HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-JUN-04 1TH5 TITLE SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF NIFU-LIKE PROTEIN FROM TITLE 2 ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIFU1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 154-226; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST32A KEYWDS IRON-SULFUR CLUSTER BINDING, STRUCTURAL GENOMICS, PROGRAM FOR RICE KEYWDS 2 GENOME RESEARCH, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.KUMETA,K.OGURA,M.ASAYAMA,S.KATOH,E.KATOH,F.INAGAKI REVDAT 5 02-MAR-22 1TH5 1 REMARK SEQADV REVDAT 4 09-JUN-09 1TH5 1 REVDAT REVDAT 3 24-FEB-09 1TH5 1 VERSN REVDAT 2 06-JAN-09 1TH5 1 JRNL REVDAT 1 27-SEP-05 1TH5 0 JRNL AUTH H.KUMETA,K.OGURA,M.ASAYAMA,S.KATOH,E.KATOH,K.TESHIMA, JRNL AUTH 2 F.INAGAKI JRNL TITL THE NMR STRUCTURE OF THE DOMAIN II OF A CHLOROPLASTIC JRNL TITL 2 NIFU-LIKE PROTEIN OSNIFU1A. JRNL REF J.BIOMOL.NMR V. 38 161 2007 JRNL REFN ISSN 0925-2738 JRNL PMID 17431550 JRNL DOI 10.1007/S10858-007-9155-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.06 REMARK 3 AUTHORS : WELCH (VNMR), GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TH5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022641. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM OSNIFU1L154-S226 U-15N; REMARK 210 20MM NAPI PH6.0; 100MM NACL; REMARK 210 2.5MM BETA-ME; 0.45MM REMARK 210 OSNIFU1L154-S226 U-15N,13C; 20MM REMARK 210 NAPI PH6.0; 100MM NACL; 2.5MM REMARK 210 BETA-ME REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 23, SPARKY 3.11, CYANA REMARK 210 1.06 REMARK 210 METHOD USED : DISTANCE GEOMETR,Y SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 156 92.66 59.62 REMARK 500 1 ASN A 160 -72.53 -96.59 REMARK 500 1 VAL A 161 -34.18 -33.94 REMARK 500 1 PRO A 170 2.54 -69.78 REMARK 500 1 GLN A 181 90.07 33.63 REMARK 500 1 LEU A 183 -79.61 -72.98 REMARK 500 1 LEU A 194 86.21 -167.67 REMARK 500 1 ALA A 198 57.51 -118.03 REMARK 500 1 ALA A 199 -94.58 -99.89 REMARK 500 1 VAL A 200 59.94 -112.26 REMARK 500 1 ARG A 202 133.05 67.56 REMARK 500 1 THR A 203 -51.25 78.54 REMARK 500 1 VAL A 208 -83.73 -59.22 REMARK 500 1 LEU A 212 -77.62 -47.18 REMARK 500 1 GLU A 214 -80.86 -41.21 REMARK 500 1 GLN A 220 -33.78 -134.84 REMARK 500 1 LEU A 225 -176.81 -59.91 REMARK 500 2 LEU A 156 97.74 52.86 REMARK 500 2 VAL A 161 -33.21 -39.09 REMARK 500 2 PRO A 170 1.92 -69.72 REMARK 500 2 ALA A 173 42.81 -89.90 REMARK 500 2 LEU A 180 -32.98 -173.90 REMARK 500 2 GLN A 181 99.07 -36.22 REMARK 500 2 LEU A 183 -73.60 -76.00 REMARK 500 2 MET A 184 -168.95 -173.40 REMARK 500 2 PRO A 188 3.27 -69.84 REMARK 500 2 PRO A 197 0.43 -69.67 REMARK 500 2 ALA A 199 42.06 -80.53 REMARK 500 2 VAL A 200 -29.41 179.34 REMARK 500 2 THR A 203 -44.02 176.03 REMARK 500 2 GLU A 214 -72.49 -85.14 REMARK 500 2 GLN A 220 -38.39 -139.66 REMARK 500 3 LEU A 156 100.94 58.29 REMARK 500 3 GLU A 158 -35.90 -34.89 REMARK 500 3 ILE A 168 -45.46 -131.75 REMARK 500 3 LEU A 180 -39.50 -133.56 REMARK 500 3 GLN A 181 90.08 34.30 REMARK 500 3 PHE A 182 107.78 -36.96 REMARK 500 3 LEU A 183 -79.78 -68.38 REMARK 500 3 PRO A 188 3.20 -69.73 REMARK 500 3 LEU A 194 81.46 -162.60 REMARK 500 3 THR A 195 -169.66 -114.24 REMARK 500 3 VAL A 201 -33.85 -159.79 REMARK 500 3 ARG A 202 142.68 85.35 REMARK 500 3 THR A 203 -32.45 83.03 REMARK 500 3 VAL A 204 -71.61 -70.14 REMARK 500 3 VAL A 208 -85.73 -65.77 REMARK 500 3 LEU A 212 -73.77 -35.00 REMARK 500 3 GLU A 214 -72.10 -57.14 REMARK 500 3 GLN A 220 -34.91 -136.89 REMARK 500 REMARK 500 THIS ENTRY HAS 310 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q48 RELATED DB: PDB REMARK 900 A STRUCTURAL HOMOLOG DBREF 1TH5 A 154 226 UNP Q84LK7 Q84LK7_ORYSA 154 226 SEQADV 1TH5 MET A 153 UNP Q84LK7 CLONING ARTIFACT SEQRES 1 A 74 MET LEU GLU LEU ASN GLU GLU ASN VAL GLU LYS VAL LEU SEQRES 2 A 74 ASN GLU ILE ARG PRO TYR LEU ALA GLY THR GLY GLY GLY SEQRES 3 A 74 GLY LEU GLN PHE LEU MET ILE LYS GLY PRO ILE VAL LYS SEQRES 4 A 74 VAL ARG LEU THR GLY PRO ALA ALA VAL VAL ARG THR VAL SEQRES 5 A 74 ARG ILE ALA VAL SER LYS LYS LEU ARG GLU LYS ILE PRO SEQRES 6 A 74 SER ILE GLN ILE VAL GLN LEU LEU SER HELIX 1 1 ASN A 157 ASN A 166 1 10 HELIX 2 2 ILE A 168 ALA A 173 1 6 HELIX 3 3 THR A 203 ILE A 216 1 14 SHEET 1 A 3 MET A 184 LYS A 186 0 SHEET 2 A 3 ILE A 189 VAL A 192 -1 O LYS A 191 N MET A 184 SHEET 3 A 3 ILE A 221 LEU A 224 1 O GLN A 223 N VAL A 190 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1