data_1TEO # _entry.id 1TEO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1TEO RCSB RCSB022589 WWPDB D_1000022589 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2004-12-21 _pdbx_database_PDB_obs_spr.pdb_id 1VQ2 _pdbx_database_PDB_obs_spr.replace_pdb_id 1TEO _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1TEO _pdbx_database_status.recvd_initial_deposition_date 2004-05-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Almog, R.' 1 'Maley, F.' 2 'Maley, G.F.' 3 'MacColl, R.' 4 'Van Roey, P.' 5 # _citation.id primary _citation.title ;Three-dimensional structure of the R115E mutant of T4-bacteriophage 2'-deoxycytidylate deaminase ; _citation.journal_abbrev Biochemistry _citation.journal_volume 43 _citation.page_first 13715 _citation.page_last 13723 _citation.year 2004 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15504034 _citation.pdbx_database_id_DOI 10.1021/bi048928h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Almog, R.' 1 primary 'Maley, F.' 2 primary 'Maley, G.F.' 3 primary 'Maccoll, R.' 4 primary 'Van Roey, P.' 5 # _cell.entry_id 1TEO _cell.length_a 114.528 _cell.length_b 114.528 _cell.length_c 76.950 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TEO _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Deoxycytidylate deaminase' 21197.041 1 3.5.4.12 R115E ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" 308.182 1 ? ? ? ? 4 water nat water 18.015 47 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'dCMP deaminase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKASTVLQIAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW DDILRNAGIEVFNVPKKNLNKLNWENINEFCGE ; _entity_poly.pdbx_seq_one_letter_code_can ;MKASTVLQIAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW DDILRNAGIEVFNVPKKNLNKLNWENINEFCGE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 ALA n 1 4 SER n 1 5 THR n 1 6 VAL n 1 7 LEU n 1 8 GLN n 1 9 ILE n 1 10 ALA n 1 11 TYR n 1 12 LEU n 1 13 VAL n 1 14 SER n 1 15 GLN n 1 16 GLU n 1 17 SER n 1 18 LYS n 1 19 CYS n 1 20 CYS n 1 21 SER n 1 22 TRP n 1 23 LYS n 1 24 VAL n 1 25 GLY n 1 26 ALA n 1 27 VAL n 1 28 ILE n 1 29 GLU n 1 30 LYS n 1 31 ASN n 1 32 GLY n 1 33 ARG n 1 34 ILE n 1 35 ILE n 1 36 SER n 1 37 THR n 1 38 GLY n 1 39 TYR n 1 40 ASN n 1 41 GLY n 1 42 SER n 1 43 PRO n 1 44 ALA n 1 45 GLY n 1 46 GLY n 1 47 VAL n 1 48 ASN n 1 49 CYS n 1 50 CYS n 1 51 ASP n 1 52 TYR n 1 53 ALA n 1 54 ALA n 1 55 GLU n 1 56 GLN n 1 57 GLY n 1 58 TRP n 1 59 LEU n 1 60 LEU n 1 61 ASN n 1 62 LYS n 1 63 PRO n 1 64 LYS n 1 65 HIS n 1 66 ALA n 1 67 ILE n 1 68 ILE n 1 69 GLN n 1 70 GLY n 1 71 HIS n 1 72 LYS n 1 73 PRO n 1 74 GLU n 1 75 CYS n 1 76 VAL n 1 77 SER n 1 78 PHE n 1 79 GLY n 1 80 SER n 1 81 THR n 1 82 ASP n 1 83 ARG n 1 84 PHE n 1 85 VAL n 1 86 LEU n 1 87 ALA n 1 88 LYS n 1 89 GLU n 1 90 HIS n 1 91 ARG n 1 92 SER n 1 93 ALA n 1 94 HIS n 1 95 SER n 1 96 GLU n 1 97 TRP n 1 98 SER n 1 99 SER n 1 100 LYS n 1 101 ASN n 1 102 GLU n 1 103 ILE n 1 104 HIS n 1 105 ALA n 1 106 GLU n 1 107 LEU n 1 108 ASN n 1 109 ALA n 1 110 ILE n 1 111 LEU n 1 112 PHE n 1 113 ALA n 1 114 ALA n 1 115 GLU n 1 116 ASN n 1 117 GLY n 1 118 SER n 1 119 SER n 1 120 ILE n 1 121 GLU n 1 122 GLY n 1 123 ALA n 1 124 THR n 1 125 MET n 1 126 TYR n 1 127 VAL n 1 128 THR n 1 129 LEU n 1 130 SER n 1 131 PRO n 1 132 CYS n 1 133 PRO n 1 134 ASP n 1 135 CYS n 1 136 ALA n 1 137 LYS n 1 138 ALA n 1 139 ILE n 1 140 ALA n 1 141 GLN n 1 142 SER n 1 143 GLY n 1 144 ILE n 1 145 LYS n 1 146 LYS n 1 147 LEU n 1 148 VAL n 1 149 TYR n 1 150 CYS n 1 151 GLU n 1 152 THR n 1 153 TYR n 1 154 ASP n 1 155 LYS n 1 156 ASN n 1 157 LYS n 1 158 PRO n 1 159 GLY n 1 160 TRP n 1 161 ASP n 1 162 ASP n 1 163 ILE n 1 164 LEU n 1 165 ARG n 1 166 ASN n 1 167 ALA n 1 168 GLY n 1 169 ILE n 1 170 GLU n 1 171 VAL n 1 172 PHE n 1 173 ASN n 1 174 VAL n 1 175 PRO n 1 176 LYS n 1 177 LYS n 1 178 ASN n 1 179 LEU n 1 180 ASN n 1 181 LYS n 1 182 LEU n 1 183 ASN n 