data_1TC3 # _entry.id 1TC3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1TC3 pdb_00001tc3 10.2210/pdb1tc3/pdb RCSB PDE0128 ? ? WWPDB D_1000176606 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-11-21 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1TC3 _pdbx_database_status.recvd_initial_deposition_date 1997-07-07 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Van Pouderoyen, G.' 1 'Ketting, R.F.' 2 'Perrakis, A.' 3 'Plasterk, R.H.A.' 4 'Sixma, T.K.' 5 # _citation.id primary _citation.title 'Crystal structure of the specific DNA-binding domain of Tc3 transposase of C.elegans in complex with transposon DNA.' _citation.journal_abbrev 'EMBO J.' _citation.journal_volume 16 _citation.page_first 6044 _citation.page_last 6054 _citation.year 1997 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9312061 _citation.pdbx_database_id_DOI 10.1093/emboj/16.19.6044 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'van Pouderoyen, G.' 1 ? primary 'Ketting, R.F.' 2 ? primary 'Perrakis, A.' 3 ? primary 'Plasterk, R.H.' 4 ? primary 'Sixma, T.K.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*GP*GP*GP*GP*GP*GP*TP*CP*CP*TP*AP*TP*AP*GP*A P*AP*CP*TP*T)-3') ; 6543.232 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*GP*TP*TP*CP*TP*AP*TP*AP*GP*GP*AP*CP*CP*CP*CP*C P*CP*CP*T)-3') ; 6029.904 1 ? ? ? ? 3 polymer man 'PROTEIN (TC3 TRANSPOSASE)' 5813.720 1 ? 'C-TERMINAL 6-HIS TAG' 'SPECIFIC DNA BINDING DOMAIN, RESIDUES 2 - 52' ? 4 water nat water 18.015 49 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DA)(DG)(DG)(DG)(DG)(DG)(DG)(DG)(DT)(DC)(DC)(DT)(DA)(DT)(DA)(DG)(DA)(DA)(DC)(DT) (DT) ; AGGGGGGGTCCTATAGAACTT A ? 2 polydeoxyribonucleotide no no '(DA)(DG)(DT)(DT)(DC)(DT)(DA)(DT)(DA)(DG)(DG)(DA)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DT)' AGTTCTATAGGACCCCCCCT B ? 3 'polypeptide(L)' no no PRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTS PRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTS C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DT n 1 10 DC n 1 11 DC n 1 12 DT n 1 13 DA n 1 14 DT n 1 15 DA n 1 16 DG n 1 17 DA n 1 18 DA n 1 19 DC n 1 20 DT n 1 21 DT n 2 1 DA n 2 2 DG n 2 3 DT n 2 4 DT n 2 5 DC n 2 6 DT n 2 7 DA n 2 8 DT n 2 9 DA n 2 10 DG n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DC n 2 15 DC n 2 16 DC n 2 17 DC n 2 18 DC n 2 19 DC n 2 20 DT n 3 1 PRO n 3 2 ARG n 3 3 GLY n 3 4 SER n 3 5 ALA n 3 6 LEU n 3 7 SER n 3 8 ASP n 3 9 THR n 3 10 GLU n 3 11 ARG n 3 12 ALA n 3 13 GLN n 3 14 LEU n 3 15 ASP n 3 16 VAL n 3 17 MET n 3 18 LYS n 3 19 LEU n 3 20 LEU n 3 21 ASN n 3 22 VAL n 3 23 SER n 3 24 LEU n 3 25 HIS n 3 26 GLU n 3 27 MET n 3 28 SER n 3 29 ARG n 3 30 LYS n 3 31 ILE n 3 32 SER n 3 33 ARG n 3 34 SER n 3 35 ARG n 3 36 HIS n 3 37 CYS n 3 38 ILE n 3 39 ARG n 3 40 VAL n 3 41 TYR n 3 42 LEU n 3 43 LYS n 3 44 ASP n 3 45 PRO n 3 46 VAL n 3 47 SER n 3 48 TYR n 3 49 GLY n 3 50 THR n 3 51 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Caenorhabditis _entity_src_gen.pdbx_gene_src_gene TC3A _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain BERGERAC _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant TR679 _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle NUCLEUS _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene 'TC3A N1-65' _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type PET3C _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PRP1200 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DA 13 13 13 DA A A . n A 1 14 DT 14 14 14 DT T A . n A 1 15 DA 15 15 15 DA A A . n A 1 16 DG 16 16 16 DG G A . n A 1 17 DA 17 17 17 DA A A . n A 1 18 DA 18 18 18 DA A A . n A 1 19 DC 19 19 19 DC C A . n A 1 20 DT 20 20 20 DT T A . n A 1 21 DT 21 21 21 DT T A . n B 2 1 DA 1 101 101 DA A B . n B 2 2 DG 2 102 