HEADER UNKNOWN FUNCTION 14-MAY-04 1T95 TITLE CRYSTAL STRUCTURE OF THE SHWACHMAN-BODIAN-DIAMOND SYNDROME TITLE 2 PROTEIN ORTHOLOGUE FROM ARCHAEOGLOBUS FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN AF0491; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF0491; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET KEYWDS SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN ORTHOLOGUE, KEYWDS 2 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.SHAMMAS,A.J.WARREN REVDAT 4 24-FEB-09 1T95 1 VERSN REVDAT 3 17-MAY-05 1T95 1 JRNL REVDAT 2 28-SEP-04 1T95 1 REMARK REVDAT 1 22-JUN-04 1T95 0 JRNL AUTH C.SHAMMAS,T.F.MENNE,C.HILCENKO,S.R.MICHELL, JRNL AUTH 2 B.GOYENECHEA,G.R.BOOCOCK,P.R.DURIE,J.M.ROMMENS, JRNL AUTH 3 A.J.WARREN JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSIS OF THE SBDS JRNL TITL 2 PROTEIN FAMILY. INSIGHT INTO THE JRNL TITL 3 LEUKEMIA-ASSOCIATED SHWACHMAN-DIAMOND SYNDROME. JRNL REF J.BIOL.CHEM. V. 280 19221 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15701631 JRNL DOI 10.1074/JBC.M414656200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 20479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : 1.67000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.53000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : -2.85000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.629 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1808 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1720 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2440 ; 1.761 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3986 ; 0.889 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 229 ; 7.311 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2003 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 344 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 308 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1783 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1079 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 52 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 2 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.332 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1143 ; 1.319 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1841 ; 2.418 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 665 ; 3.704 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 599 ; 6.342 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 1T95 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-04. REMARK 100 THE RCSB ID CODE IS RCSB022467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920, 0.979289, 0.891971 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 52.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CHES, DTT, PH 9.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THERE ARE SIX ADDITIONAL RESIDUES AT THE N-TERMINUS OF THE REMARK 400 PROTEIN THAT CORRESPOND TO A HIS-TAG. THUS THE RESIDUE REMARK 400 NUMBERED 11 IN THE COORDINATE SECTION OF THE FILE ACTUALLY REMARK 400 CORRESPONDS TO RESIDUE 5 IN THE SEQUENCE DATABASE REFERENCE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 VAL A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 12 CD CE NZ REMARK 480 ARG A 99 NE CZ NH1 NH2 REMARK 480 LYS A 107 CD CE NZ REMARK 480 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 121 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG A 130 NE CZ NH1 NH2 REMARK 480 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 136 CD OE1 OE2 REMARK 480 LYS A 139 CD CE NZ REMARK 480 LYS A 153 CE NZ REMARK 480 LYS A 157 CD CE NZ REMARK 480 LYS A 160 CG CD CE NZ REMARK 480 LYS A 166 CD CE NZ REMARK 480 ARG A 201 CD NE CZ NH1 NH2 REMARK 480 LYS A 228 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 121 CB PRO A 178 1645 1.30 REMARK 500 NH1 ARG A 121 O GLY A 203 1645 1.69 REMARK 500 NH2 ARG A 121 CA PRO A 178 1645 1.90 REMARK 500 CZ ARG A 121 CB PRO A 178 1645 2.02 REMARK 500 NH2 ARG A 121 C PRO A 178 1645 2.15 REMARK 500 NH1 ARG A 121 C GLY A 203 1645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 12 CG LYS A 12 CD -0.245 REMARK 500 ARG A 99 CD ARG A 99 NE -0.281 REMARK 500 LYS A 107 CG LYS A 107 CD 0.210 REMARK 500 ARG A 121 CA ARG A 121 CB -0.159 REMARK 500 ARG A 130 CD ARG A 130 NE -0.169 REMARK 500 LYS A 139 CG LYS A 139 CD -0.470 REMARK 500 ARG A 201 CG ARG A 201 CD 0.227 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 11 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 99 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 130 CD - NE - CZ ANGL. DEV. = 25.5 DEGREES REMARK 500 GLU A 136 CB - CG - CD ANGL. DEV. = 17.7 DEGREES REMARK 500 GLU A 136 CG - CD - OE2 ANGL. DEV. = -18.9 DEGREES REMARK 500 LYS A 139 CB - CG - CD ANGL. DEV. = 37.1 DEGREES REMARK 500 LYS A 153 CG - CD - CE ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 96.38 -161.38 REMARK 500 PRO A 120 5.58 -53.06 REMARK 500 THR A 122 9.34 176.