data_1TFF # _entry.id 1TFF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1TFF pdb_00001tff 10.2210/pdb1tff/pdb RCSB RCSB022604 ? ? WWPDB D_1000022604 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1TFF _pdbx_database_status.recvd_initial_deposition_date 2004-05-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nanao, M.H.' 1 'Tcherniuk, S.O.' 2 'Chroboczek, J.' 3 'Dideberg, O.' 4 'Dessen, A.' 5 'Balakirev, M.Y.' 6 # _citation.id primary _citation.title 'Crystal structure of human otubain 2.' _citation.journal_abbrev 'Embo Rep.' _citation.journal_volume 5 _citation.page_first 783 _citation.page_last 788 _citation.year 2004 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1469-221X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15258613 _citation.pdbx_database_id_DOI 10.1038/sj.embor.7400201 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nanao, M.H.' 1 ? primary 'Tcherniuk, S.O.' 2 ? primary 'Chroboczek, J.' 3 ? primary 'Dideberg, O.' 4 ? primary 'Dessen, A.' 5 ? primary 'Balakirev, M.Y.' 6 ? # _cell.entry_id 1TFF _cell.length_a 46.433 _cell.length_b 65.401 _cell.length_c 76.259 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1TFF _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin thiolesterase protein OTUB2' 27444.861 1 3.4.-.- G49R Otubain-2 ? 2 water nat water 18.015 100 ? ? ? ? # _entity_keywords.entity_id 1 _entity_keywords.text HYDROLASE # _entity_name_com.entity_id 1 _entity_name_com.name ;Otubain 2, OTU domain-containing ubiquitin aldehyde-binding protein 2, Ubiquitin- specific processing protease OTUB2, Deubiquitinating enzyme OTUB2 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQ TPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEE (MSE)DIKDFCTHEVEP(MSE)ATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILY AADKH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQ TPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDI KDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 GLU n 1 4 THR n 1 5 SER n 1 6 PHE n 1 7 ASN n 1 8 LEU n 1 9 ILE n 1 10 SER n 1 11 GLU n 1 12 LYS n 1 13 CYS n 1 14 ASP n 1 15 ILE n 1 16 LEU n 1 17 SER n 1 18 ILE n 1 19 LEU n 1 20 ARG n 1 21 ASP n 1 22 HIS n 1 23 PRO n 1 24 GLU n 1 25 ASN n 1 26 ARG n 1 27 ILE n 1 28 TYR n 1 29 ARG n 1 30 ARG n 1 31 LYS n 1 32 ILE n 1 33 GLU n 1 34 GLU n 1 35 LEU n 1 36 SER n 1 37 LYS n 1 38 ARG n 1 39 PHE n 1 40 THR n 1 41 ALA n 1 42 ILE n 1 43 ARG n 1 44 LYS n 1 45 THR n 1 46 LYS n 1 47 GLY n 1 48 ASP n 1 49 ARG n 1 50 ASN n 1 51 CYS n 1 52 PHE n 1 53 TYR n 1 54 ARG n 1 55 ALA n 1 56 LEU n 1 57 GLY n 1 58 TYR n 1 59 SER n 1 60 TYR n 1 61 LEU n 1 62 GLU n 1 63 SER n 1 64 LEU n 1 65 LEU n 1 66 GLY n 1 67 LYS n 1 68 SER n 1 69 ARG n 1 70 GLU n 1 71 ILE n 1 72 PHE n 1 73 LYS n 1 74 PHE n 1 75 LYS n 1 76 GLU n 1 77 ARG n 1 78 VAL n 1 79 LEU n 1 80 GLN n 1 81 THR n 1 82 PRO n 1 83 ASN n 1 84 ASP n 1 85 LEU n 1 86 LEU n 1 87 ALA n 1 88 ALA n 1 89 GLY n 1 90 PHE n 1 91 GLU n 1 92 GLU n 1 93 HIS n 1 94 LYS n 1 95 PHE n 1 96 ARG n 1 97 ASN n 1 98 PHE n 1 99 PHE n 1 100 ASN n 1 101 ALA n 1 102 PHE n 1 103 TYR n 