102 DG G B . n B 2 3 DT 3 103 103 DT T B . n B 2 4 DT 4 104 104 DT T B . n B 2 5 DC 5 105 105 DC C B . n B 2 6 DT 6 106 106 DT T B . n B 2 7 DA 7 107 107 DA A B . n B 2 8 DT 8 108 108 DT T B . n B 2 9 DA 9 109 109 DA A B . n B 2 10 DG 10 110 110 DG G B . n B 2 11 DG 11 111 111 DG G B . n B 2 12 DA 12 112 112 DA A B . n B 2 13 DC 13 113 113 DC C B . n B 2 14 DC 14 114 114 DC C B . n B 2 15 DC 15 115 115 DC C B . n B 2 16 DC 16 116 116 DC C B . n B 2 17 DC 17 117 117 DC C B . n B 2 18 DC 18 118 118 DC C B . n B 2 19 DC 19 119 119 DC C B . n B 2 20 DT 20 120 120 DT T B . n C 3 1 PRO 1 202 202 PRO PRO C . n C 3 2 ARG 2 203 203 ARG ARG C . n C 3 3 GLY 3 204 204 GLY GLY C . n C 3 4 SER 4 205 205 SER SER C . n C 3 5 ALA 5 206 206 ALA ALA C . n C 3 6 LEU 6 207 207 LEU LEU C . n C 3 7 SER 7 208 208 SER SER C . n C 3 8 ASP 8 209 209 ASP ASP C . n C 3 9 THR 9 210 210 THR THR C . n C 3 10 GLU 10 211 211 GLU GLU C . n C 3 11 ARG 11 212 212 ARG ARG C . n C 3 12 ALA 12 213 213 ALA ALA C . n C 3 13 GLN 13 214 214 GLN GLN C . n C 3 14 LEU 14 215 215 LEU LEU C . n C 3 15 ASP 15 216 216 ASP ASP C . n C 3 16 VAL 16 217 217 VAL VAL C . n C 3 17 MET 17 218 218 MET MET C . n C 3 18 LYS 18 219 219 LYS LYS C . n C 3 19 LEU 19 220 220 LEU LEU C . n C 3 20 LEU 20 221 221 LEU LEU C . n C 3 21 ASN 21 222 222 ASN ASN C . n C 3 22 VAL 22 223 223 VAL VAL C . n C 3 23 SER 23 224 224 SER SER C . n C 3 24 LEU 24 225 225 LEU LEU C . n C 3 25 HIS 25 226 226 HIS HIS C . n C 3 26 GLU 26 227 227 GLU GLU C . n C 3 27 MET 27 228 228 MET MET C . n C 3 28 SER 28 229 229 SER SER C . n C 3 29 ARG 29 230 230 ARG ARG C . n C 3 30 LYS 30 231 231 LYS LYS C . n C 3 31 ILE 31 232 232 ILE ILE C . n C 3 32 SER 32 233 233 SER SER C . n C 3 33 ARG 33 234 234 ARG ARG C . n C 3 34 SER 34 235 235 SER SER C . n C 3 35 ARG 35 236 236 ARG ARG C . n C 3 36 HIS 36 237 237 HIS HIS C . n C 3 37 CYS 37 238 238 CYS CYS C . n C 3 38 ILE 38 239 239 ILE ILE C . n C 3 39 ARG 39 240 240 ARG ARG C . n C 3 40 VAL 40 241 241 VAL VAL C . n C 3 41 TYR 41 242 242 TYR TYR C . n C 3 42 LEU 42 243 243 LEU LEU C . n C 3 43 LYS 43 244 244 LYS LYS C . n C 3 44 ASP 44 245 245 ASP ASP C . n C 3 45 PRO 45 246 246 PRO PRO C . n C 3 46 VAL 46 247 247 VAL VAL C . n C 3 47 SER 47 248 248 SER SER C . n C 3 48 TYR 48 249 249 TYR TYR C . n C 3 49 GLY 49 250 250 GLY GLY C . n C 3 50 THR 50 251 251 THR THR C . n C 3 51 SER 51 252 252 SER SER C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 302 302 HOH HOH A . D 4 HOH 2 306 306 HOH HOH A . D 4 HOH 3 307 307 HOH HOH A . D 4 HOH 4 308 308 HOH HOH A . D 4 HOH 5 309 309 HOH HOH A . D 4 HOH 6 312 312 HOH HOH A . D 4 HOH 7 314 314 HOH HOH A . D 4 HOH 8 315 315 HOH HOH A . D 4 HOH 9 316 316 HOH HOH A . D 4 HOH 10 318 318 HOH HOH A . D 4 HOH 11 319 319 HOH HOH A . D 4 HOH 12 322 322 HOH HOH A . D 4 HOH 13 324 324 HOH HOH A . D 4 HOH 14 326 326 HOH HOH A . D 4 HOH 15 328 328 HOH HOH A . D 4 HOH 16 329 329 HOH HOH A . D 4 HOH 17 332 332 HOH HOH A . D 4 HOH 18 333 333 HOH HOH A . D 4 HOH 19 334 334 HOH HOH A . D 4 HOH 20 336 336 HOH HOH A . D 4 HOH 21 346 346 HOH HOH A . E 4 HOH 1 305 305 HOH HOH B . E 4 HOH 2 310 310 HOH HOH B . E 4 HOH 3 313 313 HOH HOH B . E 4 HOH 4 320 320 HOH HOH B . E 4 HOH 5 323 323 HOH HOH B . E 4 HOH 6 339 339 HOH HOH B . E 4 HOH 7 341 341 HOH HOH B . E 4 HOH 8 343 343 HOH HOH B . E 4 HOH 9 344 344 HOH HOH B . E 4 HOH 10 345 345 HOH HOH B . F 4 HOH 1 301 301 HOH HOH C . F 4 HOH 2 303 303 HOH HOH C . F 4 HOH 3 304 304 HOH HOH C . F 4 HOH 4 311 311 HOH HOH C . F 4 HOH 5 317 317 HOH HOH C . F 4 HOH 6 321 321 HOH HOH C . F 4 HOH 7 325 325 HOH HOH C . F 4 HOH 8 327 327 HOH HOH C . F 4 HOH 9 330 330 HOH HOH C . F 4 HOH 10 331 331 HOH HOH C . F 4 HOH 11 335 335 HOH HOH C . F 4 HOH 12 337 337 HOH HOH C . F 4 HOH 13 338 338 HOH HOH C . F 4 HOH 14 340 340 HOH HOH C . F 4 HOH 15 342 342 HOH HOH C . F 4 HOH 16 347 347 HOH HOH C . F 4 HOH 17 348 348 HOH HOH C . F 4 HOH 18 349 349 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASES phasing . ? 