1 184 TRP n 1 185 GLU n 1 186 ASN n 1 187 ILE n 1 188 ASN n 1 189 GLU n 1 190 PHE n 1 191 CYS n 1 192 GLY n 1 193 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name virus _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteriophage T4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code DCTD_BPT4 _struct_ref.pdbx_db_accession P16006 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKASTVLQIAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS TDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAARNGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGW DDILRNAGIEVFNVPKKNLNKLNWENINEFCGE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1TEO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 193 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P16006 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 193 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 193 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1TEO _struct_ref_seq_dif.mon_id GLU _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 115 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name SWS _struct_ref_seq_dif.pdbx_seq_db_accession_code P16006 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 115 _struct_ref_seq_dif.details ENGINEERED _struct_ref_seq_dif.pdbx_auth_seq_num 115 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1TEO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.44 _exptl_crystal.density_percent_sol 64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, DTT, sodium citrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Brandeis B4' _diffrn_detector.pdbx_collection_date 2002-05-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.286 1.0 2 1.2809 1.0 3 1.000 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.286, 1.2809, 1.000' # _reflns.entry_id 1TEO _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50. _reflns.d_resolution_high 2.2 _reflns.number_obs 15589 _reflns.number_all ? _reflns.percent_possible_obs 99. _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.B_iso_Wilson_estimate 23.2 _reflns.pdbx_redundancy 9.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.3 _reflns_shell.percent_possible_all 99. _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1TEO _refine.ls_number_reflns_obs 15537 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2149024.36 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.59 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1516 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 38.6 _refine.aniso_B[1][1] -0.70 _refine.aniso_B[2][2] -0.70 _refine.aniso_B[3][3] 1.39 _refine.aniso_B[1][2] 3.68 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.398323 _refine.solvent_model_param_bsol 35.9697 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1TEO _refine_analyze.Luzzati_coordinate_error_obs 0.28 _refine_analyze.Luzzati_sigma_a_obs 0.22 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.28 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1320 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 1389 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 49.59 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.69 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 0.77 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.33 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.20 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 1.88 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.34 _refine_ls_shell.number_reflns_R_work 2266 _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.percent_reflns_obs 99.5 _refine_ls_shell.R_factor_R_free 0.32 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 10.3 _refine_ls_shell.number_reflns_R_free 261 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 PDP_DHZ_OH.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM PDP_DHZ_OH.