.38 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 20.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.55 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.18 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.01 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.65 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.52 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.81 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1177 _refine_ls_shell.R_factor_R_work 0.347 _refine_ls_shell.percent_reflns_obs 84.0 _refine_ls_shell.R_factor_R_free 0.406 _refine_ls_shell.R_factor_R_free_error 0.038 _refine_ls_shell.percent_reflns_R_free 8.8 _refine_ls_shell.number_reflns_R_free 113 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER.PARAM WAT.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1T6I _struct.title 'Nickel Superoxide Dismutase (NiSOD) Apo Structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1T6I _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'Nickel, 4-helix bundle, hexamer, superoxide dismutase, NiSOD, SOD, apo, oxidoreductase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a hexamer generated from the trimer in the asymmetric unit by the operation -x,y,-z+1/2 ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? ASN A 32 ? PRO A 11 ASN A 31 1 ? 21 HELX_P HELX_P2 2 ASP A 34 ? ASP A 62 ? ASP A 33 ASP A 61 1 ? 29 HELX_P HELX_P3 3 LYS A 65 ? TYR A 72 ? LYS A 64 TYR A 71 1 ? 8 HELX_P HELX_P4 4 GLU A 74 ? SER A 92 ? GLU A 73 SER A 91 1 ? 19 HELX_P HELX_P5 5 ASP A 94 ? LYS A 116 ? ASP A 93 LYS A 115 1 ? 23 HELX_P HELX_P6 6 PRO B 12 ? MSE B 29 ? PRO B 11 MSE B 28 1 ? 18 HELX_P HELX_P7 7 ASP B 34 ? TYR B 63 ? ASP B 33 TYR B 62 1 ? 30 HELX_P HELX_P8 8 LYS B 65 ? TYR B 72 ? LYS B 64 TYR B 71 1 ? 8 HELX_P HELX_P9 9 GLU B 74 ? GLY B 91 ? GLU B 73 GLY B 90 1 ? 18 HELX_P HELX_P10 10 ASP B 94 ? ALA B 118 ? ASP B 93 ALA B 117 1 ? 25 HELX_P HELX_P11 11 PRO C 12 ? GLY C 31 ? PRO C 11 GLY C 30 1 ? 20 HELX_P HELX_P12 12 ASP C 34 ? TYR C 63 ? ASP C 33 TYR C 62 1 ? 30 HELX_P HELX_P13 13 LYS C 65 ? TYR C 72 ? LYS C 64 TYR C 71 1 ? 8 HELX_P HELX_P14 14 GLU C 74 ? GLY C 91 ? GLU C 73 GLY C 90 1 ? 18 HELX_P HELX_P15 15 ASP C 94 ? GLU C 114 ? ASP C 93 GLU C 113 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 28 C ? ? ? 1_555 A MSE 29 N ? ? A LYS 27 A MSE 28 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MSE 29 C ? ? ? 1_555 A ALA 30 N ? ? A MSE 28 A ALA 29 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? A ALA 85 C ? ? ? 1_555 A MSE 86 N ? ? A ALA 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale4 covale both ? A MSE 86 C ? ? ? 1_555 A SER 87 N ? ? A MSE 85 A SER 86 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale5 covale both ? B LYS 28 C ? ? ? 1_555 B MSE 29 N ? ? B LYS 27 B MSE 28 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? B MSE 29 C ? ? ? 