HEADER OXIDOREDUCTASE 19-MAY-04 1TA9 TITLE CRYSTAL STRUCTURE OF GLYCEROL DEHYDROGENASE FROM SCHIZOSACCHAROMYCES TITLE 2 POMBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896 KEYWDS GLYCEROL DEHYDROGENASE, SCHIZOSACCHAROMYCES POMBE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.MULICHAK REVDAT 5 14-FEB-24 1TA9 1 REMARK LINK REVDAT 4 11-OCT-17 1TA9 1 REMARK REVDAT 3 13-JUL-11 1TA9 1 VERSN REVDAT 2 24-FEB-09 1TA9 1 VERSN REVDAT 1 16-AUG-05 1TA9 0 JRNL AUTH A.M.MULICHAK JRNL TITL CRYSTAL STRUCTURE OF GLYCEROL DEHYDROGENASE FROM JRNL TITL 2 SCHYZOSACCHAROMYCES POMBE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 58351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2485 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 684 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35900 REMARK 3 B22 (A**2) : 0.35900 REMARK 3 B33 (A**2) : -0.71800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.180 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.44 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.394 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.709 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.525 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.849 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 62.62 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NEWLIG.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA,K TARTRATE, PH 7.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.99000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.31500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.99000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.99000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.31500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 52.99000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 52.99000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 70.31500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 52.99000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 52.99000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 70.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN OCTAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y, X, Z; -X, -Y, Z; REMARK 300 AND Y, -X, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 34570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 100920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -402.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.98000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.98000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 105.98000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 105.98000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLY A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 CYS A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 PHE A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 HIS