1 104 SER n 1 105 VAL n 1 106 VAL n 1 107 GLU n 1 108 LEU n 1 109 VAL n 1 110 GLU n 1 111 LYS n 1 112 ASP n 1 113 GLY n 1 114 SER n 1 115 VAL n 1 116 SER n 1 117 SER n 1 118 LEU n 1 119 LEU n 1 120 LYS n 1 121 VAL n 1 122 PHE n 1 123 ASN n 1 124 ASP n 1 125 GLN n 1 126 SER n 1 127 ALA n 1 128 SER n 1 129 ASP n 1 130 HIS n 1 131 ILE n 1 132 VAL n 1 133 GLN n 1 134 PHE n 1 135 LEU n 1 136 ARG n 1 137 LEU n 1 138 LEU n 1 139 THR n 1 140 SER n 1 141 ALA n 1 142 PHE n 1 143 ILE n 1 144 ARG n 1 145 ASN n 1 146 ARG n 1 147 ALA n 1 148 ASP n 1 149 PHE n 1 150 PHE n 1 151 ARG n 1 152 HIS n 1 153 PHE n 1 154 ILE n 1 155 ASP n 1 156 GLU n 1 157 GLU n 1 158 MSE n 1 159 ASP n 1 160 ILE n 1 161 LYS n 1 162 ASP n 1 163 PHE n 1 164 CYS n 1 165 THR n 1 166 HIS n 1 167 GLU n 1 168 VAL n 1 169 GLU n 1 170 PRO n 1 171 MSE n 1 172 ALA n 1 173 THR n 1 174 GLU n 1 175 CYS n 1 176 ASP n 1 177 HIS n 1 178 ILE n 1 179 GLN n 1 180 ILE n 1 181 THR n 1 182 ALA n 1 183 LEU n 1 184 SER n 1 185 GLN n 1 186 ALA n 1 187 LEU n 1 188 SER n 1 189 ILE n 1 190 ALA n 1 191 LEU n 1 192 GLN n 1 193 VAL n 1 194 GLU n 1 195 TYR n 1 196 VAL n 1 197 ASP n 1 198 GLU n 1 199 MET n 1 200 ASP n 1 201 THR n 1 202 ALA n 1 203 LEU n 1 204 ASN n 1 205 HIS n 1 206 HIS n 1 207 VAL n 1 208 PHE n 1 209 PRO n 1 210 GLU n 1 211 ALA n 1 212 ALA n 1 213 THR n 1 214 PRO n 1 215 SER n 1 216 VAL n 1 217 TYR n 1 218 LEU n 1 219 LEU n 1 220 TYR n 1 221 LYS n 1 222 THR n 1 223 SER n 1 224 HIS n 1 225 TYR n 1 226 ASN n 1 227 ILE n 1 228 LEU n 1 229 TYR n 1 230 ALA n 1 231 ALA n 1 232 ASP n 1 233 LYS n 1 234 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'OTUB2, OTB2, OTU2, C14ORF137' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OTUB2_HUMAN _struct_ref.pdbx_db_accession Q96DC9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQ TPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDI KDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1TFF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 234 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96DC9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 234 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 234 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1TFF ARG A 49 ? UNP Q96DC9 GLY 49 'engineered mutation' 49 1 1 1TFF MSE A 158 ? UNP Q96DC9 MET 158 'modified residue' 158 2 1 1TFF MSE A 171 ? UNP Q96DC9 MET 171 'modified residue' 171 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1TFF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.1 _exptl_crystal.density_percent_sol 41.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '14% PEG 4000, 0.1 M HEPES, pH 7.0, 12 % isopropanol and 5 mM DTT., VAPOR DIFFUSION, HANGING DROP, temperature 288.15K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 105 ? 1 2 105 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH ? ? 2 CCD 'ADSC QUANTUM 4' ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? MAD x-ray 2 2 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97630 1.0 2 0.97990 1.0 3 0.98010 1.0 4 0.97950 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE BM30A' ESRF BM30A ? '0.97630, 0.97990, 0.98010' 2 SYNCHROTRON 'ESRF BEAMLINE ID14-4' ESRF ID14-4 ? 