1_555 B ALA 30 N ? ? B MSE 28 B ALA 29 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? B ALA 85 C ? ? ? 1_555 B MSE 86 N ? ? B ALA 84 B MSE 85 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale8 covale both ? B MSE 86 C ? ? ? 1_555 B SER 87 N ? ? B MSE 85 B SER 86 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale9 covale both ? C LYS 28 C ? ? ? 1_555 C MSE 29 N ? ? C LYS 27 C MSE 28 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale10 covale both ? C MSE 29 C ? ? ? 1_555 C ALA 30 N ? ? C MSE 28 C ALA 29 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale11 covale both ? C ALA 85 C ? ? ? 1_555 C MSE 86 N ? ? C ALA 84 C MSE 85 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale12 covale both ? C MSE 86 C ? ? ? 1_555 C SER 87 N ? ? C MSE 85 C SER 86 1_555 ? ? ? ? ? ? ? 1.335 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1T6I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1T6I _atom_sites.fract_transf_matrix[1][1] 0.016548 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009071 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009037 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 0 ? ? ? A . n A 1 2 HIS 2 1 ? ? ? A . n A 1 3 CYS 3 2 ? ? ? A . n A 1 4 ASP 4 3 ? ? ? A . n A 1 5 LEU 5 4 ? ? ? A . n A 1 6 PRO 6 5 ? ? ? A . n A 1 7 CYS 7 6 ? ? ? A . n A 1 8 GLY 8 7 7 GLY GLY A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 TYR 10 9 9 TYR TYR A . n A 1 11 ASP 11 10 10 ASP ASP A . n A 1 12 PRO 12 11 11 PRO PRO A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 GLN 14 13 13 GLN GLN A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 VAL 22 21 21 VAL VAL A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 VAL 25 24 24 VAL VAL A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 MSE 29 28 28 MSE MSE A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 GLY 31 30 30 GLY GLY A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 HIS 36 35 35 HIS HIS A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 THR 39 38 38 THR THR A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 ILE 44 43 43 ILE ILE A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 GLN 47 46 46 GLN GLN A . n A 1 48 ARG 48 47 47 ARG ARG A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 HIS 55 54 54 HIS HIS A . n A 1 56 VAL 56 55 55 VAL VAL A . n A 1 57 SER 57 56 56 SER SER A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 LEU 59 58 58 LEU LEU A . n A 1 60 TRP 60 59 59 TRP TRP A . n A 1 61 SER 61 60 60 SER SER A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 TYR 63 62 62 TYR TYR A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 PRO 66 65 65 PRO PRO A . n A 1 67 PRO 67 66 66 PRO PRO A . n A 1 68 HIS 68 67 67 HIS HIS A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 GLU 74 73 73 GLU GLU A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 HIS 76 75 75 HIS HIS A . n A 1 77 GLN 77 76 