HEADER OXIDOREDUCTASE(FLAVOENZYME) 14-JAN-94 1TDE TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN REDUCTASE REFINED AT TITLE 2 2 ANGSTROM RESOLUTION: IMPLICATIONS FOR A LARGE CONFORMATIONAL CHANGE TITLE 3 DURING CATALYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.6.4.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS OXIDOREDUCTASE(FLAVOENZYME) EXPDTA X-RAY DIFFRACTION AUTHOR G.WAKSMAN,T.S.R.KRISHNA,C.H.WILLIAMS JUNIOR,J.KURIYAN REVDAT 4 13-JUL-11 1TDE 1 VERSN REVDAT 3 24-FEB-09 1TDE 1 VERSN REVDAT 2 01-APR-03 1TDE 1 JRNL REVDAT 1 30-NOV-94 1TDE 0 JRNL AUTH G.WAKSMAN,T.S.KRISHNA,C.H.WILLIAMS JR.,J.KURIYAN JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI THIOREDOXIN REDUCTASE JRNL TITL 2 REFINED AT 2 A RESOLUTION. IMPLICATIONS FOR A LARGE JRNL TITL 3 CONFORMATIONAL CHANGE DURING CATALYSIS. JRNL REF J.MOL.BIOL. V. 236 800 1994 JRNL REFN ISSN 0022-2836 JRNL PMID 8114095 JRNL DOI 10.1006/JMBI.1994.1190 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 2.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.78000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.78000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.78000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.78000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.78000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 316 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASN A 272 HH22 ARG A 311 1.25 REMARK 500 HD1 HIS A 172 HE2 HIS A 202 1.29 REMARK 500 HE ARG A 67 H2 HOH A 792 1.51 REMARK 500 HH TYR A 312 H1 HOH A 766 1.52 REMARK 500 HE21 GLN A 266 HD22 ASN A 272 1.53 REMARK 500 H LEU A 258 H1 HOH A 654 1.54 REMARK 500 H LEU A 59 H2 HOH A 664 1.55 REMARK 500 H2 HOH A 701 H2 HOH A 752 1.55 REMARK 500 HE2 HIS A 290 H2 HOH A 861 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 221 H1 HOH A 701 12554 1.20 REMARK 500 HE21 GLN A 90 HE21 GLN A 90 10664 1.38 REMARK 500 H GLY A 54 HD1 HIS A 71 7555 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 69 NE2 HIS A 69 CD2 -0.073 REMARK 500 HIS A 71 NE2 HIS A 71 CD2 -0.074 REMARK 500 HIS A 172 NE2 HIS A 172 CD2 -0.073 REMARK 500 HIS A 175 NE2 HIS A 175 CD2 -0.072 REMARK 500 HIS A 202 NE2 HIS A 202 CD2 -0.073 REMARK 500 HIS A 270 NE2 HIS A 270 CD2 -0.069 REMARK 500 HIS A 290 NE2 HIS A 290 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 52 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 52 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASN A 198 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 311 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 311 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 -107.56 -97.93 REMARK 500 ARG A 130 45.95 -140.73 REMARK 500 ASP A 213 -155.46 -101.44 REMARK 500 ASP A 224 167.75 73.59 REMARK 500 ASN A 227 77.06 61.23 REMARK 500 SER A 228 147.40 163.87 REMARK 500 ILE A 231 111.52 52.39 REMARK 500 SER A 267 -155.83 50.76 REMARK 500 THR A 276 -164.45 -75.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 198 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 740 DISTANCE = 5.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 DBREF 1TDE A 1 316 UNP P0A9P4 TRXB_ECOLI 1 316 SEQRES 1 A 316 GLY THR THR LYS HIS SER LYS LEU LEU ILE LEU GLY SER SEQRES 2 A 316 GLY PRO ALA GLY TYR THR ALA ALA VAL TYR ALA ALA ARG SEQRES 3 A 316 ALA ASN LEU GLN PRO VAL LEU ILE THR GLY MET GLU LYS SEQRES 4 A 316 GLY GLY GLN LEU THR THR THR THR GLU VAL GLU ASN TRP SEQRES 5 A 316 PRO GLY ASP PRO ASN ASP LEU THR GLY PRO LEU LEU MET SEQRES 6 A 316 GLU ARG MET HIS GLU HIS ALA THR LYS PHE GLU THR GLU SEQRES 7 A 316 ILE ILE PHE ASP HIS ILE ASN LYS VAL ASP LEU GLN ASN SEQRES 8 A 316 ARG PRO PHE ARG LEU ASN GLY ASP ASN GLY GLU TYR THR SEQRES 9 A 316 CYS ASP ALA LEU ILE ILE ALA THR GLY ALA SER ALA ARG SEQRES 10 A 316 TYR LEU GLY LEU PRO SER GLU GLU ALA PHE LYS GLY ARG SEQRES 11 A 316 GLY VAL SER ALA CYS ALA THR CYS ASP GLY PHE PHE TYR SEQRES 12 A 316 ARG ASN GLN LYS VAL ALA VAL ILE GLY GLY GLY ASN THR SEQRES 13 A 316 ALA VAL GLU GLU ALA LEU TYR LEU SER ASN ILE ALA SER SEQRES 14 A 316 GLU VAL HIS LEU ILE HIS ARG ARG ASP GLY PHE ARG ALA SEQRES 15 A 316 GLU LYS ILE LEU ILE LYS ARG LEU MET ASP LYS VAL GLU SEQRES 16 A 316 ASN GLY ASN ILE ILE LEU HIS THR ASN ARG THR LEU GLU SEQRES 17 A 316 GLU VAL THR GLY ASP GLN MET GLY VAL THR GLY VAL ARG SEQRES 18 A 316 LEU ARG ASP THR GLN ASN SER ASP ASN ILE GLU SER LEU SEQRES 19 A 316 ASP VAL ALA GLY LEU PHE VAL ALA ILE GLY HIS SER PRO SEQRES 20 A 316 ASN THR ALA ILE PHE GLU GLY GLN LEU GLU LEU GLU ASN SEQRES 21 A 316 GLY TYR ILE LYS VAL GLN SER GLY ILE HIS GLY ASN ALA SEQRES 22 A 316 THR GLN THR SER ILE PRO GLY VAL PHE ALA ALA GLY ASP SEQRES 23 A 316 VAL MET ASP HIS ILE TYR ARG GLN ALA ILE THR SER ALA SEQRES 24 A 316 GLY THR GLY CYS MET ALA ALA LEU ASP ALA GLU ARG TYR SEQRES 25 A 316 LEU ASP GLY LEU HET FAD A 500 60 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *164(H2 O) HELIX 1 1 GLY A 14 ARG A 26 1 13 HELIX 2 2 GLY A 41 THR A 46 5 6 HELIX 3 3 THR A 60 PHE A 75 1 16 HELIX 4 4 LEU A 121 PHE A 127 1 7 HELIX 5 5 CYS A 135 GLY A 140 1 6 HELIX 6 6 PHE A 141 ARG A 144 5 4 HELIX 7 7 GLY A 154 SER A 165 1 12 HELIX 8 8 GLU A 183 ASN A 196 1 14 HELIX 9 9 THR A 249 GLU A 253 5 5 HELIX 10 10 GLY A 285 MET A 288 5 4 HELIX 11 11 GLN A 294 ASP A 314 1 21 SHEET 1 A 6 GLU A 78 ILE A 80 0 SHEET 2 A 6 VAL A 32 ILE A 34 1 N LEU A 33 O GLU A 78 SHEET 3 A 6 THR A 3 LEU A 11 1 O LEU A 8 N VAL A 32 SHEET 4 A 6 GLU A 102 ILE A 110 1 O GLU A 102 N LYS A 4 SHEET 5 A 6 PHE A 94 GLY A 98 -1 N PHE A 94 O CYS A 105 SHEET 6 A 6 ILE A 84 ASP A 88 -1 N ASN A 85 O ASN A 97 SHEET 1 B 5 GLU A 78 ILE A 80 0 SHEET 2 B 5 VAL A 32 ILE A 34 1 N LEU A 33 O GLU A 78 SHEET 3 B 5 THR A 3 LEU A 11 1 O LEU A 8 N VAL A 32 SHEET 4 B 5 GLU A 102 ILE A 110 1 O GLU A 102 N LYS A 4 SHEET 5 B 5 VAL A 281 ALA A 283 1 N PHE A 282 O LEU A 108 SHEET 1 C 2 ALA A 114 ALA A 116 0 SHEET 2 C 2 HIS A 245 PRO A 247 -1 N SER A 246 O SER A 115 SHEET 1 D 5 VAL A 132 SER A 133 0 SHEET 2 D 5 GLY A 238 VAL A 241 1 O LEU A 239 N SER A 133 SHEET 3 D 5 LYS A 147 ILE A 151 1 O LYS A 147 N GLY A 238 SHEET 4 D 5 GLU A 170 HIS A 175 1 O GLU A 170 N VAL A 148 SHEET 5 D 5 ILE A 199 THR A 203 1 N ILE A 200 O VAL A 171 SHEET 1 E 3 THR A 206 GLY A 212 0 SHEET 2 E 3 VAL A 217 ARG A 223 -1 N THR A 218 O THR A 211 SHEET 3 E 3 SER A 233 ASP A 235 -1 N LEU A 234 O VAL A 220 SHEET 1 F 2 LEU A 258 GLU A 259 0 SHEET 2 F 2 TYR A 262 ILE A 263 -1 O TYR A 262 N GLU A 259 SSBOND 1 CYS A 135 CYS A 138 1555 1555 2.01 CISPEP 1 ARG A 92 PRO A 93 0 -3.20 SITE 1 AC1 38 GLY A 12 SER A 13 GLY A 14 PRO A 15 SITE 2 AC1 38 ALA A 16 TYR A 23 THR A 35 GLY A 36 SITE 3 AC1 38 MET A 37 GLU A 38 GLY A 41 GLN A 42 SITE 4 AC1 38 LEU A 43 THR A 46 VAL A 49 ASN A 51 SITE 5 AC1 38 HIS A 83 ILE A 84 ALA A 111 THR A 112 SITE 6 AC1 38 GLY A 113 TYR A 118 CYS A 138 GLY A 285 SITE 7 AC1 38 ASP A 286 ARG A 293 GLN A 294 ALA A 295 SITE 8 AC1 38 SER A 298 HOH A 602 HOH A 605 HOH A 607 SITE 9 AC1 38 HOH A 613 HOH A 615 HOH A 617 HOH A 623 SITE 10 AC1 38 HOH A 675 HOH A 767 CRYST1 123.800 123.800 81.560 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008078 0.004664 0.000000 0.00000 SCALE2 0.000000 0.009327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012261 0.00000