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1TEO _struct.title 'Crystal structure of T4-bacteriophage deoxycytidylate deaminase, mutant R115E' _struct.pdbx_descriptor 'Deoxycytidylate deaminase (E.C.3.5.4.12)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TEO _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text hydrolase # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ;second moleucle of dimer generated by symmetry -x, x+y, 1/2-z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 2 ? GLN A 15 ? LYS A 2 GLN A 15 1 ? 14 HELX_P HELX_P2 2 ASN A 48 ? GLY A 57 ? ASN A 48 GLY A 57 1 ? 10 HELX_P HELX_P3 3 HIS A 90 ? GLU A 102 ? HIS A 90 GLU A 102 1 ? 13 HELX_P HELX_P4 4 HIS A 104 ? GLY A 117 ? HIS A 104 GLY A 117 1 ? 14 HELX_P HELX_P5 5 CYS A 132 ? SER A 142 ? CYS A 132 SER A 142 1 ? 11 HELX_P HELX_P6 6 ASP A 161 ? ALA A 167 ? ASP A 161 ALA A 167 1 ? 7 HELX_P HELX_P7 7 PRO A 175 ? LEU A 179 ? PRO A 175 LEU A 179 5 ? 5 HELX_P HELX_P8 8 ASN A 183 ? ILE A 187 ? ASN A 183 ILE A 187 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 33 ? TYR A 39 ? ARG A 33 TYR A 39 A 2 GLY A 25 ? LYS A 30 ? GLY A 25 LYS A 30 A 3 THR A 124 ? LEU A 129 ? THR A 124 LEU A 129 A 4 LYS A 146 ? GLU A 151 ? LYS A 146 GLU A 151 A 5 GLU A 170 ? ASN A 173 ? GLU A 170 ASN A 173 B 1 LEU A 59 ? LEU A 60 ? LEU A 59 LEU A 60 B 2 VAL A 85 ? LEU A 86 ? VAL A 85 LEU A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 38 ? O GLY A 38 N ALA A 26 ? N ALA A 26 A 2 3 N GLU A 29 ? N GLU A 29 O THR A 124 ? O THR A 124 A 3 4 N MET A 125 ? N MET A 125 O LYS A 146 ? O LYS A 146 A 4 5 N LEU A 147 ? N LEU A 147 O GLU A 170 ? O GLU A 170 B 1 2 N LEU A 60 ? N LEU A 60 O VAL A 85 ? O VAL A 85 # _database_PDB_matrix.entry_id 1TEO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1TEO _atom_sites.fract_transf_matrix[1][1] 0.008731 _atom_sites.fract_transf_matrix[1][2] 0.005041 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010082 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012995 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 CYS 20 20 20 CYS CYS A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 TRP 22 22 22 TRP TRP A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 TRP 58 58 58 TRP TRP A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 LYS 62 62 62 LYS ALA A . n A 1 63 PRO 63 63 ? ? ? A . n A 1 64 LYS 64 64 ? ? ? A . n A 1 65 HIS 65 65 ? ? ? A . n A 1 66 ALA 66 66 ? ? ? A . n A 1 67 ILE 67 67 ? ? ? A . n A 1 68 ILE 68 68 ? ? ? A . n A 1 69 GLN 69 69 ? ? ? A . n A 1 70 GLY 70 70 ? ? ? A . n A 1 71 HIS 71 71 ? ? ? A . n A 1 72 LYS 72 72 ? ? ? A . n A 1 73 PRO 73 73 ? ? ? A . n A 1 74 GLU 74 74 ? ? ? A . n A 1 75 CYS 75 75 ? ? ? A . n A 1 76 VAL 76 76 ? ? ? A . n A 1 77 SER 77 77 ? ? ? A . n A 1 78 PHE 78 78 ? ? ? A . n A 1 79 GLY 79 79 ? ? ? A . n A 1 80 SER 80 80 ? ? ? A . n A 1 81 THR 81 81 ? ? ? A . n A 1 82 ASP 82 82 ? ? ? A . n A 1 83 ARG 83 83 83 ARG ALA A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 SER 99 99 99 SER ALA A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 HIS 104 104 104 HIS HIS A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 MET 125 125 125 MET MET A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 CYS 132 132 132 CYS CYS A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 CYS 135 135 135 CYS CYS A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 CYS 150 150 150 CYS CYS A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 TYR 153 153 153 TYR TYR A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 LYS 157 157 157 LYS ALA A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 TRP 160 160 160 TRP TRP A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 ASN 178 178 178 ASN ASN A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 CYS 191 191 191 CYS CYS A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 GLU 193 193 193 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 701 701 ZN ZN A . C 2 ZN 1 702 702 