76 GLN GLN A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 THR 82 81 81 THR THR A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 MSE 86 85 85 MSE MSE A . n A 1 87 SER 87 86 86 SER SER A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 GLY 91 90 90 GLY GLY A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 LYS 93 92 92 LYS LYS A . n A 1 94 ASP 94 93 93 ASP ASP A . n A 1 95 PRO 95 94 94 PRO PRO A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 THR 97 96 96 THR THR A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 LYS 100 99 99 LYS LYS A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 TYR 104 103 103 TYR TYR A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ALA 106 105 105 ALA ALA A . n A 1 107 GLN 107 106 106 GLN GLN A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 LYS 110 109 109 LYS LYS A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 PHE 112 111 111 PHE PHE A . n A 1 113 TRP 113 112 112 TRP TRP A . n A 1 114 GLU 114 113 113 GLU GLU A . n A 1 115 THR 115 114 114 THR THR A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 ALA 118 117 117 ALA ALA A . n B 1 1 MSE 1 0 ? ? ? B . n B 1 2 HIS 2 1 ? ? ? B . n B 1 3 CYS 3 2 ? ? ? B . n B 1 4 ASP 4 3 ? ? ? B . n B 1 5 LEU 5 4 ? ? ? B . n B 1 6 PRO 6 5 ? ? ? B . n B 1 7 CYS 7 6 ? ? ? B . n B 1 8 GLY 8 7 ? ? ? B . n B 1 9 VAL 9 8 8 VAL VAL B . n B 1 10 TYR 10 9 9 TYR TYR B . n B 1 11 ASP 11 10 10 ASP ASP B . n B 1 12 PRO 12 11 11 PRO PRO B . n B 1 13 ALA 13 12 12 ALA ALA B . n B 1 14 GLN 14 13 13 GLN GLN B . n B 1 15 ALA 15 14 14 ALA ALA B . n B 1 16 ARG 16 15 15 ARG ARG B . n B 1 17 ILE 17 16 16 ILE ILE B . n B 1 18 GLU 18 17 17 GLU GLU B . n B 1 19 ALA 19 18 18 ALA ALA B . n B 1 20 GLU 20 19 19 GLU GLU B . n B 1 21 SER 21 20 20 SER SER B . n B 1 22 VAL 22 21 21 VAL VAL B . n B 1 23 LYS 23 22 22 LYS LYS B . n B 1 24 ALA 24 23 23 ALA ALA B . n B 1 25 VAL 25 24 24 VAL VAL B . n B 1 26 GLN 26 25 25 GLN GLN B . n B 1 27 GLU 27 26 26 GLU GLU B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 MSE 29 28 28 MSE MSE B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 GLY 31 30 30 GLY GLY B . n B 1 32 ASN 32 31 31 ASN ASN B . n B 1 33 ASP 33 32 32 ASP ASP B . n B 1 34 ASP 34 33 33 ASP ASP B . n B 1 35 PRO 35 34 34 PRO PRO B . n B 1 36 HIS 36 35 35 HIS HIS B . n B 1 37 PHE 37 36 36 PHE PHE B . n B 1 38 GLN 38 37 37 GLN GLN B . n B 1 39 THR 39 38 38 THR THR B . n B 1 40 ARG 40 39 39 ARG ARG B . n B 1 41 ALA 41 40 40 ALA ALA B . n B 1 42 THR 42 41 41 THR THR B . n B 1 43 VAL 43 42 42 VAL VAL B . n B 1 44 ILE 44 43 43 ILE ILE B . n B 1 45 LYS 45 44 44 LYS LYS B . n B 1 46 GLU 46 45 45 GLU GLU B . n B 1 47 GLN 47 46 46 GLN GLN B . n B 1 48 ARG 48 47 47 ARG ARG B . n B 1 49 ALA 49 48 48 ALA ALA B . n B 1 50 GLU 50 49 49 GLU GLU B . n B 1 51 LEU 51 50 50 LEU LEU B . n B 1 52 ALA 52 51 51 ALA ALA B . n B 1 53 LYS 53 52 52 LYS LYS B . n B 1 54 HIS 54 53 53 HIS HIS B . n B 1 55 HIS 55 54 54 HIS HIS B . n B 1 56 VAL 56 55 55 VAL VAL B . n B 1 57 SER 57 56 56 SER SER B . n B 1 58 VAL 58 57 57 VAL VAL B . n B 1 59 LEU 59 58 58 LEU LEU B . n B 1 60 TRP 60 59 59 TRP TRP B . n B 1 61 SER 61 60 60 SER SER B . n B 1 62 ASP 62 61 61 ASP ASP B . n B 1 63 TYR 63 62 62 TYR TYR B . n B 1 64 PHE 64 63 63 PHE PHE B . n B 1 65 LYS 65 64 64 LYS LYS B . n B 1 66 PRO 66 65 65 PRO PRO B . n B 1 67 PRO 67 66 66 PRO PRO B . n B 1 68 HIS 68 67 67 HIS HIS B . n B 1 69 PHE 69 68 68 PHE PHE B . n B 1 70 GLU 70 69 69 GLU GLU B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 TYR 72 71 71 TYR TYR B . n B 1 73 PRO 73 72 72 PRO PRO B . n B 1 74 GLU 74 73 73 GLU GLU B . n B 1 75 LEU 75 74 74 LEU LEU B . n B 1 76 HIS 76 75 75 HIS HIS B . n B 1 77 GLN 77 76 76 GLN GLN B . n B 1 78 LEU 78 77 77 LEU LEU B . n B 1 79 VAL 79 78 78 VAL VAL B . n B 1 80 ASN 80 79 79 ASN ASN B . n B 1 81 ASP 81 80 80 ASP ASP B . n B 1 82 THR 82 81 81 THR THR B . n B 1 83 LEU 83 82 82 LEU LEU B . n B 1 84 LYS 84 83 83 LYS LYS B . n B 1 85 ALA 85 84 84 ALA ALA B . n B 1 86 MSE 86 85 85 MSE MSE B . n B 1 87 SER 87 86 86 SER SER B . n B 1 88 ALA 88 87 87 ALA ALA B . n B 1 89 ALA 89 88 88 ALA ALA B . n B 1 90 LYS 90 89 89 LYS LYS B . n B 1 91 GLY 91 90 90 GLY GLY B . n B 1 92 SER 92 91 91 SER SER B . n B 1 93 LYS 93 92 92 LYS LYS B . n B 1 94 ASP 94 93 93 ASP ASP B . n B 1 95 PRO 95 94 94 PRO PRO B . n B 1 96 ALA 96 95 95 ALA ALA B . n B 1 97 THR 97 96 96 THR THR B . n B 1 98 GLY 98 97 97 GLY GLY B . n B 1 99 GLN 99 98 98 GLN GLN B . n B 1 100 LYS 100 99 99 LYS LYS B . n B 1 101 ALA 101 100 100 ALA ALA B . n B 1 102 LEU 102 101 101 LEU LEU B . n B 1 103 ASP 103 102 102 ASP ASP B . n B 1 104 TYR 104 103 103 TYR TYR B . n B 1 105 ILE 105 104 104 ILE ILE B . n B 1 106 ALA 106 105 105 ALA ALA B . n B 1 107 GLN 107 106 106 GLN GLN B . n B 1 108 ILE 108 107 107 ILE ILE B . n B 1 109 ASP 109 108 108 ASP ASP B . n B 1 110 LYS 110 109 109 LYS LYS B . n B 1 111 ILE 111 110 110 ILE ILE B . n B 1 112 PHE 112 111 111 PHE PHE B . n B 1 113 TRP 113 112 112 TRP TRP B . n B 1 114 GLU 114 113 113 GLU GLU B . n B 1 115 THR 115 114 114 THR THR B . n B 1 116 LYS 116 115 115 LYS LYS B . n B 1 117 LYS 117 116 116 LYS LYS B . n B 1 118 ALA 118 117 117 ALA ALA B . n C 1 1 MSE 1 0 ? ? ? C . n C 1 2 HIS 2 1 ? ? ? C . n C 1 3 CYS 3 2 ? ? ? C . n C 1 4 ASP 4 3 ? ? ? C . n C 1 5 LEU 5 4 ? ? ? C . n C 1 6 PRO 6 5 ? ? ? C . n C 1 7 CYS 7 6 ? ? ? C . n C 1 8 GLY 8 7 ? ? ? C . n C 1 9 VAL 9 8 8 VAL VAL C . n C 1 10 TYR 10 9 9 TYR TYR C . n C 1 11 ASP 11 10 10 ASP ASP C . n C 1 12 PRO 12 11 11 PRO PRO C . n C 1 13 ALA 13 12 12 ALA ALA C . n C 1 14 GLN 14 13 13 GLN GLN C . n C 1 15 ALA 15 14 14 ALA ALA C . n C 1 16 ARG 16 15 15 ARG ARG C . n C 1 17 ILE 17 16 16 ILE ILE C . n C 1 18 GLU 18 17 17 GLU GLU C . n C 1 19 ALA 19 18 18 ALA ALA C . n C 1 20 GLU 20 19 19 GLU