HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07-MAY-04 1T6T TITLE PUTATIVE PROTEIN FROM AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PROTEIN; COMPND 3 CHAIN: 1, 2; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: NP_214428; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, AQUIFEX AEOLICUS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,M.ZHOU,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 6 20-NOV-24 1T6T 1 SEQADV LINK REVDAT 5 11-OCT-17 1T6T 1 REMARK REVDAT 4 13-JUL-11 1T6T 1 VERSN REVDAT 3 24-FEB-09 1T6T 1 VERSN REVDAT 2 18-JAN-05 1T6T 1 AUTHOR KEYWDS REMARK REVDAT 1 03-AUG-04 1T6T 0 JRNL AUTH M.E.CUFF,M.ZHOU,F.COLLART,A.JOACHIMIAK JRNL TITL PUTATIVE PROTEIN FROM AQUIFEX AEOLICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 22463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 43.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1350 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 84 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 395 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.41000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 76.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97885 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSSED SI(111) REMARK 200 OPTICS : SBC2 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 26.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETHANOL, SODIUM CACODYLATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.20250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 1 1 REMARK 465 THR 1 2 REMARK 465 LYS 1 3 REMARK 465 GLU 1 4 REMARK 465 ASN 1 113 REMARK 465 GLY 1 114 REMARK 465 GLY 1 115 REMARK 465 LYS 1 116 REMARK 465 ASN 1 117 REMARK 465 SER 1 118 REMARK 465 MET 2 1 REMARK 465 THR 2 2 REMARK 465 LYS 2 3 REMARK 465 GLY 2 114 REMARK 465 GLY 2 115 REMARK 465 LYS 2 116 REMARK 465 ASN 2 117 REMARK 465 SER 2 118 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC22277 RELATED DB: TARGETDB DBREF 1T6T 1 1 118 UNP O67859 O67859_AQUAE 1 118 DBREF 1T6T 2 1 118 UNP O67859 O67859_AQUAE 1 118 SEQADV 1T6T MSE 1 57 UNP O67859 MET 57 MODIFIED RESIDUE SEQADV 1T6T MSE 1 82 UNP O67859 MET 82 MODIFIED RESIDUE SEQADV 1T6T MSE 2 57 UNP O67859 MET 57 MODIFIED RESIDUE SEQADV 1T6T MSE 2 82 UNP O67859 MET 82 MODIFIED RESIDUE SEQRES 1 1 118 MET THR LYS GLU PRO ARG ASN LEU SER GLU TRP ILE LYS SEQRES 2 1 118 GLU LEU LYS LYS ALA SER ARG GLU ALA VAL ILE LEU VAL SEQRES 3 1 118 GLU GLY LYS ASN ASP LYS LYS ALA LEU SER LYS PHE SER SEQRES 4 1 118 ILE LYS ASN VAL ILE ASP LEU SER GLY LYS ARG TYR ALA SEQRES 5 1 118 ASP VAL VAL ASP MSE LEU GLU GLY LYS TRP GLU LYS VAL SEQRES 6 1 118 ILE LEU LEU PHE ASP LEU ASP THR HIS GLY GLU ARG ILE SEQRES 7 1 118 ASN GLN LYS MSE LYS GLU LEU LEU SER SER GLN GLY PHE SEQRES 8 1 118 LEU VAL ASP GLU ASN PHE ARG ASN PHE LEU LYS LYS TRP SEQRES 9 1 118 ASN ILE ILE HIS ILE GLU GLU ILE ASN GLY GLY LYS ASN SEQRES 10 1 118 SER SEQRES 1 2 118 MET THR LYS GLU PRO ARG ASN LEU SER GLU TRP ILE LYS SEQRES 2 2 118 GLU LEU LYS LYS ALA SER ARG GLU ALA VAL ILE LEU VAL SEQRES 3 2 118 GLU GLY LYS ASN ASP LYS LYS ALA LEU SER LYS PHE SER SEQRES 4 2 118 ILE LYS ASN VAL ILE ASP LEU SER GLY LYS ARG TYR ALA SEQRES 5 2 118 ASP VAL VAL ASP MSE LEU GLU GLY LYS TRP GLU LYS VAL SEQRES 6 2 118 ILE LEU LEU PHE ASP LEU ASP THR HIS GLY GLU ARG ILE SEQRES 7 2 118 ASN GLN LYS MSE LYS GLU LEU LEU SER SER GLN GLY PHE SEQRES 8 2 118 LEU VAL ASP GLU ASN PHE ARG ASN PHE LEU LYS LYS TRP SEQRES 9 2 118 ASN ILE ILE HIS ILE GLU GLU ILE ASN GLY GLY LYS ASN SEQRES 10 2 118 SER MODRES 1T6T MSE 1 57 MET SELENOMETHIONINE MODRES 1T6T MSE 1 82 MET SELENOMETHIONINE MODRES 1T6T MSE 2 57 MET SELENOMETHIONINE MODRES 1T6T MSE 2 82 MET SELENOMETHIONINE HET MSE 1 57 8 HET MSE 1 82 8 HET MSE 2 57 8 HET MSE 2 82 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *395(H2 O) HELIX 1 1 ASN 1 7 SER 1 19 1 13 HELIX 2 2 GLY 1 28 LYS 1 37 1 10 HELIX 3 3 ARG 1 50 GLU 1 59 1 10 HELIX 4 4 ASP 1 72 GLN 1 89 1 18 HELIX 5 5 GLU 1 95 TRP 1 104 1 10 HELIX 6 6 HIS 1 108 ILE 1 112 5 5 HELIX 7 7 ASN 2 7 SER 2 19 1 13 HELIX 8 8 GLY 2 28 LYS 2 37 1 10 HELIX 9 9 ARG 2 50 GLU 2 59 1 10 HELIX 10 10 ASP 2 72 GLN 2 89 1 18 HELIX 11 11 GLU 2 95 LYS 2 102 1 8 HELIX 12 12 HIS 2 108 ASN 2 113 5 6 SHEET 1 A 4 VAL 1 43 ASP 1 45 0 SHEET 2 A 4 VAL 1 23 VAL 1 26 1 N ILE 1 24 O ILE 1 44 SHEET 3 A 4 LYS 1 64 LEU 1 67 1 O ILE 1 66 N VAL 1 23 SHEET 4 A 4 LEU 1 92 ASP 1 94 1 O ASP 1 94 N VAL 1 65 SHEET 1 B 4 VAL 2 43 ASP 2 45 0 SHEET 2 B 4 VAL 2 23 VAL 2 26 1 N ILE 2 24 O ILE 2 44 SHEET 3 B 4 LYS 2 64 LEU 2 67 1 O ILE 2 66 N VAL 2 23 SHEET 4 B 4 LEU 2 92 ASP 2 94 1 O ASP 2 94 N VAL 2 65 LINK C ASP 1 56 N MSE 1 57 1555 1555 1.33 LINK C MSE 1 57 N LEU 1 58 1555 1555 1.33 LINK C LYS 1 81 N MSE 1 82 1555 1555 1.33 LINK C MSE 1 82 N LYS 1 83 1555 1555 1.33 LINK C ASP 2 56 N MSE 2 57 1555 1555 1.33 LINK C MSE 2 57 N LEU 2 58 1555 1555 1.33 LINK C LYS 2 81 N MSE 2 82 1555 1555 1.33 LINK C MSE 2 82 N LYS 2 83 1555 1555 1.33 CRYST1 45.906 58.405 54.124 90.00 98.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021784 0.000000 0.003446 0.00000 SCALE2 0.000000 0.017122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018706 0.00000