ZN ZN A . D 3 DU 1 308 308 DU PDP ? . E 4 HOH 1 401 401 HOH WAT ? . E 4 HOH 2 402 402 HOH WAT ? . E 4 HOH 3 403 403 HOH WAT ? . E 4 HOH 4 404 404 HOH WAT ? . E 4 HOH 5 405 405 HOH WAT ? . E 4 HOH 6 406 406 HOH WAT ? . E 4 HOH 7 407 407 HOH WAT ? . E 4 HOH 8 408 408 HOH WAT ? . E 4 HOH 9 409 409 HOH WAT ? . E 4 HOH 10 410 410 HOH WAT ? . E 4 HOH 11 411 411 HOH WAT ? . E 4 HOH 12 412 412 HOH WAT ? . E 4 HOH 13 413 413 HOH WAT ? . E 4 HOH 14 414 414 HOH WAT ? . E 4 HOH 15 415 415 HOH WAT ? . E 4 HOH 16 416 416 HOH WAT ? . E 4 HOH 17 417 417 HOH WAT ? . E 4 HOH 18 418 418 HOH WAT ? . E 4 HOH 19 419 419 HOH WAT ? . E 4 HOH 20 420 420 HOH WAT ? . E 4 HOH 21 421 421 HOH WAT ? . E 4 HOH 22 422 422 HOH WAT ? . E 4 HOH 23 423 423 HOH WAT ? . E 4 HOH 24 424 424 HOH WAT ? . E 4 HOH 25 425 425 HOH WAT ? . E 4 HOH 26 426 426 HOH WAT ? . E 4 HOH 27 427 427 HOH WAT ? . E 4 HOH 28 428 428 HOH WAT ? . E 4 HOH 29 429 429 HOH WAT ? . E 4 HOH 30 430 430 HOH WAT ? . E 4 HOH 31 431 431 HOH WAT ? . E 4 HOH 32 432 432 HOH WAT ? . E 4 HOH 33 433 433 HOH WAT ? . E 4 HOH 34 434 434 HOH WAT ? . E 4 HOH 35 435 435 HOH WAT ? . E 4 HOH 36 436 436 HOH WAT ? . E 4 HOH 37 437 437 HOH WAT ? . E 4 HOH 38 438 438 HOH WAT ? . E 4 HOH 39 439 439 HOH WAT ? . E 4 HOH 40 440 440 HOH WAT ? . E 4 HOH 41 441 441 HOH WAT ? . E 4 HOH 42 442 442 HOH WAT ? . E 4 HOH 43 443 443 HOH WAT ? . E 4 HOH 44 444 444 HOH WAT ? . E 4 HOH 45 445 445 HOH WAT ? . E 4 HOH 46 446 446 HOH WAT ? . E 4 HOH 47 447 447 HOH WAT ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-23 2 'Structure model' 1 1 2004-12-21 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _software.name CNS _software.classification refinement _software.version 0.9 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 . _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 430 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 . _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 430 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 11_655 _pdbx_validate_symm_contact.dist 2.01 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 189 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -115.70 _pdbx_validate_torsion.psi -75.83 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 62 ? CG ? A LYS 62 CG 2 1 Y 1 A LYS 62 ? CD ? A LYS 62 CD 3 1 Y 1 A LYS 62 ? CE ? A LYS 62 CE 4 1 Y 1 A LYS 62 ? NZ ? A LYS 62 NZ 5 1 Y 1 A ARG 83 ? CG ? A ARG 83 CG 6 1 Y 1 A ARG 83 ? CD ? A ARG 83 CD 7 1 Y 1 A ARG 83 ? NE ? A ARG 83 NE 8 1 Y 1 A ARG 83 ? CZ ? A ARG 83 CZ 9 1 Y 1 A ARG 83 ? NH1 ? A ARG 83 NH1 10 1 Y 1 A ARG 83 ? NH2 ? A ARG 83 NH2 11 1 Y 1 A SER 99 ? OG ? A SER 99 OG 12 1 Y 1 A LYS 157 ? CG ? A LYS 157 CG 13 1 Y 1 A LYS 157 ? CD ? A LYS 157 CD 14 1 Y 1 A LYS 157 ? CE ? A LYS 157 CE 15 1 Y 1 A LYS 157 ? NZ ? A LYS 157 NZ 16 1 N 1 . DU 308 ? OP3 ? D DU 1 OP3 17 1 N 1 . DU 308 ? OP1 ? D DU 1 OP1 18 1 N 1 . DU 308 ? OP2 ? D DU 1 OP2 19 1 N 1 . DU 308 ? "O5'" ? D DU 1 "O5'" 20 1 N 1 . DU 308 ? "C5'" ? D DU 1 "C5'" 21 1 N 1 . DU 308 ? "C4'" ? D DU 1 "C4'" 22 1 N 1 . DU 308 ? "O4'" ? D DU 1 "O4'" 23 1 N 1 . DU 308 ? "C3'" ? D DU 1 "C3'" 24 1 N 1 . DU 308 ? "O3'" ? D DU 1 "O3'" 25 1 N 1 . DU 308 ? "C2'" ? D DU 1 "C2'" 26 1 N 1 . DU 308 ? "C1'" ? D DU 1 "C1'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 63 ? A PRO 63 2 1 Y 1 A LYS 64 ? A LYS 64 3 1 Y 1 A HIS 65 ? A HIS 65 4 1 Y 1 A ALA 66 ? A ALA 66 5 1 Y 1 A ILE 67 ? A ILE 67 6 1 Y 1 A ILE 68 ? A ILE 68 7 1 Y 1 A GLN 69 ? A GLN 69 8 1 Y 1 A GLY 70 ? A GLY 70 9 1 Y 1 A HIS 71 ? A HIS 71 10 1 Y 1 A LYS 72 ? A LYS 72 11 1 Y 1 A PRO 73 ? A PRO 73 12 1 Y 1 A GLU 74 ? A GLU 74 13 1 Y 1 A CYS 75 ? A CYS 75 14 1 Y 1 A VAL 76 ? A VAL 76 15 1 Y 1 A SER 77 ? A SER 77 16 1 Y 1 A PHE 78 ? A PHE 78 17 1 Y 1 A GLY 79 ? A GLY 79 18 1 Y 1 A SER 80 ? A SER 80 19 1 Y 1 A THR 81 ? A THR 81 20 1 Y 1 A ASP 82 ? A ASP 82 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" DU 4 water HOH #