0.97950 # _reflns.entry_id 1TFF _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 100 _reflns.number_all 14128 _reflns.number_obs 14128 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.11 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 27 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.273 _reflns_shell.meanI_over_sigI_obs 5.3 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1TFF _refine.ls_number_reflns_obs 13320 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.39 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 99.51 _refine.ls_R_factor_obs 0.19125 _refine.ls_R_factor_all 0.19125 _refine.ls_R_factor_R_work 0.18792 _refine.ls_R_factor_R_free 0.25689 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 700 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.896 _refine.B_iso_mean 26.717 _refine.aniso_B[1][1] -0.08 _refine.aniso_B[2][2] -0.82 _refine.aniso_B[3][3] 0.90 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.234 _refine.pdbx_overall_ESU_R_Free 0.208 _refine.overall_SU_ML 0.119 _refine.overall_SU_B 4.348 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1826 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 1926 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 49.39 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.028 0.021 ? 1859 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1664 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.382 1.941 ? 2505 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.060 3.000 ? 3864 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.707 5.000 ? 219 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.150 0.200 ? 274 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 2055 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.007 0.020 ? 415 'X-RAY DIFFRACTION' ? r_nbd_refined 0.233 0.200 ? 428 'X-RAY DIFFRACTION' ? r_nbd_other 0.253 0.200 ? 1921 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.096 0.200 ? 1155 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.187 0.200 ? 86 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.180 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.319 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.218 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.792 1.500 ? 1102 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.076 2.000 ? 1779 'X-RAY DIFFRACTION' ? r_scbond_it 4.341 3.000 ? 757 'X-RAY DIFFRACTION' ? r_scangle_it 6.521 4.500 ? 726 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.1 _refine_ls_shell.d_res_low 2.151 _refine_ls_shell.number_reflns_R_work 864 _refine_ls_shell.R_factor_R_work 0.158 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1TFF _struct.title 'Structure of Otubain-2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1TFF _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 16 ? ASP A 21 ? LEU A 16 ASP A 21 1 ? 6 HELX_P HELX_P2 2 PRO A 23 ? ILE A 27 ? PRO A 23 ILE A 27 5 ? 5 HELX_P HELX_P3 3 TYR A 28 ? ARG A 38 ? TYR A 28 ARG A 38 1 ? 11 HELX_P HELX_P4 4 ASN A 50 ? LEU A 65 ? ASN A 50 LEU A 65 1 ? 16 HELX_P HELX_P5 5 LYS A 67 ? ALA A 88 ? LYS A 67 ALA A 88 1 ? 22 HELX_P HELX_P6 6 GLU A 91 ? ASP A 112 ? GLU A 91 ASP A 112 1 ? 22 HELX_P HELX_P7 7 SER A 114 ? ASN A 123 ? SER A 114 ASN A 123 1 ? 10 HELX_P HELX_P8 8 ASP A 124 ? ARG A 146 ? ASP A 124 ARG A 146 1 ? 23 HELX_P HELX_P9 9 ARG A 146 ? ARG A 151 ? ARG A 146 ARG A 151 1 ? 6 HELX_P HELX_P10 10 HIS A 152 ? ILE A 154 ? HIS A 152 ILE A 154 5 ? 3 HELX_P HELX_P11 11 ASP A 159 ? VAL A 168 ? ASP A 159 VAL A 168 1 ? 10 HELX_P HELX_P12 12 ASP A 176 ? SER A 188 ? ASP A 176 SER A 188 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 157 C ? ? ? 1_555 A MSE 158 N ? ? A GLU 157 A MSE 158 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale2 covale both ? A MSE 158 C ? ? ? 1_555 A ASP 159 N ? ? A MSE 158 A ASP 159 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale3 covale both ? A PRO 170 C ? ? ? 1_555 A MSE 171 N ? ? A PRO 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale4 covale both ? A MSE 171 C ? ? ? 1_555 A ALA 172 N ? ? A MSE 171 A ALA 172 1_555 ? ? ? ? ? ? ? 1.321 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 39 ? ARG A 43 ? PHE A 39 ARG A 43 A 2 HIS A 224 ? ALA A 230 ? HIS A 224 ALA A 230 A 3 VAL A 216 ? LYS A 221 ? VAL A 216 LYS A 221 A 4 LEU A 191 ? TYR A 195 ? LEU A 191 TYR A 195 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 43 ? N ARG A 43 O ILE A 227 ? O ILE A 227 A 2 3 O LEU A 228 ? O LEU A 228 N TYR A 217 ? N TYR A 217 A 3 4 O TYR A 220 ? O TYR A 220 N GLU A 194 ? N GLU A 194 # _database_PDB_matrix.entry_id 1TFF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1TFF _atom_sites.fract_transf_matrix[1][1] 0.021536 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015290 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013113 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 PHE 6 6 ? ? ? A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 LYS 120 120 120 LYS LYS A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 HIS 130 130 130 HIS HIS A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 SER 140 140 140 SER SER A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 HIS 152 152 152 HIS HIS A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 MSE 158 158 158 MSE MSE A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 PHE 163 163 163 PHE PHE A . n A 1 164 CYS 164 164 164 CYS CYS A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 PRO 170 170 170 PRO PRO A . n A 1 171 MSE 171 171 171 MSE MSE A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 GLU 174 174 174 GLU GLU A . n A 1 175 CYS 175 175 175 CYS CYS A . n A 1 176 ASP 176 176 176 ASP ASP A . n A 1 177 HIS 177 177 177 HIS HIS A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 GLN 185 185 185 GLN GLN A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 TYR 195 195 195 TYR TYR A . n A 1 196 VAL 196 196 196 VAL VAL A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 GLU 198 198 ? ? ? A . n A 1 199 MET 199 199 ? ? ? A . n A 1 200 ASP 200 200 ? ? ? A . n A 1 201 THR 201 201 ? ? ? A . n A 1 202 ALA 202 202 ? ? ? A . n A 1 203 LEU 203 203 ? ? ? A . n A 1 204 ASN 204 204 ? ? ? A . n A 1 205 HIS 205 205 205 HIS HIS A . n A 1 206 HIS 206 206 206 HIS HIS A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 THR 213 213 213 THR THR A . n A 1 214 PRO 214 214 214 PRO PRO A . n A 1 215 SER 215 215 215 SER SER A . n A 1 216 VAL 216 216 216 VAL VAL A . n A 1 217 TYR 217 217 217 TYR TYR A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 TYR 220 220 220 TYR TYR A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 THR 222 222 222 THR THR A . n A 1 223 SER 223 223 223 SER SER A . n A 1 224 HIS 224 224 224 HIS HIS A . n A 1 225 TYR 225 225 225 TYR TYR A . n A 1 226 ASN 226 226 226 ASN ASN A . n A 1 227 ILE 227 227 227 ILE ILE A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 TYR 229 229 229 TYR TYR A . n A 1 230 ALA 230 230 230 ALA ALA A . n A 1 231 ALA 231 231 231 ALA ALA A . n A 1 232 ASP 232 232 232 ASP ASP A . n A 1 233 LYS 233 233 233 LYS LYS A . n A 1 234 HIS 234 234 234 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 235 1 HOH HOH A . B 2 HOH 2 236 2 HOH HOH A . B 2 HOH 3 237 3 HOH HOH A . B 2 HOH 4 238 4 HOH HOH A . B 2 HOH 5 239 5 HOH HOH A . B 2 HOH 6 240 6 HOH HOH A . B 2 HOH 7 241 7 HOH HOH A . B 2 HOH 8 242 8 HOH HOH A . B 2 HOH 9 243 9 HOH HOH A . B 2 HOH 10 244 10 HOH HOH A . B 2 HOH 11 245 11 HOH HOH A . B 2 HOH 12 246 12 HOH HOH A . B 2 HOH 13 247 13 HOH HOH A . B 2 HOH 14 248 14 HOH HOH A . B 2 HOH 15 249 15 HOH HOH A . B 2 HOH 16 250 16 HOH HOH A . B 2 HOH 17 251 17 HOH HOH A . B 2 HOH 18 252 18 HOH HOH A . B 2 HOH 19 253 19 HOH HOH A . B 2 HOH 20 254 20 HOH HOH A . B 2 HOH 21 255 21 HOH HOH A . B 2 HOH 22 256 22 HOH HOH A . B 2 HOH 23 257 23 HOH HOH A . B 2 HOH 24 258 24 HOH HOH A . B 2 HOH 25 259 25 HOH HOH A . B 2 HOH 26 260 26 HOH HOH A . B 2 HOH 27 261 27 HOH HOH A . B 2 HOH 28 262 28 HOH HOH A . B 2 HOH 29 263 29 HOH HOH A . B 2 HOH 30 264 30 HOH HOH A . B 2 HOH 31 265 31 HOH HOH A . B 2 HOH 32 266 32 HOH HOH A . B 2 HOH 33 267 33 HOH HOH A . B 2 HOH 34 268 34 HOH HOH A . B 2 HOH 35 269 35 HOH HOH A . B 2 HOH 36 270 36 HOH HOH A . B 2 HOH 37 271 37 HOH HOH A . B 2 HOH 38 272 38 HOH HOH A . B 2 HOH 39 273 39 HOH HOH A . B 2 HOH 40 274 40 HOH HOH A . B 2 HOH 41 275 41 HOH HOH A . B 2 HOH 42 276 42 HOH HOH A . B 2 HOH 43 277 43 HOH HOH A . B 2 HOH 44 278 44 HOH HOH A . B 2 HOH 45 279 45 HOH HOH A . B 2 HOH 46 280 46 HOH HOH A . B 2 HOH 47 281 47 HOH HOH A . B 2 HOH 48 282 48 HOH HOH A . B 2 HOH 49 283 49 HOH HOH A . B 2 HOH 50 284 50 HOH HOH A . B 2 HOH 51 285 51 HOH HOH A . B 2 HOH 52 286 52 HOH HOH A . B 2 HOH 53 287 53 HOH HOH A . B 2 HOH 54 288 54 HOH HOH A . B 2 HOH 55 289 55 HOH HOH A . B 2 HOH 56 290 56 HOH HOH A . B 2 HOH 57 291 57 HOH HOH A . B 2 HOH 58 292 58 HOH HOH A . B 2 HOH 59 293 59 HOH HOH A . B 2 HOH 60 294 60 HOH HOH A . B 2 HOH 61 295 61 HOH HOH A . B 2 HOH 62 296 62 HOH HOH A . B 2 HOH 63 297 63 HOH HOH A . B 2 HOH 64 298 64 HOH HOH A . B 2 HOH 65 299 65 HOH HOH A . B 2 HOH 66 300 66 HOH HOH A . B 2 HOH 67 301 67 HOH HOH A . B 2 HOH 