HEADER TRANSCRIPTION FACTOR 14-NOV-96 1TFB TITLE NMR STUDIES OF HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB: DYNAMICS AND TITLE 2 INTERACTION WITH VP16 ACTIVATION DOMAIN, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TFIIB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CONSTRUCT COMPRISES RESIDUES 1 - 3 AND 112 - 316 OF FULL COMPND 5 LENGTH HUMAN TFIIB; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES MET 1 AND ALA 2 ARE OMITTED FROM THE COMPND 9 COORDINATES, AND SER 3 IS NUMBERED AS SER 111 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: HUMAN TFIIB DELTA 4-111; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 EXPRESSION_SYSTEM_GENE: HUMAN TFIIB DELTA 4-111; SOURCE 12 OTHER_DETAILS: FURTHER DETAILS CAN BE FOUND IN HA ET AL., GENES AND SOURCE 13 DEVELOPMENT 7 (1993) 1021 KEYWDS TRANSCRIPTION FACTOR, HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB, C- KEYWDS 2 TERMINAL CORE DOMAIN, CYCLIN BOX FOLD EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.BAGBY,M.IKURA REVDAT 3 02-MAR-22 1TFB 1 REMARK REVDAT 2 24-FEB-09 1TFB 1 VERSN REVDAT 1 12-MAR-97 1TFB 0 JRNL AUTH F.HAYASHI,R.ISHIMA,D.LIU,K.I.TONG,S.KIM,D.REINBERG,S.BAGBY, JRNL AUTH 2 M.IKURA JRNL TITL HUMAN GENERAL TRANSCRIPTION FACTOR TFIIB: CONFORMATIONAL JRNL TITL 2 VARIABILITY AND INTERACTION WITH VP16 ACTIVATION DOMAIN. JRNL REF BIOCHEMISTRY V. 37 7941 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9609687 JRNL DOI 10.1021/BI9801098 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.B.NIKOLOV,H.CHEN,E.D.HALAY,A.A.USHEVA,K.HISATAKE,D.K.LEE, REMARK 1 AUTH 2 R.G.ROEDER,S.K.BURLEY REMARK 1 TITL CRYSTAL STRUCTURE OF A TFIIB-TBP-TATA-ELEMENT TERNARY REMARK 1 TITL 2 COMPLEX REMARK 1 REF NATURE V. 377 119 1995 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.BAGBY,S.KIM,E.MALDONADO,K.I.TONG,D.REINBERG,M.IKURA REMARK 1 TITL SOLUTION STRUCTURE OF THE C-TERMINAL CORE DOMAIN OF HUMAN REMARK 1 TITL 2 TFIIB: SIMILARITY TO CYCLIN A AND INTERACTION WITH REMARK 1 TITL 3 TATA-BINDING PROTEIN REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 82 857 1995 REMARK 1 REFN ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TFB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176652. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 109 REMARK 465 ALA A 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 112 -64.91 -124.96 REMARK 500 1 GLN A 148 172.89 -46.77 REMARK 500 1 LEU A 151 57.11 -142.89 REMARK 500 1 ALA A 155 75.02 163.12 REMARK 500 1 ILE A 166 -60.37 -92.08 REMARK 500 1 GLU A 171 101.81 168.07 REMARK 500 1 ARG A 175 -92.93 62.48 REMARK 500 1 THR A 176 -152.64 178.51 REMARK 500 1 SER A 187 94.88 45.00 REMARK 500 1 LEU A 202 65.20 -157.48 REMARK 500 1 GLU A 203 -90.84 -49.77 REMARK 500 1 THR A 204 -68.95 -179.08 REMARK 500 1 SER A 205 35.22 78.39 REMARK 500 1 ASP A 207 94.99 -52.54 REMARK 500 1 LEU A 208 21.29 -155.21 REMARK 500 1 ILE A 209 -81.77 -146.98 REMARK 500 1 THR A 210 26.40 43.85 REMARK 500 1 THR A 211 -33.20 -132.75 REMARK 500 1 SER A 220 55.28 -113.21 REMARK 500 1 CYS A 223 36.76 73.44 REMARK 500 1 ASP A 243 82.22 61.04 REMARK 500 1 VAL A 245 63.83 -165.93 REMARK 500 1 PRO A 246 42.78 -81.32 REMARK 500 1 ARG A 248 -92.88 -98.57 REMARK 500 1 ALA A 266 25.99 44.20 REMARK 500 1 ARG A 269 -141.87 -138.98 REMARK 500 1 VAL A 280 -88.78 -86.88 REMARK 500 1 ALA A 281 147.32 -173.81 REMARK 500 1 LEU A 291 57.70 -155.89 REMARK 500 1 ARG A 295 30.85 -179.33 REMARK 500 1 ALA A 296 164.25 163.47 REMARK 500 1 ASP A 298 39.13 -90.34 REMARK 500 1 THR A 302 -23.76 160.70 REMARK 500 1 PHE A 304 93.86 -46.67 REMARK 500 1 PHE A 306 65.83 75.06 REMARK 500 1 ASP A 311 27.40 44.03 REMARK 500 1 LYS A 312 66.33 160.04 REMARK 500 1 LEU A 313 78.43 -115.70 REMARK 500 1 GLN A 315 99.80 71.09 REMARK 500 2 ARG A 112 -48.41 -141.97 REMARK 500 2 ASN A 129 65.69 69.42 REMARK 500 2 PRO A 131 -159.30 -77.88 REMARK 500 2 LYS A 152 28.13 40.17 REMARK 500 2 ALA A 155 83.94 160.72 REMARK 500 2 ILE A 166 -71.97 -80.75 REMARK 500 2 GLU A 171 89.42 162.43 REMARK 500 2 PRO A 174 -158.43 -78.05 REMARK 500 2 ARG A 175 -103.09 59.74 REMARK 500 2 THR A 176 -152.85 178.78 REMARK 500 2 ARG A 185 49.88 -142.56 REMARK 500 REMARK 500 THIS ENTRY HAS 769 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 112 0.25 SIDE CHAIN REMARK 500 1 ARG A 127 0.29 SIDE CHAIN REMARK 500 1 ARG A 132 0.32 SIDE CHAIN REMARK 500 1 ARG A 137 0.30 SIDE CHAIN REMARK 500 1 ARG A 154 0.24 SIDE CHAIN REMARK 500 1 ARG A 169 0.24 SIDE CHAIN REMARK 500 1 ARG A 175 0.26 SIDE CHAIN REMARK 500 1 ARG A 185 0.09 SIDE CHAIN REMARK 500 1 ARG A 193 0.19 SIDE CHAIN REMARK 500 1 ARG A 217 0.15 SIDE CHAIN REMARK 500 1 ARG A 237 0.23 SIDE CHAIN REMARK 500 1 ARG A 248 0.30 SIDE CHAIN REMARK 500 1 ARG A 269 0.15 SIDE CHAIN REMARK 500 1 ARG A 290 0.27 SIDE CHAIN REMARK 500 1 ARG A 295 0.31 SIDE CHAIN REMARK 500 2 ARG A 112 0.22 SIDE CHAIN REMARK 500 2 ARG A 127 0.30 SIDE CHAIN REMARK 500 2 ARG A 132 0.20 SIDE CHAIN REMARK 500 2 ARG A 137 0.32 SIDE CHAIN REMARK 500 2 ARG A 154 0.28 SIDE CHAIN REMARK 500 2 ARG A 169 0.24 SIDE CHAIN REMARK 500 2 ARG A 175 0.28 SIDE CHAIN REMARK 500 2 ARG A 185 0.16 SIDE CHAIN REMARK 500 2 ARG A 193 0.26 SIDE CHAIN REMARK 500 2 ARG A 217 0.10 SIDE CHAIN REMARK 500 2 ARG A 237 0.31 SIDE CHAIN REMARK 500 2 ARG A 248 0.26 SIDE CHAIN REMARK 500 2 ARG A 269 0.21 SIDE CHAIN REMARK 500 2 ARG A 286 0.30 SIDE CHAIN REMARK 500 2 ARG A 290 0.25 SIDE CHAIN REMARK 500 3 ARG A 112 0.30 SIDE CHAIN REMARK 500 3 ARG A 127 0.32 SIDE CHAIN REMARK 500 3 ARG A 132 0.21 SIDE CHAIN REMARK 500 3 ARG A 137 0.11 SIDE CHAIN REMARK 500 3 ARG A 154 0.15 SIDE CHAIN REMARK 500 3 ARG A 169 0.30 SIDE CHAIN REMARK 500 3 ARG A 175 0.22 SIDE CHAIN REMARK 500 3 ARG A 185 0.16 SIDE CHAIN REMARK 500 3 ARG A 193 0.30 SIDE CHAIN REMARK 500 3 ARG A 217 0.27 SIDE CHAIN REMARK 500 3 ARG A 237 0.28 SIDE CHAIN REMARK 500 3 ARG A 248 0.29 SIDE CHAIN REMARK 500 3 ARG A 269 0.22 SIDE CHAIN REMARK 500 3 ARG A 286 0.13 SIDE CHAIN REMARK 500 3 ARG A 290 0.32 SIDE CHAIN REMARK 500 3 ARG A 295 0.12 SIDE CHAIN REMARK 500 4 ARG A 112 0.32 SIDE CHAIN REMARK 500 4 ARG A 127 0.31 SIDE CHAIN REMARK 500 4 ARG A 132 0.24 SIDE CHAIN REMARK 500 4 ARG A 137 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 312 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1TFB A 112 316 UNP Q00403 TF2B_HUMAN 112 316 SEQRES 1 A 208 MET ALA SER ARG ALA MET MET ASN ALA PHE LYS GLU ILE SEQRES 2 A 208 THR THR MET ALA ASP ARG ILE ASN LEU PRO ARG ASN ILE SEQRES 3 A 208 VAL ASP ARG THR ASN ASN LEU PHE LYS GLN VAL TYR GLU SEQRES 4 A 208 GLN LYS SER LEU LYS GLY ARG ALA ASN ASP ALA ILE ALA SEQRES 5 A 208 SER ALA CYS LEU TYR ILE ALA CYS ARG GLN GLU GLY VAL SEQRES 6 A 208 PRO ARG THR PHE LYS GLU ILE CYS ALA VAL SER ARG ILE SEQRES 7 A 208 SER LYS LYS GLU ILE GLY ARG CYS PHE LYS LEU ILE LEU SEQRES 8 A 208 LYS ALA LEU GLU THR SER VAL ASP LEU ILE THR THR GLY SEQRES 9 A 208 ASP PHE MET SER ARG PHE CYS SER ASN LEU CYS LEU PRO SEQRES 10 A 208 LYS GLN VAL GLN MET ALA ALA THR HIS ILE ALA ARG LYS SEQRES 11 A 208 ALA VAL GLU LEU ASP LEU VAL PRO GLY ARG SER PRO ILE SEQRES 12 A 208 SER VAL ALA ALA ALA ALA ILE TYR MET ALA SER GLN ALA SEQRES 13 A 208 SER ALA GLU LYS ARG THR GLN LYS GLU ILE GLY ASP ILE SEQRES 14 A 208 ALA GLY VAL ALA ASP VAL THR ILE ARG GLN SER TYR ARG SEQRES 15 A 208 LEU ILE TYR PRO ARG ALA PRO ASP LEU PHE PRO THR ASP SEQRES 16 A 208 PHE LYS PHE ASP THR PRO VAL ASP LYS LEU PRO GLN LEU HELIX 1 1 ALA A 113 ARG A 127 1 15 HELIX 2 2 ARG A 132 GLN A 144 1 13 HELIX 3 3 ASN A 156 ALA A 167 1 12 HELIX 4 4 PHE A 177 ALA A 182 1 6 HELIX 5 5 LYS A 188 LEU A 202 1 15 HELIX 6 6 PHE A 218 SER A 220 5 3 HELIX 7 7 LYS A 226 LEU A 242 1 17 HELIX 8 8 PRO A 250 ALA A 261 1 12 HELIX 9 9 GLN A 271 ILE A 274 1 4 HELIX 10 10 ASP A 276 ALA A 278 5 3 HELIX 11 11 ASP A 282 ILE A 285 1 4 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1