1 TNT refinement 5-E ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1TC3 _cell.length_a 37.180 _cell.length_b 202.790 _cell.length_c 62.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TC3 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 # _exptl.entry_id 1TC3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_percent_sol 55.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;PROTEIN/DNA COMPLEX WAS CRYSTALLIZED FROM 15% MPD, 100 MM NACL, 20 MM CACL2, 10 MM DTT, 50 MM NA ACETATE PH 5.5, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 NACL ? ? ? 1 4 1 CACL2 ? ? ? 1 5 1 DTT ? ? ? 1 6 1 'NA ACETATE' ? ? ? 1 7 2 WATER ? ? ? 1 8 2 MPD ? ? ? 1 9 2 NACL ? ? ? 1 10 2 CACL2 ? ? ? 1 11 2 DTT ? ? ? 1 12 2 'NA ACETATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 113.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-08-01 _diffrn_detector.details 'BW7A SYSTEM' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'BW7A SYSTEM' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7A' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1TC3 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F 0.000 _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.450 _reflns.number_obs 8089 _reflns.number_all ? _reflns.percent_possible_obs 89.700 _reflns.pdbx_Rmerge_I_obs 0.0550000 _reflns.pdbx_Rsym_value 0.0550000 _reflns.pdbx_netI_over_sigmaI 19.400 _reflns.B_iso_Wilson_estimate 58.50 _reflns.pdbx_redundancy 8.800 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.450 _reflns_shell.d_res_low 2.510 _reflns_shell.percent_possible_all 67.00 _reflns_shell.Rmerge_I_obs 0.5040000 _reflns_shell.pdbx_Rsym_value 0.5040000 _reflns_shell.meanI_over_sigI_obs 1.930 _reflns_shell.pdbx_redundancy 3.000 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1TC3 _refine.ls_number_reflns_obs 8071 _refine.ls_number_reflns_all 8071 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.450 _refine.ls_percent_reflns_obs 89.000 _refine.ls_R_factor_obs 0.2340000 _refine.ls_R_factor_all 0.2340000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.3180000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 372 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'TRONRUD ET AL.' _refine.solvent_model_param_ksol 0.750 _refine.solvent_model_param_bsol 150.0 _refine.pdbx_ls_cross_valid_method 'R FREE THROUGHOUT' _refine.details 'X-PLOR AND REFMAC/ARP WERE USED IN EARLIER STAGES OF REFINEMENT.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model 'TNT BCORREL' _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 404 _refine_hist.pdbx_number_atoms_nucleic_acid 834 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 49 _refine_hist.number_atoms_total 1287 _refine_hist.d_res_high 2.450 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.013 ? 0.800 1343 'X-RAY DIFFRACTION' ? t_angle_deg 2.207 ? 1.300 1902 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 20.44 ? 0.000 738 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.005 ? 2.000 7 'X-RAY DIFFRACTION' ? t_gen_planes 0.017 ? 5.000 101 'X-RAY DIFFRACTION' ? t_it 5.909 ? 1.000 1287 'X-RAY DIFFRACTION' ? t_nbd 0.071 ? 10.00 25 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1TC3 _pdbx_refine.R_factor_all_no_cutoff 0.2340000 _pdbx_refine.R_factor_obs_no_cutoff 0.2340000 _pdbx_refine.free_R_factor_no_cutoff 0.3180000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.00 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 372.00 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1TC3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1TC3 _struct.title 'TRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TC3 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'TRANSPOSASE, DNA BINDING, HELIX-TURN-HELIX, TC1/MARINER FAMILY, COMPLEX (TRANSPOSASE-DNA), DNA BINDING PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TC3A_CAEEL 3 ? ? P34257 ? 2 PDB 1TC3 1 ? ? 1TC3 ? 3 PDB 1TC3 2 ? ? 1TC3 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1TC3 C 1 ? 51 ? P34257 2 ? 52 ? 202 252 2 2 1TC3 A 1 ? 21 ? 1TC3 1 ? 21 ? 1 21 3 3 1TC3 B 1 ? 20 ? 1TC3 101 ? 120 ? 101 120 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1TC3 _struct_ref_seq_dif.mon_id VAL _struct_ref_seq_dif.pdbx_pdb_strand_id C _struct_ref_seq_dif.seq_num 40 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P34257 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 41 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 241 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP C 8 ? LEU C 19 ? ASP C 209 LEU C 220 1 ? 12 HELX_P HELX_P2 2 LEU C 24 ? ILE C 31 ? LEU C 225 ILE C 232 1 ? 8 HELX_P HELX_P3 3 ARG C 35 ? LYS C 43 ? ARG C 236 LYS C 244 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 19 N3 ? ? A DG 2 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 19 O2 ? ? A DG 2 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 19 N4 ? ? A DG 2 B DC 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 18 N3 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 18 O2 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 18 N4 ? ? A DG 3 B DC 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 17 N3 ? ? A DG 4 B DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 17 O2 ? ? A DG 4 B DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 17 N4 ? ? A DG 4 B DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 16 N3 ? ? A DG 5 B DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 16 O2 ? ? A DG 5 B DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 16 N4 ? ? A DG 5 B DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 15 N3 ? ? A DG 6 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 15 O2 ? ? A DG 6 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 15 N4 ? ? A DG 6 B DC 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 7 B DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 7 B DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 7 B DC 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 8 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 8 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 8 B DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 9 B DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 9 B DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 10 B DG 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 11 B DG 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 11 B DG 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 11 B DG 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 12 B DA 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 9 N6 ? ? A DT 12 B DA 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 13 B DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 13 B DT 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 14 B DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 14 B DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 15 B DT 106 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog37 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 16 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 16 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 16 B DC 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 17 B DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 17 B DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DA 18 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 18 B DT 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 18 B DT 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 19 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 19 B DG 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 19 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 19 B DG 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 19 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 19 B DG 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DT 20 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 20 B DA 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DT 20 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 20 B DA 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.368 1.419 -0.051 0.006 N 2 1 "O3'" A DG 5 ? ? "C3'" A DG 5 ? ? 1.359 1.419 -0.060 0.006 N 3 1 "O3'" A DG 8 ? ? "C3'" A DG 8 ? ? 1.361 1.419 -0.058 0.006 N 4 1 "O3'" B DC 118 ? ? "C3'" B DC 118 ? ? 1.375 1.419 -0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DA 1 ? ? "O3'" A DA 1 ? ? P A DG 2 ? ? 130.30 119.70 10.60 1.20 Y 2 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.01 104.50 -3.49 0.40 N 3 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 101.14 108.00 -6.86 0.70 N 4 1 C8 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 135.03 127.00 8.03 1.30 N 5 1 C4 A DG 4 ? ? N9 A DG 4 ? ? "C1'" A DG 4 ? ? 116.56 126.50 -9.94 1.30 N 6 1 "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 104.18 109.40 -5.22 0.80 N 7 1 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 98.24 104.50 -6.26 0.40 N 8 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 98.84 104.50 -5.66 0.40 N 9 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 97.09 102.20 -5.11 0.70 N 10 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 99.18 104.50 -5.32 0.40 N 11 1 "C3'" A DG 7 ? ? "C2'" A DG 7 ? ? "C1'" A DG 7 ? ? 97.17 102.40 -5.23 0.80 N 12 1 C8 A DG 8 ? ? N9 A DG 8 ? ? "C1'" A DG 8 ? ? 139.33 127.00 12.33 1.30 N 13 1 C4 A DG 8 ? ? N9 A DG 8 ? ? "C1'" A DG 8 ? ? 115.21 126.50 -11.29 1.30 N 14 1 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DT 9 ? ? 112.00 119.70 -7.70 1.20 Y 15 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 114.32 108.30 6.02 0.30 N 16 1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 96.29 102.40 -6.11 0.80 N 17 1 "C3'" A DT 12 ? ? "C2'" A DT 12 ? ? "C1'" A DT 12 ? ? 95.84 102.40 -6.56 0.80 N 18 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.25 108.30 3.95 0.30 N 19 1 "C1'" A DT 14 ? ? "O4'" A DT 14 ? ? "C4'" A DT 14 ? ? 103.31 110.10 -6.79 1.00 N 20 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? "C2'" A DT 14 ? ? 101.08 105.90 -4.82 0.80 N 21 1 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 113.66 108.30 5.36 0.30 N 22 1 "C1'" A DA 18 ? ? "O4'" A DA 18 ? ? "C4'" A DA 18 ? ? 98.20 110.10 -11.90 1.00 N 23 1 "C3'" A DA 18 ? ? "O3'" A DA 18 ? ? P A DC 19 ? ? 128.24 119.70 8.54 1.20 Y 24 1 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.22 108.30 2.92 0.30 N 25 1 "C3'" A DC 19 ? ? "O3'" A DC 19 ? ? P A DT 20 ? ? 127.38 119.70 7.68 1.20 Y 26 1 "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? "C3'" A DT 20 ? ? 98.24 104.50 -6.26 0.40 N 27 1 "C1'" A DT 20 ? ? "O4'" A DT 20 ? ? "C4'" A DT 20 ? ? 102.77 110.10 -7.33 1.00 N 28 1 C6 A DT 20 ? ? N1 A DT 20 ? ? "C1'" A DT 20 ? ? 105.77 120.40 -14.63 1.50 N 29 1 C2 A DT 20 ? ? N1 A DT 20 ? ? "C1'" A DT 20 ? ? 129.96 118.20 11.76 1.60 N 30 1 "O4'" A DT 21 ? ? "C1'" A DT 21 ? ? N1 A DT 21 ? ? 111.94 108.30 3.64 0.30 N 31 1 C8 B DG 102 ? ? N9 B DG 102 ? ? "C1'" B DG 102 ? ? 135.93 127.00 8.93 1.30 N 32 1 C4 B DG 102 ? ? N9 B DG 102 ? ? "C1'" B DG 102 ? ? 117.71 126.50 -8.79 1.30 N 33 1 "O4'" B DT 103 ? ? "C4'" B DT 103 ? ? "C3'" B DT 103 ? ? 101.14 104.50 -3.36 0.40 N 34 1 "O4'" B DT 103 ? ? "C1'" B DT 103 ? ? N1 B DT 103 ? ? 114.54 108.30 6.24 0.30 N 35 1 "O4'" B DC 105 ? ? "C4'" B DC 105 ? ? "C3'" B DC 105 ? ? 101.89 104.50 -2.61 0.40 N 36 1 C6 B DC 105 ? ? N1 B DC 105 ? ? C2 B DC 105 ? ? 123.50 120.30 3.20 0.40 N 37 1 "O4'" B DT 106 ? ? "C1'" B DT 106 ? ? N1 B DT 106 ? ? 114.11 108.30 5.81 0.30 N 38 1 P B DT 108 ? ? "O5'" B DT 108 ? ? "C5'" B DT 108 ? ? 110.86 120.90 -10.04 1.60 N 39 1 "O4'" B DG 111 ? ? "C1'" B DG 111 ? ? N9 B DG 111 ? ? 111.35 108.30 3.05 0.30 N 40 1 "O4'" B DC 113 ? ? "C4'" B DC 113 ? ? "C3'" B DC 113 ? ? 101.01 104.50 -3.49 0.40 N 41 1 C6 B DC 114 ? ? N1 B DC 114 ? ? "C1'" B DC 114 ? ? 129.73 120.80 8.93 1.20 N 42 1 C2 B DC 114 ? ? N1 B DC 114 ? ? "C1'" B DC 114 ? ? 108.34 118.80 -10.46 1.10 N 43 1 "O4'" B DC 115 ? ? "C4'" B DC 115 ? ? "C3'" B DC 115 ? ? 100.84 104.50 -3.66 0.40 N 44 1 P B DC 117 ? ? "O5'" B DC 117 ? ? "C5'" B DC 117 ? ? 108.40 120.90 -12.50 1.60 N 45 1 "O4'" B DC 117 ? ? "C1'" B DC 117 ? ? "C2'" B DC 117 ? ? 110.09 106.80 3.29 0.50 N 46 1 "O4'" B DC 117 ? ? "C1'" B DC 117 ? ? N1 B DC 117 ? ? 110.17 108.30 1.87 0.30 N 47 1 "O4'" B DC 118 ? ? "C1'" B DC 118 ? ? N1 B DC 118 ? ? 111.74 108.30 3.44 0.30 N 48 1 C2 B DC 119 ? ? N1 B DC 119 ? ? "C1'" B DC 119 ? ? 111.15 118.80 -7.65 1.10 N 49 1 NE C ARG 230 ? ? CZ C ARG 230 ? ? NH2 C ARG 230 ? ? 116.42 120.30 -3.88 0.50 N 50 1 CB C ASP 245 ? ? CG C ASP 245 ? ? OD2 C ASP 245 ? ? 112.04 118.30 -6.26 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG C 240 ? ? -55.37 -71.64 2 1 ASP C 245 ? ? -172.11 89.48 3 1 SER C 248 ? ? -48.17 -18.22 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PRO N N N N 393 PRO CA C N S 394 PRO C C N N 395 PRO O O N N 396 PRO CB C N N 397 PRO CG C N N 398 PRO CD C N N 399 PRO OXT O N N 400 PRO H H N N 401 PRO HA H N N 402 PRO HB2 H N N 403 PRO HB3 H N N 404 PRO HG2 H N N 405 PRO HG3 H N N 406 PRO HD2 H N N 407 PRO HD3 H N N 408 PRO HXT H N N 409 SER N N N N 410 SER CA C N S 411 SER C C N N 412 SER O O N N 413 SER CB C N N 414 SER OG O N N 415 SER OXT O N N 416 SER H H N N 417 SER H2 H N N 418 SER HA H N N 419 SER HB2 H N N 420 SER HB3 H N N 421 SER HG H N N 422 SER HXT H N N 423 THR N N N N 424 THR CA C N S 425 THR C C N N 426 THR O O N N 427 THR CB C N R 428 THR OG1 O N N 429 THR CG2 C N N 430 THR OXT O N N 431 THR H H N N 432 THR H2 H N N 433 THR HA H N N 434 THR HB H N N 435 THR HG1 H N N 436 THR HG21 H N N 437 THR HG22 H N N 438 THR HG23 H N N 439 THR HXT H N N 440 TYR N N N N 441 TYR CA C N S 442 TYR C C N N 443 TYR O O N N 444 TYR CB C N N 445 TYR CG C Y N 446 TYR CD1 C Y N 447 TYR CD2 C Y N 448 TYR CE1 C Y N 449 TYR CE2 C Y N 450 TYR CZ C Y N 451 TYR OH O N N 452 TYR OXT O N N 453 TYR H H N N 454 TYR H2 H N N 455 TYR HA H N N 456 TYR HB2 H N N 457 TYR HB3 H N N 458 TYR HD1 H N N 459 TYR HD2 H N N 460 TYR HE1 H N N 461 TYR HE2 H N N 462 TYR HH H N N 463 TYR HXT H N N 464 VAL N N N N 465 VAL CA C N S 466 VAL C C N N 467 VAL O O N N 468 VAL CB C N N 469 VAL CG1 C N N 470 VAL CG2 C N N 471 VAL OXT O N N 472 VAL H H N N 473 VAL H2 H N N 474 VAL HA H N N 475 VAL HB H N N 476 VAL HG11 H N N 477 VAL HG12 H N N 478 VAL HG13 H N N 479 VAL HG21 H N N 480 VAL HG22 H N N 481 VAL HG23 H N N 482 VAL HXT H N N 483 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PRO N CA sing N N 386 PRO N CD sing N N 387 PRO N H sing N N 388 PRO CA C sing N N 389 PRO CA CB sing N N 390 PRO CA HA sing N N 391 PRO C O doub N N 392 PRO C OXT sing N N 393 PRO CB CG sing N N 394 PRO CB HB2 sing N N 395 PRO CB HB3 sing N N 396 PRO CG CD sing N N 397 PRO CG HG2 sing N N 398 PRO CG HG3 sing N N 399 PRO CD HD2 sing N N 400 PRO CD HD3 sing N N 401 PRO OXT HXT sing N N 402 SER N CA sing N N 403 SER N H sing N N 404 SER N H2 sing N N 405 SER CA C sing N N 406 SER CA CB sing N N 407 SER CA HA sing N N 408 SER C O doub N N 409 SER C OXT sing N N 410 SER CB OG sing N N 411 SER CB HB2 sing N N 412 SER CB HB3 sing N N 413 SER OG HG sing N N 414 SER OXT HXT sing N N 415 THR N CA sing N N 416 THR N H sing N N 417 THR N H2 sing N N 418 THR CA C sing N N 419 THR CA CB sing N N 420 THR CA HA sing N N 421 THR C O doub N N 422 THR C OXT sing N N 423 THR CB OG1 sing N N 424 THR CB CG2 sing N N 425 THR CB HB sing N N 426 THR OG1 HG1 sing N N 427 THR CG2 HG21 sing N N 428 THR CG2 HG22 sing N N 429 THR CG2 HG23 sing N N 430 THR OXT HXT sing N N 431 TYR N CA sing N N 432 TYR N H sing N N 433 TYR N H2 sing N N 434 TYR CA C sing N N 435 TYR CA CB sing N N 436 TYR CA HA sing N N 437 TYR C O doub N N 438 TYR C OXT sing N N 439 TYR CB CG sing N N 440 TYR CB HB2 sing N N 441 TYR CB HB3 sing N N 442 TYR CG CD1 doub Y N 443 TYR CG CD2 sing Y N 444 TYR CD1 CE1 sing Y N 445 TYR CD1 HD1 sing N N 446 TYR CD2 CE2 doub Y N 447 TYR CD2 HD2 sing N N 448 TYR CE1 CZ doub Y N 449 TYR CE1 HE1 sing N N 450 TYR CE2 CZ sing Y N 451 TYR CE2 HE2 sing N N 452 TYR CZ OH sing N N 453 TYR OH HH sing N N 454 TYR OXT HXT sing N N 455 VAL N CA sing N N 456 VAL N H sing N N 457 VAL N H2 sing N N 458 VAL CA C sing N N 459 VAL CA CB sing N N 460 VAL CA HA sing N N 461 VAL C O doub N N 462 VAL C OXT sing N N 463 VAL CB CG1 sing N N 464 VAL CB CG2 sing N N 465 VAL CB HB sing N N 466 VAL CG1 HG11 sing N N 467 VAL CG1 HG12 sing N N 468 VAL CG1 HG13 sing N N 469 VAL CG2 HG21 sing N N 470 VAL CG2 HG22 sing N N 471 VAL CG2 HG23 sing N N 472 VAL OXT HXT sing N N 473 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1TC3 'double helix' 1TC3 'a-form double helix' 1TC3 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 19 1_555 -0.182 -0.266 0.583 8.566 -9.769 -8.262 1 A_DG2:DC119_B A 2 ? B 119 ? 19 1 1 A DG 3 1_555 B DC 18 1_555 0.163 -0.256 0.127 -5.719 -10.039 -3.520 2 A_DG3:DC118_B A 3 ? B 118 ? 19 1 1 A DG 4 1_555 B DC 17 1_555 -0.102 -0.248 0.421 -1.542 -7.633 -0.667 3 A_DG4:DC117_B A 4 ? B 117 ? 19 1 1 A DG 5 1_555 B DC 16 1_555 0.017 -0.326 0.083 -3.559 -6.028 1.736 4 A_DG5:DC116_B A 5 ? B 116 ? 19 1 1 A DG 6 1_555 B DC 15 1_555 -0.214 -0.239 -0.127 -3.784 -0.687 3.135 5 A_DG6:DC115_B A 6 ? B 115 ? 19 1 1 A DG 7 1_555 B DC 14 1_555 0.037 -0.222 -0.353 -8.829 -11.077 -3.033 6 A_DG7:DC114_B A 7 ? B 114 ? 19 1 1 A DG 8 1_555 B DC 13 1_555 -0.317 -0.399 -0.378 -16.061 -17.271 -3.535 7 A_DG8:DC113_B A 8 ? B 113 ? 19 1 1 A DT 9 1_555 B DA 12 1_555 0.430 -0.399 -0.045 -11.969 -14.801 12.031 8 A_DT9:DA112_B A 9 ? B 112 ? 20 1 1 A DC 10 1_555 B DG 11 1_555 0.521 -0.428 -0.341 -10.515 4.225 3.871 9 A_DC10:DG111_B A 10 ? B 111 ? 19 1 1 A DC 11 1_555 B DG 10 1_555 0.275 -0.330 0.523 -15.525 -4.193 -2.523 10 A_DC11:DG110_B A 11 ? B 110 ? 19 1 1 A DT 12 1_555 B DA 9 1_555 -0.177 -0.228 -0.127 -9.976 -5.905 -1.558 11 A_DT12:DA109_B A 12 ? B 109 ? 20 1 1 A DA 13 1_555 B DT 8 1_555 -0.567 -0.494 0.474 0.669 -7.272 -0.771 12 A_DA13:DT108_B A 13 ? B 108 ? 20 1 1 A DT 14 1_555 B DA 7 1_555 -0.338 -0.354 0.326 -3.991 -14.341 -5.831 13 A_DT14:DA107_B A 14 ? B 107 ? 20 1 1 A DA 15 1_555 B DT 6 1_555 -0.694 -0.018 -0.044 -2.977 -0.453 12.914 14 A_DA15:DT106_B A 15 ? B 106 ? ? 1 1 A DG 16 1_555 B DC 5 1_555 -0.515 -0.067 -0.614 3.465 -9.271 12.047 15 A_DG16:DC105_B A 16 ? B 105 ? 19 1 1 A DA 17 1_555 B DT 4 1_555 -0.659 -0.147 -0.123 12.322 -13.655 3.927 16 A_DA17:DT104_B A 17 ? B 104 ? 20 1 1 A DA 18 1_555 B DT 3 1_555 -0.412 -0.380 0.732 21.100 -23.756 -1.556 17 A_DA18:DT103_B A 18 ? B 103 ? 20 1 1 A DC 19 1_555 B DG 2 1_555 0.399 -0.546 0.332 -5.207 -10.245 -3.283 18 A_DC19:DG102_B A 19 ? B 102 ? 19 1 1 A DT 20 1_555 B DA 1 1_555 0.565 -0.486 0.462 -21.175 -8.339 -4.722 19 A_DT20:DA101_B A 20 ? B 101 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 19 1_555 A DG 3 1_555 B DC 18 1_555 0.185 -1.130 3.653 5.583 3.882 39.727 -2.127 0.429 3.525 5.662 -8.143 40.282 1 AA_DG2DG3:DC118DC119_BB A 2 ? B 119 ? A 3 ? B 118 ? 1 A DG 3 1_555 B DC 18 1_555 A DG 4 1_555 B DC 17 1_555 0.431 -1.665 2.936 -3.136 10.315 29.993 -4.563 -1.249 2.202 19.169 5.828 31.830 2 AA_DG3DG4:DC117DC118_BB A 3 ? B 118 ? A 4 ? B 117 ? 1 A DG 4 1_555 B DC 17 1_555 A DG 5 1_555 B DC 16 1_555 0.172 -2.237 3.129 1.306 6.718 31.311 -5.129 -0.102 2.609 12.264 -2.383 32.032 3 AA_DG4DG5:DC116DC117_BB A 4 ? B 117 ? A 5 ? B 116 ? 1 A DG 5 1_555 B DC 16 1_555 A DG 6 1_555 B DC 15 1_555 0.078 -1.916 3.326 3.670 8.741 27.621 -5.579 0.590 2.599 17.662 -7.415 29.173 4 AA_DG5DG6:DC115DC116_BB A 5 ? B 116 ? A 6 ? B 115 ? 1 A DG 6 1_555 B DC 15 1_555 A DG 7 1_555 B DC 14 1_555 0.496 -1.905 3.409 4.226 5.605 31.563 -4.419 -0.140 3.073 10.148 -7.651 32.315 5 AA_DG6DG7:DC114DC115_BB A 6 ? B 115 ? A 7 ? B 114 ? 1 A DG 7 1_555 B DC 14 1_555 A DG 8 1_555 B DC 13 1_555 0.178 -2.142 3.425 4.683 10.285 27.301 -6.261 0.585 2.470 20.701 -9.426 29.506 6 AA_DG7DG8:DC113DC114_BB A 7 ? B 114 ? A 8 ? B 113 ? 1 A DG 8 1_555 B DC 13 1_555 A DT 9 1_555 B DA 12 1_555 -0.074 -0.422 3.153 -0.688 5.915 35.563 -1.482 0.026 3.047 9.601 1.116 36.042 7 AA_DG8DT9:DA112DC113_BB A 8 ? B 113 ? A 9 ? B 112 ? 1 A DT 9 1_555 B DA 12 1_555 A DC 10 1_555 B DG 11 1_555 0.251 0.760 3.455 3.306 0.879 37.831 1.049 0.062 3.480 1.352 -5.087 37.980 8 AA_DT9DC10:DG111DA112_BB A 9 ? B 112 ? A 10 ? B 111 ? 1 A DC 10 1_555 B DG 11 1_555 A DC 11 1_555 B DG 10 1_555 -1.728 0.690 3.767 -7.179 -1.099 31.391 1.481 1.569 4.027 -1.997 13.051 32.199 9 AA_DC10DC11:DG110DG111_BB A 10 ? B 111 ? A 11 ? B 110 ? 1 A DC 11 1_555 B DG 10 1_555 A DT 12 1_555 B DA 9 1_555 0.352 -0.324 3.190 5.359 6.165 26.981 -2.073 0.499 3.054 12.843 -11.165 28.168 10 AA_DC11DT12:DA109DG110_BB A 11 ? B 110 ? A 12 ? B 109 ? 1 A DT 12 1_555 B DA 9 1_555 A DA 13 1_555 B DT 8 1_555 0.414 1.894 3.062 -6.046 -2.738 45.599 2.636 -1.003 2.875 -3.511 7.752 46.054 11 AA_DT12DA13:DT108DA109_BB A 12 ? B 109 ? A 13 ? B 108 ? 1 A DA 13 1_555 B DT 8 1_555 A DT 14 1_555 B DA 7 1_555 -0.341 -0.182 3.443 1.728 -3.417 31.686 0.322 0.950 3.420 -6.229 -3.151 31.910 12 AA_DA13DT14:DA107DT108_BB A 13 ? B 108 ? A 14 ? B 107 ? 1 A DT 14 1_555 B DA 7 1_555 A DA 15 1_555 B DT 6 1_555 0.293 2.185 3.365 -2.745 -6.207 49.537 3.031 -0.543 3.069 -7.368 3.259 49.971 13 AA_DT14DA15:DT106DA107_BB A 14 ? B 107 ? A 15 ? B 106 ? 1 A DA 15 1_555 B DT 6 1_555 A DG 16 1_555 B DC 5 1_555 0.325 1.290 3.246 -0.151 15.172 23.413 -1.363 -0.716 3.430 33.280 0.331 27.842 14 AA_DA15DG16:DC105DT106_BB A 15 ? B 106 ? A 16 ? B 105 ? 1 A DG 16 1_555 B DC 5 1_555 A DA 17 1_555 B DT 4 1_555 -0.685 0.302 2.960 -4.961 0.677 35.866 0.399 0.460 3.030 1.093 8.008 36.202 15 AA_DG16DA17:DT104DC105_BB A 16 ? B 105 ? A 17 ? B 104 ? 1 A DA 17 1_555 B DT 4 1_555 A DA 18 1_555 B DT 3 1_555 -0.059 -0.025 2.966 -6.652 -0.945 34.677 0.085 -0.797 2.926 -1.568 11.032 35.302 16 AA_DA17DA18:DT103DT104_BB A 17 ? B 104 ? A 18 ? B 103 ? 1 A DA 18 1_555 B DT 3 1_555 A DC 19 1_555 B DG 2 1_555 0.375 -1.028 3.934 4.891 1.285 38.269 -1.746 0.161 3.915 1.949 -7.421 38.589 17 AA_DA18DC19:DG102DT103_BB A 18 ? B 103 ? A 19 ? B 102 ? 1 A DC 19 1_555 B DG 2 1_555 A DT 20 1_555 B DA 1 1_555 -0.186 -1.068 3.614 1.909 4.778 37.156 -2.340 0.561 3.442 7.454 -2.978 37.498 18 AA_DC19DT20:DA101DG102_BB A 19 ? B 102 ? A 20 ? B 101 ? # _atom_sites.entry_id 1TC3 _atom_sites.fract_transf_matrix[1][1] 0.026896 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004931 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016093 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_