68 302 68 HOH HOH A . B 2 HOH 69 303 69 HOH HOH A . B 2 HOH 70 304 70 HOH HOH A . B 2 HOH 71 305 71 HOH HOH A . B 2 HOH 72 306 72 HOH HOH A . B 2 HOH 73 307 73 HOH HOH A . B 2 HOH 74 308 74 HOH HOH A . B 2 HOH 75 309 75 HOH HOH A . B 2 HOH 76 310 76 HOH HOH A . B 2 HOH 77 311 77 HOH HOH A . B 2 HOH 78 312 78 HOH HOH A . B 2 HOH 79 313 79 HOH HOH A . B 2 HOH 80 314 80 HOH HOH A . B 2 HOH 81 315 81 HOH HOH A . B 2 HOH 82 316 82 HOH HOH A . B 2 HOH 83 317 83 HOH HOH A . B 2 HOH 84 318 84 HOH HOH A . B 2 HOH 85 319 85 HOH HOH A . B 2 HOH 86 320 86 HOH HOH A . B 2 HOH 87 321 87 HOH HOH A . B 2 HOH 88 322 88 HOH HOH A . B 2 HOH 89 323 89 HOH HOH A . B 2 HOH 90 324 90 HOH HOH A . B 2 HOH 91 325 91 HOH HOH A . B 2 HOH 92 326 92 HOH HOH A . B 2 HOH 93 327 93 HOH HOH A . B 2 HOH 94 328 94 HOH HOH A . B 2 HOH 95 329 95 HOH HOH A . B 2 HOH 96 330 96 HOH HOH A . B 2 HOH 97 331 97 HOH HOH A . B 2 HOH 98 332 98 HOH HOH A . B 2 HOH 99 333 99 HOH HOH A . B 2 HOH 100 334 100 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 158 A MSE 158 ? MET SELENOMETHIONINE 2 A MSE 171 A MSE 171 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_conn 3 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 49 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 328 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 1.32 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 38 ? ? CZ A ARG 38 ? ? NH1 A ARG 38 ? ? 123.86 120.30 3.56 0.50 N 2 1 NE A ARG 38 ? ? CZ A ARG 38 ? ? NH2 A ARG 38 ? ? 117.18 120.30 -3.12 0.50 N 3 1 CG A ARG 54 ? ? CD A ARG 54 ? ? NE A ARG 54 ? ? 95.32 111.80 -16.48 2.10 N 4 1 CD A ARG 54 ? ? NE A ARG 54 ? ? CZ A ARG 54 ? ? 135.43 123.60 11.83 1.40 N 5 1 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH1 A ARG 54 ? ? 130.91 120.30 10.61 0.50 N 6 1 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH2 A ARG 54 ? ? 107.55 120.30 -12.75 0.50 N 7 1 CB A ASP 112 ? ? CG A ASP 112 ? ? OD1 A ASP 112 ? ? 111.41 118.30 -6.89 0.90 N 8 1 CB A ASP 112 ? ? CG A ASP 112 ? ? OD2 A ASP 112 ? ? 123.90 118.30 5.60 0.90 N 9 1 NE A ARG 136 ? ? CZ A ARG 136 ? ? NH1 A ARG 136 ? ? 123.80 120.30 3.50 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 21 ? ? -61.33 -143.54 2 1 HIS A 22 ? ? 10.03 93.58 3 1 VAL A 168 ? ? -120.35 -57.14 4 1 HIS A 206 ? ? 64.16 105.17 5 1 ASP A 232 ? ? -84.03 44.49 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASP A 232 ? ? LYS A 233 ? ? -148.34 2 1 LYS A 233 ? ? HIS A 234 ? ? 141.38 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 49 ? CB ? A ARG 49 CB 2 1 Y 0 A ARG 49 ? CG ? A ARG 49 CG 3 1 Y 0 A ARG 49 ? CD ? A ARG 49 CD 4 1 Y 0 A ARG 49 ? NE ? A ARG 49 NE 5 1 Y 0 A ARG 49 ? CZ ? A ARG 49 CZ 6 1 Y 0 A ARG 49 ? NH1 ? A ARG 49 NH1 7 1 Y 0 A ARG 49 ? NH2 ? A ARG 49 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A PHE 6 ? A PHE 6 7 1 Y 1 A GLU 198 ? A GLU 198 8 1 Y 1 A MET 199 ? A MET 199 9 1 Y 1 A ASP 200 ? A ASP 200 10 1 Y 1 A THR 201 ? A THR 201 11 1 Y 1 A ALA 202 ? A ALA 202 12 1 Y 1 A LEU 203 ? A LEU 203 13 1 Y 1 A ASN 204 ? A ASN 204 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #