HEADER EXTRACELLULAR MATRIX 24-MAY-04 1TDQ TITLE STRUCTURAL BASIS FOR THE INTERACTIONS BETWEEN TENASCINS AND THE C-TYPE TITLE 2 LECTIN DOMAINS FROM LECTICANS: EVIDENCE FOR A CROSS-LINKING ROLE FOR TITLE 3 TENASCINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENASCIN-R; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III REPEATS 3-5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AGGRECAN CORE PROTEIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TYPE LECTIN DOMAIN; COMPND 10 SYNONYM: CARTILAGE-SPECIFIC PROTEOGLYCAN CORE PROTEIN, CSPCP; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG-1; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: AGC1, AGC; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: EMBRYONAL KIDNEY 293-EBNA; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PCEP4 KEYWDS EXTRACELLULAR MATRIX, LECTICANS, TENASCINS, PROTEIN-PROTEIN KEYWDS 2 INTERACTIONS, C-TYPE LECTIN DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LUNDELL,A.I.OLIN,M.MOERGELIN,S.AL-KARADAGHI,A.ASPBERG,D.T.LOGAN REVDAT 5 31-MAR-21 1TDQ 1 SOURCE REMARK SEQADV LINK REVDAT 4 07-MAR-18 1TDQ 1 REMARK REVDAT 3 13-JUL-11 1TDQ 1 VERSN REVDAT 2 24-FEB-09 1TDQ 1 VERSN REVDAT 1 31-AUG-04 1TDQ 0 JRNL AUTH A.LUNDELL,A.I.OLIN,M.MOERGELIN,S.AL-KARADAGHI,A.ASPBERG, JRNL AUTH 2 D.T.LOGAN JRNL TITL STRUCTURAL BASIS FOR INTERACTIONS BETWEEN TENASCINS AND JRNL TITL 2 LECTICAN C-TYPE LECTIN DOMAINS: EVIDENCE FOR A CROSSLINKING JRNL TITL 3 ROLE FOR TENASCINS JRNL REF STRUCTURE V. 12 1495 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15296743 JRNL DOI 10.1016/J.STR.2004.05.021 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 909 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 66.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : -2.41000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.488 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3217 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2794 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4381 ; 1.296 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6522 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ; 7.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3612 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 654 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 568 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3106 ; 0.220 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2058 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.158 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.238 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1980 ; 1.858 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3222 ; 3.001 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1237 ; 2.179 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1159 ; 3.448 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8311 -14.5716 67.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.0218 REMARK 3 T33: 0.2007 T12: 0.0629 REMARK 3 T13: -0.1212 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 7.3924 L22: 11.2349 REMARK 3 L33: 7.7243 L12: -0.5306 REMARK 3 L13: -0.8603 L23: 1.7102 REMARK 3 S TENSOR REMARK 3 S11: -0.3263 S12: -0.1029 S13: 0.1680 REMARK 3 S21: 0.5441 S22: 0.4591 S23: -1.6041 REMARK 3 S31: 0.3047 S32: 0.6204 S33: -0.1327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4146 -3.0515 94.8351 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2960 REMARK 3 T33: 0.1973 T12: -0.0362 REMARK 3 T13: -0.0287 T23: -0.0651 REMARK 3 L TENSOR REMARK 3 L11: 2.6176 L22: 5.6520 REMARK 3 L33: 7.9185 L12: -1.5728 REMARK 3 L13: -0.2808 L23: 2.4933 REMARK 3 S TENSOR REMARK 3 S11: 0.3582 S12: 0.3614 S13: -0.1449 REMARK 3 S21: -0.8670 S22: -0.2323 S23: 0.3796 REMARK 3 S31: 0.1859 S32: -0.5338 S33: -0.1259 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3764 16.7298 123.6301 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 1.0612 REMARK 3 T33: 0.4596 T12: 0.1692 REMARK 3 T13: 0.0478 T23: -0.4253 REMARK 3 L TENSOR REMARK 3 L11: 7.9842 L22: 13.8679 REMARK 3 L33: 14.3207 L12: -6.4732 REMARK 3 L13: -6.0959 L23: 8.2368 REMARK 3 S TENSOR REMARK 3 S11: -0.1059 S12: -0.1288 S13: 0.1599 REMARK 3 S21: 0.3670 S22: -1.3083 S23: 1.1360 REMARK 3 S31: -0.5769 S32: -2.8042 S33: 1.4143 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 126 REMARK 3 RESIDUE RANGE : B 127 B 129 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9455 5.2956 111.0745 REMARK 3 T TENSOR REMARK 3 T11: 0.2712 T22: 0.2804 REMARK 3 T33: 0.4225 T12: -0.0388 REMARK 3 T13: -0.0099 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.1695 L22: 4.7064 REMARK 3 L33: 5.9253 L12: -0.2887 REMARK 3 L13: 1.7323 L23: -1.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.1884 S12: 0.0148 S13: 0.2760 REMARK 3 S21: 0.3045 S22: -0.0410 S23: -0.6304 REMARK 3 S31: -0.3903 S32: 0.4491 S33: 0.2293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.097 REMARK 200 MONOCHROMATOR : ASYMMETRICALLY CUT SI(111) REMARK 200 OPTICS : ASYMMETRICALLY CUT SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18210 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19800 REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-12% PEG 8000, 150MM CALCIUM ACETATE, REMARK 280 2-4% PEG MME 750, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 56.26000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL COMPLEX CONSISTS OF FULL-LENTH AGGRECAN AND REMARK 300 TENASCIN-R, REPRESENTED HERE BY FNIII DOMAINS 3-5 FROM TENASCIN REMARK 300 (CHAIN A) AND THE C-TYPE LECTIN DOMAIN OF AGGRECAN (CHAIN B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 PRO A -8 REMARK 465 GLY A -7 REMARK 465 ILE A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 THR A 272 REMARK 465 ARG B -3 REMARK 465 ALA B -2 REMARK 465 ASP B -1 REMARK 465 GLN B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 205 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 106 OD2 ASP A 155 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 5 CD GLU B 5 OE2 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 56 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 -156.50 -87.38 REMARK 500 GLU A 44 90.82 -58.72 REMARK 500 GLU A 134 178.99 -57.86 REMARK 500 ASN A 171 -148.63 60.91 REMARK 500 ASP A 191 28.64 49.52 REMARK 500 SER A 197 56.23 -140.10 REMARK 500 TRP A 206 147.37 -171.14 REMARK 500 THR A 242 -33.23 -130.52 REMARK 500 GLN B 2 -56.86 -152.14 REMARK 500 CYS B 3 122.16 145.74 REMARK 500 GLU B 106 62.58 -104.77 REMARK 500 ARG B 107 16.93 51.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 128 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 64 OD1 REMARK 620 2 ASP B 64 OD2 48.6 REMARK 620 3 GLU B 68 OE2 118.4 70.5 REMARK 620 4 GLU B 68 OE1 99.8 75.2 50.0 REMARK 620 5 ASN B 91 OD1 165.6 140.6 70.4 76.8 REMARK 620 6 GLU B 97 O 91.0 138.4 150.6 129.8 81.0 REMARK 620 7 ASP B 98 OD1 66.9 96.8 119.9 69.9 99.0 69.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 129 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 68 OE1 REMARK 620 2 ASP B 98 OD1 69.5 REMARK 620 3 ASP B 98 OD2 117.6 49.7 REMARK 620 4 HOH B 139 O 70.2 139.0 170.9 REMARK 620 5 HOH B 140 O 152.3 122.6 73.9 97.0 REMARK 620 6 HOH B 141 O 84.2 89.2 82.4 94.2 72.0 REMARK 620 7 HOH B 142 O 82.5 73.4 91.7 94.2 123.8 161.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 127 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 88 OE1 REMARK 620 2 ASP B 90 OD1 69.5 REMARK 620 3 GLU B 97 OE2 142.4 73.8 REMARK 620 4 ASN B 111 OD1 76.0 145.0 141.1 REMARK 620 5 ASP B 112 O 141.4 139.9 69.1 73.7 REMARK 620 6 ASP B 112 OD1 83.3 94.1 91.1 87.9 72.3 REMARK 620 7 HOH B 137 O 110.7 103.1 85.5 83.0 88.8 160.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 129 DBREF 1TDQ A 3 272 UNP Q05546 TENR_RAT 502 771 DBREF 1TDQ B -2 126 UNP P07897 PGCA_RAT 1909 2037 SEQADV 1TDQ GLY A -10 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ SER A -9 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ PRO A -8 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -7 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ ILE A -6 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ SER A -5 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -4 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -3 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -2 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A -1 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ GLY A 0 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ ILE A 1 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ PRO A 2 UNP Q05546 CLONING ARTIFACT SEQADV 1TDQ ARG B -3 UNP P07897 CLONING ARTIFACT SEQRES 1 A 283 GLY SER PRO GLY ILE SER GLY GLY GLY GLY GLY ILE PRO SEQRES 2 A 283 VAL ILE ASP GLY PRO THR GLN ILE LEU VAL ARG ASP VAL SEQRES 3 A 283 SER ASP THR VAL ALA PHE VAL GLU TRP THR PRO PRO ARG SEQRES 4 A 283 ALA LYS VAL ASP PHE ILE LEU LEU LYS TYR GLY LEU VAL SEQRES 5 A 283 GLY GLY GLU GLY GLY LYS THR THR PHE ARG LEU GLN PRO SEQRES 6 A 283 PRO LEU SER GLN TYR SER VAL GLN ALA LEU ARG PRO GLY SEQRES 7 A 283 SER ARG TYR GLU VAL SER ILE SER ALA VAL ARG GLY THR SEQRES 8 A 283 ASN GLU SER ASP ALA SER SER THR GLN PHE THR THR GLU SEQRES 9 A 283 ILE ASP ALA PRO LYS ASN LEU ARG VAL GLY SER ARG THR SEQRES 10 A 283 ALA THR SER LEU ASP LEU GLU TRP ASP ASN SER GLU ALA SEQRES 11 A 283 GLU ALA GLN GLU TYR LYS VAL VAL TYR SER THR LEU ALA SEQRES 12 A 283 GLY GLU GLN TYR HIS GLU VAL LEU VAL PRO LYS GLY ILE SEQRES 13 A 283 GLY PRO THR THR LYS THR THR LEU THR ASP LEU VAL PRO SEQRES 14 A 283 GLY THR GLU TYR GLY VAL GLY ILE SER ALA VAL MET ASN SEQRES 15 A 283 SER LYS GLN SER ILE PRO ALA THR MET ASN ALA ARG THR SEQRES 16 A 283 GLU LEU ASP SER PRO ARG ASP LEU MET VAL THR ALA SER SEQRES 17 A 283 SER GLU THR SER ILE SER LEU ILE TRP THR LYS ALA SER SEQRES 18 A 283 GLY PRO ILE ASP HIS TYR ARG ILE THR PHE THR PRO SER SEQRES 19 A 283 SER GLY ILE SER SER GLU VAL THR VAL PRO ARG ASP ARG SEQRES 20 A 283 THR SER TYR THR LEU THR ASP LEU GLU PRO GLY ALA GLU SEQRES 21 A 283 TYR ILE ILE SER ILE THR ALA GLU ARG GLY ARG GLN GLN SEQRES 22 A 283 SER LEU GLU SER THR VAL ASP ALA PHE THR SEQRES 1 B 130 ARG ALA ASP GLN GLU GLN CYS GLU GLU GLY TRP THR LYS SEQRES 2 B 130 PHE GLN GLY HIS CYS TYR ARG HIS PHE PRO ASP ARG GLU SEQRES 3 B 130 THR TRP VAL ASP ALA GLU ARG ARG CYS ARG GLU GLN GLN SEQRES 4 B 130 SER HIS LEU SER SER ILE VAL THR PRO GLU GLU GLN GLU SEQRES 5 B 130 PHE VAL ASN LYS ASN ALA GLN ASP TYR GLN TRP ILE GLY SEQRES 6 B 130 LEU ASN ASP ARG THR ILE GLU GLY ASP PHE ARG TRP SER SEQRES 7 B 130 ASP GLY HIS SER LEU GLN PHE GLU LYS TRP ARG PRO ASN SEQRES 8 B 130 GLN PRO ASP ASN PHE PHE ALA THR GLY GLU ASP CYS VAL SEQRES 9 B 130 VAL MET ILE TRP HIS GLU ARG GLY GLU TRP ASN ASP VAL SEQRES 10 B 130 PRO CYS ASN TYR GLN LEU PRO PHE THR CYS LYS LYS GLY HET CA B 127 1 HET CA B 128 1 HET CA B 129 1 HETNAM CA CALCIUM ION FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *38(H2 O) HELIX 1 1 THR B 23 GLN B 34 1 12 HELIX 2 2 THR B 43 GLN B 55 1 13 SHEET 1 A 3 THR A 8 VAL A 15 0 SHEET 2 A 3 ALA A 20 THR A 25 -1 O GLU A 23 N LEU A 11 SHEET 3 A 3 GLN A 58 VAL A 61 -1 O VAL A 61 N ALA A 20 SHEET 1 B 4 THR A 48 LEU A 52 0 SHEET 2 B 4 PHE A 33 LEU A 40 -1 N ILE A 34 O LEU A 52 SHEET 3 B 4 ARG A 69 ARG A 78 -1 O SER A 75 N LEU A 35 SHEET 4 B 4 ASN A 81 GLU A 82 -1 O ASN A 81 N ARG A 78 SHEET 1 C 4 THR A 48 LEU A 52 0 SHEET 2 C 4 PHE A 33 LEU A 40 -1 N ILE A 34 O LEU A 52 SHEET 3 C 4 ARG A 69 ARG A 78 -1 O SER A 75 N LEU A 35 SHEET 4 C 4 SER A 86 THR A 91 -1 O PHE A 90 N TYR A 70 SHEET 1 D 3 LYS A 98 ARG A 105 0 SHEET 2 D 3 LEU A 110 ASP A 115 -1 O ASP A 115 N LYS A 98 SHEET 3 D 3 THR A 148 LEU A 153 -1 O THR A 151 N LEU A 112 SHEET 1 E 4 HIS A 137 PRO A 142 0 SHEET 2 E 4 GLU A 123 THR A 130 -1 N TYR A 128 O HIS A 137 SHEET 3 E 4 GLU A 161 MET A 170 -1 O GLY A 163 N SER A 129 SHEET 4 E 4 LYS A 173 GLN A 174 -1 O LYS A 173 N MET A 170 SHEET 1 F 4 HIS A 137 PRO A 142 0 SHEET 2 F 4 GLU A 123 THR A 130 -1 N TYR A 128 O HIS A 137 SHEET 3 F 4 GLU A 161 MET A 170 -1 O GLY A 163 N SER A 129 SHEET 4 F 4 ALA A 178 ARG A 183 -1 O ALA A 182 N TYR A 162 SHEET 1 G 3 ARG A 190 SER A 197 0 SHEET 2 G 3 ILE A 202 THR A 207 -1 O THR A 207 N ARG A 190 SHEET 3 G 3 SER A 238 LEU A 241 -1 O LEU A 241 N ILE A 202 SHEET 1 H 4 SER A 228 PRO A 233 0 SHEET 2 H 4 HIS A 215 THR A 221 -1 N TYR A 216 O VAL A 232 SHEET 3 H 4 TYR A 250 ARG A 258 -1 O SER A 253 N THR A 219 SHEET 4 H 4 GLN A 261 GLN A 262 -1 O GLN A 261 N ARG A 258 SHEET 1 I 4 SER A 228 PRO A 233 0 SHEET 2 I 4 HIS A 215 THR A 221 -1 N TYR A 216 O VAL A 232 SHEET 3 I 4 TYR A 250 ARG A 258 -1 O SER A 253 N THR A 219 SHEET 4 I 4 SER A 266 ALA A 270 -1 O VAL A 268 N ILE A 252 SHEET 1 J 4 THR B 8 PHE B 10 0 SHEET 2 J 4 HIS B 13 GLU B 22 -1 O HIS B 13 N PHE B 10 SHEET 3 J 4 LEU B 119 LYS B 125 -1 O LYS B 125 N CYS B 14 SHEET 4 J 4 HIS B 37 LEU B 38 -1 N HIS B 37 O LYS B 124 SHEET 1 K 4 ARG B 72 TRP B 73 0 SHEET 2 K 4 GLN B 58 ASN B 63 -1 N ASN B 63 O ARG B 72 SHEET 3 K 4 GLU B 97 MET B 102 -1 O MET B 102 N GLN B 58 SHEET 4 K 4 TRP B 110 PRO B 114 -1 O VAL B 113 N CYS B 99 SSBOND 1 CYS B 31 CYS B 123 1555 1555 2.07 SSBOND 2 CYS B 99 CYS B 115 1555 1555 2.05 LINK OD1 ASP B 64 CA CA B 128 1555 1555 2.65 LINK OD2 ASP B 64 CA CA B 128 1555 1555 2.41 LINK OE2 GLU B 68 CA CA B 128 1555 1555 2.54 LINK OE1 GLU B 68 CA CA B 128 1555 1555 2.66 LINK OE1 GLU B 68 CA CA B 129 1555 1555 2.53 LINK OE1 GLN B 88 CA CA B 127 1555 1555 2.35 LINK OD1 ASP B 90 CA CA B 127 1555 1555 2.40 LINK OD1 ASN B 91 CA CA B 128 1555 1555 2.54 LINK OE2 GLU B 97 CA CA B 127 1555 1555 2.43 LINK O GLU B 97 CA CA B 128 1555 1555 2.45 LINK OD1 ASP B 98 CA CA B 128 1555 1555 2.45 LINK OD1 ASP B 98 CA CA B 129 1555 1555 2.61 LINK OD2 ASP B 98 CA CA B 129 1555 1555 2.55 LINK OD1 ASN B 111 CA CA B 127 1555 1555 2.30 LINK O ASP B 112 CA CA B 127 1555 1555 2.48 LINK OD1 ASP B 112 CA CA B 127 1555 1555 2.23 LINK CA CA B 127 O HOH B 137 1555 1555 2.21 LINK CA CA B 129 O HOH B 139 1555 1555 2.26 LINK CA CA B 129 O HOH B 140 1555 1555 2.50 LINK CA CA B 129 O HOH B 141 1555 1555 2.15 LINK CA CA B 129 O HOH B 142 1555 1555 2.84 CISPEP 1 GLN B 88 PRO B 89 0 1.75 SITE 1 AC1 6 GLN B 88 ASP B 90 GLU B 97 ASN B 111 SITE 2 AC1 6 ASP B 112 HOH B 137 SITE 1 AC2 5 ASP B 64 GLU B 68 ASN B 91 GLU B 97 SITE 2 AC2 5 ASP B 98 SITE 1 AC3 6 GLU B 68 ASP B 98 HOH B 139 HOH B 140 SITE 2 AC3 6 HOH B 141 HOH B 142 CRYST1 112.520 86.420 57.600 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017362 0.00000