A 20 REMARK 465 ARG A 21 REMARK 465 ASN A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 VAL A 25 REMARK 465 PHE A 26 REMARK 465 ALA A 27 REMARK 465 LEU A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 ALA A 33 REMARK 465 VAL A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 ARG A 37 REMARK 465 TRP A 38 REMARK 465 GLY A 39 REMARK 465 LYS A 40 REMARK 465 ARG A 41 REMARK 465 PHE A 42 REMARK 465 TYR A 43 REMARK 465 ALA A 44 REMARK 465 PRO A 45 REMARK 465 ILE A 46 REMARK 465 GLU A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 THR A 50 REMARK 465 PRO A 51 REMARK 465 HIS A 52 REMARK 465 LYS A 53 REMARK 465 VAL A 54 REMARK 465 GLY A 55 REMARK 465 VAL A 56 REMARK 465 GLU A 57 REMARK 465 THR A 193 REMARK 465 PRO A 194 REMARK 465 ASP A 195 REMARK 465 GLY A 196 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 GLY B 3 REMARK 465 PRO B 4 REMARK 465 ARG B 5 REMARK 465 LEU B 6 REMARK 465 CYS B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 THR B 10 REMARK 465 PRO B 11 REMARK 465 ARG B 12 REMARK 465 PHE B 13 REMARK 465 PRO B 14 REMARK 465 LEU B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 LEU B 18 REMARK 465 ALA B 19 REMARK 465 HIS B 20 REMARK 465 ARG B 21 REMARK 465 ASN B 22 REMARK 465 SER B 23 REMARK 465 LYS B 24 REMARK 465 VAL B 25 REMARK 465 PHE B 26 REMARK 465 ALA B 27 REMARK 465 LEU B 28 REMARK 465 ALA B 29 REMARK 465 SER B 30 REMARK 465 SER B 31 REMARK 465 ASN B 32 REMARK 465 ALA B 33 REMARK 465 VAL B 34 REMARK 465 ALA B 35 REMARK 465 GLN B 36 REMARK 465 ARG B 37 REMARK 465 TRP B 38 REMARK 465 GLY B 39 REMARK 465 LYS B 40 REMARK 465 ARG B 41 REMARK 465 PHE B 42 REMARK 465 TYR B 43 REMARK 465 ALA B 44 REMARK 465 PRO B 45 REMARK 465 ILE B 46 REMARK 465 GLU B 47 REMARK 465 THR B 48 REMARK 465 GLU B 49 REMARK 465 THR B 50 REMARK 465 PRO B 51 REMARK 465 HIS B 52 REMARK 465 LYS B 53 REMARK 465 VAL B 54 REMARK 465 GLY B 55 REMARK 465 VAL B 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 ASP A 136 CG OD1 OD2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 SER A 167 OG REMARK 470 VAL A 190 CG1 CG2 REMARK 470 TYR A 192 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 197 CG CD OE1 NE2 REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 SER A 202 OG REMARK 470 LYS A 364 CD CE NZ REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 SER B 131 OG REMARK 470 VAL B 133 CG1 CG2 REMARK 470 GLU B 134 CG CD OE1 OE2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 ARG B 139 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 SER B 167 OG REMARK 470 VAL B 190 CG1 CG2 REMARK 470 TYR B 192 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 470 GLN B 199 CG CD OE1 NE2 REMARK 470 LYS B 200 CG CD CE NZ REMARK 470 SER B 202 OG REMARK 470 ARG B 440 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 106 -17.19 -150.55 REMARK 500 ALA A 179 56.91 -108.68 REMARK 500 THR A 299 -64.79 -107.61 REMARK 500 ALA A 312 -128.82 -138.87 REMARK 500 HIS A 325 -138.90 60.04 REMARK 500 CYS B 106 -20.30 -157.36 REMARK 500 GLN B 116 -9.27 -58.17 REMARK 500 ALA B 130 45.95 -82.10 REMARK 500 ALA B 179 59.79 -113.56 REMARK 500 THR B 299 -68.49 -104.80 REMARK 500 ALA B 312 -127.78 -136.94 REMARK 500 HIS B 325 -144.32 62.42 REMARK 500 HIS B 366 35.35 73.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1503 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD2 REMARK 620 2 ASP A 232 O 101.1 REMARK 620 3 ASP A 232 OD2 86.1 63.1 REMARK 620 4 SER A 235 OG 159.3 59.4 78.9 REMARK 620 5 THR A 236 OG1 83.6 83.5 142.2 99.7 REMARK 620 6 SER A 302 OG 43.5 76.7 106.2 128.1 45.5 REMARK 620 7 GOL A1401 O3 64.4 128.2 66.4 120.4 137.2 107.9 REMARK 620 8 HOH A1540 O 132.7 123.9 125.0 68.0 87.4 128.8 94.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 OD1 REMARK 620 2 ASP A 232 OD2 53.7 REMARK 620 3 HIS A 315 NE2 147.7 96.3 REMARK 620 4 HIS A 333 NE2 94.9 102.6 104.2 REMARK 620 5 GOL A1401 O3 94.2 100.8 78.8 155.9 REMARK 620 6 GOL A1401 O2 121.3 172.8 87.2 82.5 73.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1504 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 182 OD2 REMARK 620 2 ASP B 232 O 101.7 REMARK 620 3 ASP B 232 OD2 88.2 64.5 REMARK 620 4 SER B 235 OG 159.3 58.3 78.5 REMARK 620 5 THR B 236 OG1 80.2 80.7 140.3 99.9 REMARK 620 6 SER B 302 OG 43.1 76.0 107.2 126.4 42.4 REMARK 620 7 GOL B1402 O3 67.2 128.0 64.5 119.2 139.4 110.2 REMARK 620 8 HOH B1526 O 131.4 120.5 129.9 68.7 83.6 122.7 99.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 232 OD2 REMARK 620 2 ASP B 232 OD1 52.9 REMARK 620 3 HIS B 315 NE2 91.5 142.9 REMARK 620 4 HIS B 333 NE2 102.4 98.9 98.6 REMARK 620 5 GOL B1402 O3 99.7 92.3 83.3 157.8 REMARK 620 6 GOL B1402 O2 169.8 117.8 96.6 82.6 75.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA A 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1403 DBREF 1TA9 A 1 450 GB 19114563 NP_593651 1 450 DBREF 1TA9 B 1 450 GB 19114563 NP_593651 1 450 SEQRES 1 A 450 MET ILE GLY PRO ARG LEU CYS ALA ALA THR PRO ARG PHE SEQRES 2 A 450 PRO LEU VAL SER LEU ALA HIS ARG ASN SER LYS VAL PHE SEQRES 3 A 450 ALA LEU ALA SER SER ASN ALA VAL ALA GLN ARG TRP GLY SEQRES 4 A 450 LYS ARG PHE TYR ALA PRO ILE GLU THR GLU THR PRO HIS SEQRES 5 A 450 LYS VAL GLY VAL GLU PHE GLU GLU SER LYS ASP ARG ILE SEQRES 6 A 450 PHE THR SER PRO GLN LYS TYR VAL GLN GLY ARG HIS ALA SEQRES 7 A 450 PHE THR ARG SER TYR MET TYR VAL LYS LYS TRP ALA THR SEQRES 8 A 450 LYS SER ALA VAL VAL LEU ALA ASP GLN ASN VAL TRP ASN SEQRES 9 A 450 ILE CYS ALA ASN LYS ILE VAL ASP SER LEU SER GLN ASN SEQRES 10 A 450 GLY MET THR VAL THR LYS LEU VAL PHE GLY GLY GLU ALA SEQRES 11 A 450 SER LEU VAL GLU LEU ASP LYS LEU ARG LYS GLN CYS PRO SEQRES 12 A 450 ASP ASP THR GLN VAL ILE ILE GLY VAL GLY GLY GLY LYS SEQRES 13 A 450 THR MET ASP SER ALA LYS TYR ILE ALA HIS SER MET ASN SEQRES 14 A 450 LEU PRO SER ILE ILE CYS PRO THR THR ALA SER SER ASP SEQRES 15 A 450 ALA ALA THR SER SER LEU SER VAL ILE TYR THR PRO ASP SEQRES 16 A 450 GLY GLN PHE GLN LYS TYR SER PHE TYR PRO LEU ASN PRO SEQRES 17 A 450 ASN LEU ILE PHE ILE ASP THR ASP VAL ILE VAL ARG ALA SEQRES 18 A 450 PRO VAL ARG PHE LEU ILE SER GLY ILE GLY ASP ALA LEU SEQRES 19 A 450 SER THR TRP VAL GLU THR GLU SER VAL ILE ARG SER ASN SEQRES 20 A 450 SER THR SER PHE ALA GLY GLY VAL ALA SER ILE ALA GLY SEQRES 21 A 450 ARG TYR ILE ALA ARG ALA CYS LYS ASP THR LEU GLU LYS SEQRES 22 A 450 TYR ALA LEU SER ALA ILE LEU SER ASN THR ARG GLY VAL SEQRES 23 A 450 CYS THR GLU ALA PHE GLU ASN VAL VAL GLU ALA ASN THR SEQRES 24 A 450 LEU MET SER GLY LEU GLY PHE GLU ASN GLY GLY LEU ALA SEQRES 25 A 450 ALA ALA HIS ALA ILE HIS ASN GLY MET THR ALA ILE HIS SEQRES 26 A 450 GLY PRO VAL HIS ARG LEU MET HIS GLY GLU LYS VAL ALA SEQRES 27 A 450 TYR GLY THR LEU VAL GLN VAL VAL LEU GLU ASP TRP PRO SEQRES 28 A 450 LEU GLU ASP PHE ASN ASN LEU ALA SER PHE MET ALA LYS SEQRES 29 A 450 CYS HIS LEU PRO ILE THR LEU GLU GLU LEU GLY ILE PRO SEQRES 30 A 450 ASN VAL THR ASP GLU GLU LEU LEU MET VAL GLY ARG ALA SEQRES 31 A 450 THR LEU ARG PRO ASP GLU SER ILE HIS ASN MET SER LYS SEQRES 32 A 450 LYS PHE ASN PRO SER GLN ILE ALA ASP ALA ILE LYS ALA SEQRES 33 A 450 VAL ASP SER TYR SER GLN LYS TRP GLN GLU GLN THR GLY SEQRES 34 A 450 TRP THR GLU ARG PHE ARG LEU PRO PRO SER ARG HIS SER SEQRES 35 A 450 PRO HIS LEU THR ASP ILE HIS PRO SEQRES 1 B 450 MET ILE GLY PRO ARG LEU CYS ALA ALA THR PRO ARG PHE SEQRES 2 B 450 PRO LEU VAL SER LEU ALA HIS ARG ASN SER LYS VAL PHE SEQRES 3 B 450 ALA LEU ALA SER SER ASN ALA VAL ALA GLN ARG TRP GLY SEQRES 4 B 450 LYS ARG PHE TYR ALA PRO ILE GLU THR GLU THR PRO HIS SEQRES 5 B 450 LYS VAL GLY VAL GLU PHE GLU GLU SER LYS ASP ARG ILE SEQRES 6 B 450 PHE THR SER PRO GLN LYS TYR VAL GLN GLY ARG HIS ALA SEQRES 7 B 450 PHE THR ARG SER TYR MET TYR VAL LYS LYS TRP ALA THR SEQRES 8 B 450 LYS SER ALA VAL VAL LEU ALA ASP GLN ASN VAL TRP ASN SEQRES 9 B 450 ILE CYS ALA ASN LYS ILE VAL ASP SER LEU SER GLN ASN SEQRES 10 B 450 GLY MET THR VAL THR LYS LEU VAL PHE GLY GLY GLU ALA SEQRES 11 B 450 SER LEU VAL GLU LEU ASP LYS LEU ARG LYS GLN CYS PRO SEQRES 12 B 450 ASP ASP THR GLN VAL ILE ILE GLY VAL GLY GLY GLY LYS SEQRES 13 B 450 THR MET ASP SER ALA LYS TYR ILE ALA HIS SER MET ASN SEQRES 14 B 450 LEU PRO SER ILE ILE CYS PRO THR THR ALA SER SER ASP SEQRES 15 B 450 ALA ALA THR SER SER LEU SER VAL ILE TYR THR PRO ASP SEQRES 16 B 450 GLY GLN PHE GLN LYS TYR SER PHE TYR PRO LEU ASN PRO SEQRES 17 B 450 ASN LEU ILE PHE ILE ASP THR ASP VAL ILE VAL ARG ALA SEQRES 18 B 450 PRO VAL ARG PHE LEU ILE SER GLY ILE GLY ASP ALA LEU SEQRES 19 B 450 SER THR TRP VAL GLU THR GLU SER VAL ILE ARG SER ASN SEQRES 20 B 450 SER THR SER PHE ALA GLY GLY VAL ALA SER ILE ALA GLY SEQRES 21 B 450 ARG TYR ILE ALA ARG ALA CYS LYS ASP THR LEU GLU LYS SEQRES 22 B 450 TYR ALA LEU SER ALA ILE LEU SER ASN THR ARG GLY VAL SEQRES 23 B 450 CYS THR GLU ALA PHE GLU ASN VAL VAL GLU ALA ASN THR SEQRES 24 B 450 LEU MET SER GLY LEU GLY PHE GLU ASN GLY GLY LEU ALA SEQRES 25 B 450 ALA ALA HIS ALA ILE HIS ASN GLY MET THR ALA ILE HIS SEQRES 26 B 450 GLY PRO VAL HIS ARG LEU MET HIS GLY GLU LYS VAL ALA SEQRES 27 B 450 TYR GLY THR LEU VAL GLN VAL VAL LEU GLU ASP TRP PRO SEQRES 28 B 450 LEU GLU ASP PHE ASN ASN LEU ALA SER PHE MET ALA LYS SEQRES 29 B 450 CYS HIS LEU PRO ILE THR LEU GLU GLU LEU GLY ILE PRO SEQRES 30 B 450 ASN VAL THR ASP GLU GLU LEU LEU MET VAL GLY ARG ALA SEQRES 31 B 450 THR LEU ARG PRO ASP GLU SER ILE HIS ASN MET SER LYS SEQRES 32 B 450 LYS PHE ASN PRO SER GLN ILE ALA ASP ALA ILE LYS ALA SEQRES 33 B 450 VAL ASP SER TYR SER GLN LYS TRP GLN GLU GLN THR GLY SEQRES 34 B 450 TRP THR GLU ARG PHE ARG LEU PRO PRO SER ARG HIS SER SEQRES 35 B 450 PRO HIS LEU THR ASP ILE HIS PRO HET ZN A1502 1 HET K A1503 1 HET ALA A1504 5 HET ALA A1505 6 HET GOL A1401 6 HET GOL A1403 6 HET ZN B1501 1 HET K B1504 1 HET GOL B1402 6 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM ALA ALANINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 K 2(K 1+) FORMUL 5 ALA 2(C3 H7 N O2) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 12 HOH *684(H2 O) HELIX 1 1 HIS A 77 THR A 80 5 4 HELIX 2 2 ARG A 81 LYS A 87 1 7 HELIX 3 3 GLN A 100 CYS A 106 1 7 HELIX 4 4 CYS A 106 ASN A 117 1 12 HELIX 5 5 SER A 131 LYS A 140 1 10 HELIX 6 6 GLY A 154 MET A 168 1 15 HELIX 7 7 THR A 215 ALA A 221 1 7 HELIX 8 8 PRO A 222 SER A 246 1 25 HELIX 9 9 SER A 257 GLY A 285 1 29 HELIX 10 10 THR A 288 ASN A 308 1 21 HELIX 11 11 ALA A 312 THR A 322 1 11 HELIX 12 12 ALA A 323 LEU A 331 5 9 HELIX 13 13 MET A 332 GLU A 348 1 17 HELIX 14 14 PRO A 351 CYS A 365 1 15 HELIX 15 15 THR A 370 GLY A 375 1 6 HELIX 16 16 THR A 380 LEU A 392 1 13 HELIX 17 17 GLU A 396 MET A 401 5 6 HELIX 18 18 ASN A 406 GLY A 429 1 24 HELIX 19 19 HIS B 77 THR B 80 5 4 HELIX 20 20 ARG B 81 LYS B 87 1 7 HELIX 21 21 ASP B 99 CYS B 106 1 8 HELIX 22 22 CYS B 106 GLN B 116 1 11 HELIX 23 23 SER B 131 LYS B 140 1 10 HELIX 24 24 GLY B 154 MET B 168 1 15 HELIX 25 25 THR B 215 ALA B 221 1 7 HELIX 26 26 PRO B 222 SER B 246 1 25 HELIX 27 27 SER B 257 GLY B 285 1 29 HELIX 28 28 THR B 288 ASN B 308 1 21 HELIX 29 29 ALA B 312 ALA B 323 1 12 HELIX 30 30 ILE B 324 LEU B 331 5 8 HELIX 31 31 MET B 332 GLU B 348 1 17 HELIX 32 32 PRO B 351 CYS B 365 1 15 HELIX 33 33 THR B 370 GLY B 375 1 6 HELIX 34 34 THR B 380 LEU B 392 1 13 HELIX 35 35 GLU B 396 MET B 401 5 6 HELIX 36 36 ASN B 406 GLY B 429 1 24 SHEET 1 A 7 ARG A 64 THR A 67 0 SHEET 2 A 7 LYS B 71 GLY B 75 -1 O GLN B 74 N ARG A 64 SHEET 3 A 7 LEU B 210 ASP B 214 1 O ILE B 213 N VAL B 73 SHEET 4 A 7 SER B 172 PRO B 176 1 N ILE B 174 O LEU B 210 SHEET 5 A 7 VAL B 148 GLY B 153 1 N GLY B 151 O CYS B 175 SHEET 6 A 7 SER B 93 ALA B 98 1 N LEU B 97 O ILE B 150 SHEET 7 A 7 THR B 120 VAL B 125 1 O THR B 122 N VAL B 96 SHEET 1 B 7 THR A 120 PHE A 126 0 SHEET 2 B 7 SER A 93 ASP A 99 1 N ALA A 94 O THR A 122 SHEET 3 B 7 VAL A 148 GLY A 153 1 O ILE A 150 N LEU A 97 SHEET 4 B 7 SER A 172 PRO A 176 1 O CYS A 175 N GLY A 151 SHEET 5 B 7 LEU A 210 ASP A 214 1 O LEU A 210 N ILE A 174 SHEET 6 B 7 LYS A 71 GLY A 75 1 N VAL A 73 O ILE A 213 SHEET 7 B 7 ARG B 64 THR B 67 -1 O ARG B 64 N GLN A 74 SHEET 1 C 2 LEU A 188 ILE A 191 0 SHEET 2 C 2 LYS A 200 PHE A 203 -1 O LYS A 200 N ILE A 191 SHEET 1 D 2 LEU B 188 TYR B 192 0 SHEET 2 D 2 PHE B 198 PHE B 203 -1 O GLN B 199 N ILE B 191 LINK C ALA A1504 N ALA A1505 1555 1555 1.33 LINK OD2 ASP A 182 K K A1503 1555 1555 2.64 LINK OD1 ASP A 232 ZN ZN A1502 1555 1555 2.59 LINK OD2 ASP A 232 ZN ZN A1502 1555 1555 2.22 LINK O ASP A 232 K K A1503 1555 1555 2.68 LINK OD2 ASP A 232 K K A1503 1555 1555 3.23 LINK OG SER A 235 K K A1503 1555 1555 2.95 LINK OG1 THR A 236 K K A1503 1555 1555 2.95 LINK OG SER A 302 K K A1503 1555 1555 3.65 LINK NE2 HIS A 315 ZN ZN A1502 1555 1555 2.19 LINK NE2 HIS A 333 ZN ZN A1502 1555 1555 2.26 LINK O3 GOL A1401 ZN ZN A1502 1555 1555 2.44 LINK O2 GOL A1401 ZN ZN A1502 1555 1555 2.37 LINK O3 GOL A1401 K K A1503 1555 1555 3.33 LINK K K A1503 O HOH A1540 1555 1555 2.57 LINK OD2 ASP B 182 K K B1504 1555 1555 2.67 LINK OD2 ASP B 232 ZN ZN B1501 1555 1555 2.23 LINK OD1 ASP B 232 ZN ZN B1501 1555 1555 2.63 LINK O ASP B 232 K K B1504 1555 1555 2.82 LINK OD2 ASP B 232 K K B1504 1555 1555 3.29 LINK OG SER B 235 K K B1504 1555 1555 3.17 LINK OG1 THR B 236 K K B1504 1555 1555 3.04 LINK OG SER B 302 K K B1504 1555 1555 3.71 LINK NE2 HIS B 315 ZN ZN B1501 1555 1555 2.20 LINK NE2 HIS B 333 ZN ZN B1501 1555 1555 2.25 LINK O3 GOL B1402 ZN ZN B1501 1555 1555 2.32 LINK O2 GOL B1402 ZN ZN B1501 1555 1555 2.38 LINK O3 GOL B1402 K K B1504 1555 1555 3.22 LINK K K B1504 O HOH B1526 1555 1555 2.58 SITE 1 AC1 4 ASP B 232 HIS B 315 HIS B 333 GOL B1402 SITE 1 AC2 4 ASP A 232 HIS A 315 HIS A 333 GOL A1401 SITE 1 AC3 8 ASP A 182 ASP A 232 SER A 235 THR A 236 SITE 2 AC3 8 SER A 302 HIS A 315 GOL A1401 HOH A1540 SITE 1 AC4 7 ASP B 182 ASP B 232 SER B 235 THR B 236 SITE 2 AC4 7 HIS B 315 GOL B1402 HOH B1526 SITE 1 AC5 6 ALA A 130 VAL A 190 ILE A 191 TYR A 192 SITE 2 AC5 6 ALA A1505 HOH A1623 SITE 1 AC6 3 ALA A 130 ALA A1504 HOH A1740 SITE 1 AC7 8 ASP A 182 ASP A 232 HIS A 315 HIS A 333 SITE 2 AC7 8 ZN A1502 K A1503 HOH A1814 HOH A1871 SITE 1 AC8 7 ASP B 182 ASP B 232 HIS B 315 HIS B 333 SITE 2 AC8 7 ZN B1501 K B1504 HOH B1749 SITE 1 AC9 12 LYS A 162 ALA A 165 LEU A 170 SER A 172 SITE 2 AC9 12 SER A 187 TYR A 204 LEU A 206 ASN A 207 SITE 3 AC9 12 PRO A 208 HOH A1530 HOH A1611 HOH A1881 CRYST1 105.980 105.980 140.630 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009436 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007111 0.00000