GLU C . n C 1 21 SER 21 20 20 SER SER C . n C 1 22 VAL 22 21 21 VAL VAL C . n C 1 23 LYS 23 22 22 LYS LYS C . n C 1 24 ALA 24 23 23 ALA ALA C . n C 1 25 VAL 25 24 24 VAL VAL C . n C 1 26 GLN 26 25 25 GLN GLN C . n C 1 27 GLU 27 26 26 GLU GLU C . n C 1 28 LYS 28 27 27 LYS LYS C . n C 1 29 MSE 29 28 28 MSE MSE C . n C 1 30 ALA 30 29 29 ALA ALA C . n C 1 31 GLY 31 30 30 GLY GLY C . n C 1 32 ASN 32 31 31 ASN ASN C . n C 1 33 ASP 33 32 32 ASP ASP C . n C 1 34 ASP 34 33 33 ASP ASP C . n C 1 35 PRO 35 34 34 PRO PRO C . n C 1 36 HIS 36 35 35 HIS HIS C . n C 1 37 PHE 37 36 36 PHE PHE C . n C 1 38 GLN 38 37 37 GLN GLN C . n C 1 39 THR 39 38 38 THR THR C . n C 1 40 ARG 40 39 39 ARG ARG C . n C 1 41 ALA 41 40 40 ALA ALA C . n C 1 42 THR 42 41 41 THR THR C . n C 1 43 VAL 43 42 42 VAL VAL C . n C 1 44 ILE 44 43 43 ILE ILE C . n C 1 45 LYS 45 44 44 LYS LYS C . n C 1 46 GLU 46 45 45 GLU GLU C . n C 1 47 GLN 47 46 46 GLN GLN C . n C 1 48 ARG 48 47 47 ARG ARG C . n C 1 49 ALA 49 48 48 ALA ALA C . n C 1 50 GLU 50 49 49 GLU GLU C . n C 1 51 LEU 51 50 50 LEU LEU C . n C 1 52 ALA 52 51 51 ALA ALA C . n C 1 53 LYS 53 52 52 LYS LYS C . n C 1 54 HIS 54 53 53 HIS HIS C . n C 1 55 HIS 55 54 54 HIS HIS C . n C 1 56 VAL 56 55 55 VAL VAL C . n C 1 57 SER 57 56 56 SER SER C . n C 1 58 VAL 58 57 57 VAL VAL C . n C 1 59 LEU 59 58 58 LEU LEU C . n C 1 60 TRP 60 59 59 TRP TRP C . n C 1 61 SER 61 60 60 SER SER C . n C 1 62 ASP 62 61 61 ASP ASP C . n C 1 63 TYR 63 62 62 TYR TYR C . n C 1 64 PHE 64 63 63 PHE PHE C . n C 1 65 LYS 65 64 64 LYS LYS C . n C 1 66 PRO 66 65 65 PRO PRO C . n C 1 67 PRO 67 66 66 PRO PRO C . n C 1 68 HIS 68 67 67 HIS HIS C . n C 1 69 PHE 69 68 68 PHE PHE C . n C 1 70 GLU 70 69 69 GLU GLU C . n C 1 71 LYS 71 70 70 LYS LYS C . n C 1 72 TYR 72 71 71 TYR TYR C . n C 1 73 PRO 73 72 72 PRO PRO C . n C 1 74 GLU 74 73 73 GLU GLU C . n C 1 75 LEU 75 74 74 LEU LEU C . n C 1 76 HIS 76 75 75 HIS HIS C . n C 1 77 GLN 77 76 76 GLN GLN C . n C 1 78 LEU 78 77 77 LEU LEU C . n C 1 79 VAL 79 78 78 VAL VAL C . n C 1 80 ASN 80 79 79 ASN ASN C . n C 1 81 ASP 81 80 80 ASP ASP C . n C 1 82 THR 82 81 81 THR THR C . n C 1 83 LEU 83 82 82 LEU LEU C . n C 1 84 LYS 84 83 83 LYS LYS C . n C 1 85 ALA 85 84 84 ALA ALA C . n C 1 86 MSE 86 85 85 MSE MSE C . n C 1 87 SER 87 86 86 SER SER C . n C 1 88 ALA 88 87 87 ALA ALA C . n C 1 89 ALA 89 88 88 ALA ALA C . n C 1 90 LYS 90 89 89 LYS LYS C . n C 1 91 GLY 91 90 90 GLY GLY C . n C 1 92 SER 92 91 91 SER SER C . n C 1 93 LYS 93 92 92 LYS LYS C . n C 1 94 ASP 94 93 93 ASP ASP C . n C 1 95 PRO 95 94 94 PRO PRO C . n C 1 96 ALA 96 95 95 ALA ALA C . n C 1 97 THR 97 96 96 THR THR C . n C 1 98 GLY 98 97 97 GLY GLY C . n C 1 99 GLN 99 98 98 GLN GLN C . n C 1 100 LYS 100 99 99 LYS LYS C . n C 1 101 ALA 101 100 100 ALA ALA C . n C 1 102 LEU 102 101 101 LEU LEU C . n C 1 103 ASP 103 102 102 ASP ASP C . n C 1 104 TYR 104 103 103 TYR TYR