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 121 THR A 122 147.91 REMARK 500 THR A 122 ASN A 123 -147.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 136 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1T95 A 8 240 UNP O29759 Y491_ARCFU 2 234 SEQADV 1T95 MSE A 1 UNP O29759 CLONING ARTIFACT SEQADV 1T95 HIS A 2 UNP O29759 CLONING ARTIFACT SEQADV 1T95 HIS A 3 UNP O29759 CLONING ARTIFACT SEQADV 1T95 HIS A 4 UNP O29759 CLONING ARTIFACT SEQADV 1T95 HIS A 5 UNP O29759 CLONING ARTIFACT SEQADV 1T95 HIS A 6 UNP O29759 CLONING ARTIFACT SEQADV 1T95 HIS A 7 UNP O29759 CLONING ARTIFACT SEQADV 1T95 MSE A 101 UNP O29759 MET 95 MODIFIED RESIDUE SEQADV 1T95 MSE A 170 UNP O29759 MET 164 MODIFIED RESIDUE SEQADV 1T95 MSE A 209 UNP O29759 MET 203 MODIFIED RESIDUE SEQADV 1T95 MSE A 215 UNP O29759 MET 209 MODIFIED RESIDUE SEQADV 1T95 MSE A 220 UNP O29759 MET 214 MODIFIED RESIDUE SEQRES 1 A 240 MSE HIS HIS HIS HIS HIS HIS VAL SER LEU ASP LYS ALA SEQRES 2 A 240 VAL ILE ALA ARG LEU ARG LYS GLY GLY GLU GLU PHE GLU SEQRES 3 A 240 VAL LEU VAL ASP PRO TYR LEU ALA ARG ASP LEU LYS GLU SEQRES 4 A 240 GLY LYS GLU VAL ASN PHE GLU ASP LEU LEU ALA ALA GLU SEQRES 5 A 240 GLU VAL PHE LYS ASP ALA LYS LYS GLY GLU ARG ALA SER SEQRES 6 A 240 VAL ASP GLU LEU ARG LYS ILE PHE GLY THR ASP ASP VAL SEQRES 7 A 240 PHE GLU ILE ALA ARG LYS ILE ILE LEU GLU GLY GLU VAL SEQRES 8 A 240 GLN ILE THR ALA GLU GLN ARG ARG GLU MSE LEU GLU ALA SEQRES 9 A 240 LYS ARG LYS GLN ILE ILE ASN PHE ILE SER ARG ASN THR SEQRES 10 A 240 ILE ASP PRO ARG THR ASN ALA PRO HIS PRO PRO SER ARG SEQRES 11 A 240 ILE GLU ARG ALA LEU GLU GLU ALA LYS VAL HIS ILE ASP SEQRES 12 A 240 ILE PHE LYS SER VAL GLU ALA GLN VAL LYS ASP ILE VAL SEQRES 13 A 240 LYS ALA LEU LYS PRO ILE LEU PRO LEU LYS PHE GLU GLU SEQRES 14 A 240 MSE GLU ILE ALA ILE LYS ILE PRO PRO GLU HIS THR GLY SEQRES 15 A 240 ARG ALA ILE SER ALA LEU TYR ASN PHE GLY GLY VAL THR SEQRES 16 A 240 ARG GLU GLU TRP GLN ARG ASP GLY SER TRP ILE CYS VAL SEQRES 17 A 240 MSE ARG ILE PRO SER GLY MSE TYR GLY ASP LEU MSE ASP SEQRES 18 A 240 LEU LEU GLY LYS VAL ALA LYS GLY GLU ALA LEU THR LYS SEQRES 19 A 240 VAL LEU ARG ARG ILE GLY MODRES 1T95 MSE A 101 MET SELENOMETHIONINE MODRES 1T95 MSE A 170 MET SELENOMETHIONINE MODRES 1T95 MSE A 209 MET SELENOMETHIONINE MODRES 1T95 MSE A 215 MET SELENOMETHIONINE MODRES 1T95 MSE A 220 MET SELENOMETHIONINE HET MSE A 101 8 HET MSE A 170 8 HET MSE A 209 8 HET MSE A 215 8 HET MSE A 220 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *66(H2 O) HELIX 1 1 ASP A 30 GLU A 39 1 10 HELIX 2 2 ASN A 44 LEU A 49 1 6 HELIX 3 3 SER A 65 GLY A 74 1 10 HELIX 4 4 ASP A 77 GLY A 89 1 13 HELIX 5 5 THR A 94 ASN A 116 1 23 HELIX 6 6 PRO A 127 ALA A 138 1 12 HELIX 7 7 GLN A 151 LYS A 160 1 10 HELIX 8 8 PRO A 177 GLU A 179 5 3 HELIX 9 9 HIS A 180 GLY A 192 1 13 HELIX 10 10 MSE A 215 LYS A 228 1 14 SHEET 1 A 3 GLU A 23 VAL A 29 0 SHEET 2 A 3 VAL A 14 LYS A 20 -1 N ALA A 16 O VAL A 27 SHEET 3 A 3 GLU A 90 VAL A 91 -1 O GLU A 90 N ARG A 17 SHEET 1 B 2 PHE A 55 ASP A 57 0 SHEET 2 B 2 GLU A 62 ARG A 63 -1 O GLU A 62 N LYS A 56 SHEET 1 C 2 THR A 117 ILE A 118 0 SHEET 2 C 2 LYS A 166 PHE A 167 -1 O LYS A 166 N ILE A 118 SHEET 1 D 4 VAL A 194 TRP A 199 0 SHEET 2 D 4 TRP A 205 PRO A 212 -1 O ILE A 206 N GLU A 198 SHEET 3 D 4 GLU A 169 ILE A 176 -1 N ILE A 172 O MSE A 209 SHEET 4 D 4 LEU A 232 ILE A 239 -1 O ILE A 239 N GLU A 169 LINK C GLU A 100 N MSE A 101 1555 1555 1.32 LINK C MSE A 101 N LEU A 102 1555 1555 1.32 LINK C GLU A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N GLU A 171 1555 1555 1.33 LINK C VAL A 208 N MSE A 209 1555 1555 1.32 LINK C MSE A 209 N ARG A 210 1555 1555 1.31 LINK C GLY A 214 N MSE A 215 1555 1555 1.35 LINK C MSE A 215 N TYR A 216 1555 1555 1.33 LINK C LEU A 219 N MSE A 220 1555 1555 1.32 LINK C MSE A 220 N ASP A 221 1555 1555 1.34 CRYST1 33.668 44.448 54.720 75.87 85.61 69.49 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029702 -0.011112 0.000313 0.00000 SCALE2 0.000000 0.024021 -0.005745 0.00000 SCALE3 0.000000 0.000000 0.018845 0.00000