C . n C 1 105 ILE 105 104 104 ILE ILE C . n C 1 106 ALA 106 105 105 ALA ALA C . n C 1 107 GLN 107 106 106 GLN GLN C . n C 1 108 ILE 108 107 107 ILE ILE C . n C 1 109 ASP 109 108 108 ASP ASP C . n C 1 110 LYS 110 109 109 LYS LYS C . n C 1 111 ILE 111 110 110 ILE ILE C . n C 1 112 PHE 112 111 111 PHE PHE C . n C 1 113 TRP 113 112 112 TRP TRP C . n C 1 114 GLU 114 113 113 GLU GLU C . n C 1 115 THR 115 114 114 THR THR C . n C 1 116 LYS 116 115 115 LYS LYS C . n C 1 117 LYS 117 116 116 LYS LYS C . n C 1 118 ALA 118 117 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 1001 1001 HOH HOH A . D 2 HOH 2 1003 1003 HOH HOH A . D 2 HOH 3 1004 1004 HOH HOH A . D 2 HOH 4 1005 1005 HOH HOH A . D 2 HOH 5 1006 1006 HOH HOH A . D 2 HOH 6 1007 1007 HOH HOH A . D 2 HOH 7 1012 1012 HOH HOH A . D 2 HOH 8 1013 1013 HOH HOH A . D 2 HOH 9 1014 1014 HOH HOH A . D 2 HOH 10 1015 1015 HOH HOH A . D 2 HOH 11 1022 1022 HOH HOH A . E 2 HOH 1 1008 1008 HOH HOH B . E 2 HOH 2 1011 1011 HOH HOH B . E 2 HOH 3 1016 1016 HOH HOH B . F 2 HOH 1 1002 1002 HOH HOH C . F 2 HOH 2 1009 1009 HOH HOH C . F 2 HOH 3 1010 1010 HOH HOH C . F 2 HOH 4 1018 1018 HOH HOH C . F 2 HOH 5 1019 1019 HOH HOH C . F 2 HOH 6 1020 1020 HOH HOH C . F 2 HOH 7 1021 1021 HOH HOH C . F 2 HOH 8 1023 1023 HOH HOH C . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 29 A MSE 28 ? MET SELENOMETHIONINE 2 A MSE 86 A MSE 85 ? MET SELENOMETHIONINE 3 B MSE 29 B MSE 28 ? MET SELENOMETHIONINE 4 B MSE 86 B MSE 85 ? MET SELENOMETHIONINE 5 C MSE 29 C MSE 28 ? MET SELENOMETHIONINE 6 C MSE 86 C MSE 85 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10490 ? 1 MORE -52 ? 1 'SSA (A^2)' 28720 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 55.3295000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-07-13 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 10 ? ? -170.04 134.15 2 1 ASP A 32 ? ? -145.50 -9.96 3 1 ASP B 10 ? ? -172.00 126.56 4 1 PRO B 11 ? ? -68.88 2.60 5 1 TYR B 62 ? ? -90.84 -60.76 6 1 TYR C 62 ? ? -93.69 -68.33 7 1 PHE C 63 ? ? -57.18 104.07 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 62 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.069 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 0 ? A MSE 1 2 1 Y 1 A HIS 1 ? A HIS 2 3 1 Y 1 A CYS 2 ? A CYS 3 4 1 Y 1 A ASP 3 ? A ASP 4 5 1 Y 1 A LEU 4 ? A LEU 5 6 1 Y 1 A PRO 5 ? A PRO 6 7 1 Y 1 A CYS 6 ? A CYS 7 8 1 Y 1 B MSE 0 ? B MSE 1 9 1 Y 1 B HIS 1 ? B HIS 2 10 1 Y 1 B CYS 2 ? B CYS 3 11 1 Y 1 B ASP 3 ? B ASP 4 12 1 Y 1 B LEU 4 ? B LEU 5 13 1 Y 1 B PRO 5 ? B PRO 6 14 1 Y 1 B CYS 6 ? B CYS 7 15 1 Y 1 B GLY 7 ? B GLY 8 16 1 Y 1 C MSE 0 ? C MSE 1 17 1 Y 1 C HIS 1 ? C HIS 2 18 1 Y 1 C CYS 2 ? C CYS 3 19 1 Y 1 C ASP 3 ? C ASP 4 20 1 Y 1 C LEU 4 ? C LEU 5 21 1 Y 1 C PRO 5 ? C PRO 6 22 1 Y 1 C CYS 6 ? C CYS 7 23 1 Y 1 C GLY 7 ? C GLY 8 24 1 Y 1 C ALA 117 ? C ALA 118 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #