HEADER HYDROLASE/HYDROLASE INHIBITOR 17-NOV-93 1THL TITLE THERMOLYSIN COMPLEXED WITH A NOVEL GLUTARAMIDE DERIVATIVE, N-(1-(2(R, TITLE 2 S)-CARBOXY-4-PHENYLBUTYL) CYCLOPENTYLCARBONYL)-(S)-TRYPTOPHAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS METALLOPROTEINASE, GLUTARAMIDE DERIVATIVE, THERMOLYSIN, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.R.HOLLAND,B.W.MATTHEWS REVDAT 5 09-AUG-23 1THL 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1THL 1 VERSN REVDAT 3 24-FEB-09 1THL 1 VERSN REVDAT 2 28-JUN-05 1THL 1 TITLE KEYWDS EXPDTA JRNL REVDAT 2 2 1 REMARK DBREF SEQADV COMPND REVDAT 2 3 1 SOURCE LINK CONECT MASTER REVDAT 2 4 1 HETATM REVDAT 1 31-JAN-94 1THL 0 JRNL AUTH D.R.HOLLAND,P.L.BARCLAY,J.C.DANILEWICZ,B.W.MATTHEWS,K.JAMES JRNL TITL INHIBITION OF THERMOLYSIN AND NEUTRAL ENDOPEPTIDASE 24.11 BY JRNL TITL 2 A NOVEL GLUTARAMIDE DERIVATIVE; X-RAY STRUCTURE JRNL TITL 3 DETERMINATION OF THE THERMOLYSIN-INHIBITOR COMPLEX JRNL REF BIOCHEMISTRY V. 33 51 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 8286362 JRNL DOI 10.1021/BI00167A007 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.F.MONZINGO,B.W.MATTHEWS REMARK 1 TITL BINDING OF N-CARBOXYMETHYL DIPEPTIDE INHIBITORS TO REMARK 1 TITL 2 THERMOLYSIN DETERMINED BY X-RAY CRYSTALLOGRAPHY: A NOVEL REMARK 1 TITL 3 CLASS OF TRANSITION-STATE ANALOGUES FOR ZINC PEPTIDASES REMARK 1 REF BIOCHEMISTRY V. 23 5724 1984 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.A.HOLMES,B.W.MATTHEWS REMARK 1 TITL STRUCTURE OF THERMOLYSIN REFINED AT 1.6 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 160 623 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.W.MATTHEWS,L.H.WEAVER,W.R.KESTER REMARK 1 TITL THE CONFORMATION OF THERMOLYSIN REMARK 1 REF J.BIOL.CHEM. V. 249 8030 1974 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH B.W.MATTHEWS,P.M.COLMAN,J.N.JANSONIUS,K.TITANI,K.A.WALSH, REMARK 1 AUTH 2 H.NEURA REMARK 1 TITL STRUCTURE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 41 1972 REMARK 1 REFN ISSN 0369-4887 REMARK 1 REFERENCE 5 REMARK 1 AUTH B.W.MATTHEWS,J.N.JANSONIUS,P.N.COLMAN,B.P.SCHOENBORN, REMARK 1 AUTH 2 D.DUPORQUE REMARK 1 TITL THREE DIMENSIONAL STRUCTURE OF THERMOLYSIN REMARK 1 REF NATURE NEW BIOL. V. 238 37 1972 REMARK 1 REFN ISSN 0369-4887 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 33922 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1620 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1620 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 34103 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 12.500 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.017 ; NULL ; 2531 REMARK 3 BOND ANGLES (DEGREES) : 2.536 ; NULL ; 3430 REMARK 3 TORSION ANGLES (DEGREES) : 16.266; 0.000 ; 1443 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.019 ; NULL ; 68 REMARK 3 GENERAL PLANES (A) : 0.027 ; NULL ; 377 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 7.155 ; 0.000 ; 2510 REMARK 3 NON-BONDED CONTACTS (A) : 0.157 ; NULL ; 16 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : 0 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT VERSION 1.0 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : ISOTROPIC REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1THL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 1991 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : GRAPHITE MONOCHROMATOR, REMARK 200 COLLIMATING SLITS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XUONG-HAMLIN SCALING SUITE REMARK 200 DATA SCALING SOFTWARE : XUONG-HAMLIN (DETECTOR SYSTEM) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41090 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 3TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS ACETATE, CALCIUM ACETATE, DMSO, REMARK 280 PH 7.2, DILUTION WITH H2O, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.70000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.50000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.90000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.60000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.50000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.70000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.90000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 485 O HOH A 485 7555 1.23 REMARK 500 O HOH A 418 O HOH A 418 12565 2.03 REMARK 500 O HOH A 369 O HOH A 407 5564 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 143 CD GLU A 143 OE1 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 24 CD1 - CE1 - CZ ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR A 28 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 28 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 37 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TYR A 42 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 46 CB - CG - CD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 TYR A 75 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR A 75 CG - CD1 - CE1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 82 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 93 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 124 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 151 CG - CD1 - CE1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ILE A 168 CA - CB - CG1 ANGL. DEV. = -22.2 DEGREES REMARK 500 ASP A 200 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 TYR A 211 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 211 CG - CD2 - CE2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 215 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TYR A 217 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 220 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 221 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 TYR A 251 CG - CD2 - CE2 ANGL. DEV. = -6.9 DEGREES REMARK 500 TYR A 251 CD1 - CE1 - CZ ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 260 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 260 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 261 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 LYS A 265 CA - CB - CG ANGL. DEV. = -21.1 DEGREES REMARK 500 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 SER A 298 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 81.27 -159.81 REMARK 500 THR A 26 -58.51 75.55 REMARK 500 SER A 92 -164.81 63.22 REMARK 500 SER A 107 -165.24 59.22 REMARK 500 ASN A 111 50.79 -92.60 REMARK 500 GLN A 128 -43.31 -130.55 REMARK 500 THR A 152 -102.86 -111.69 REMARK 500 ASN A 159 -140.75 55.51 REMARK 500 ASN A 183 63.17 37.55 REMARK 500 THR A 194 74.70 37.56 REMARK 500 ILE A 232 -62.64 -93.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3233 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 50.6 REMARK 620 3 ASP A 59 OD1 120.6 70.1 REMARK 620 4 GLN A 61 O 96.2 90.5 87.4 REMARK 620 5 HOH A 419 O 84.9 134.6 154.1 85.1 REMARK 620 6 HOH A 482 O 157.9 148.5 79.1 94.8 76.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3231 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE2 126.7 REMARK 620 3 GLU A 177 OE1 80.1 47.2 REMARK 620 4 ASP A 185 OD1 158.9 74.3 120.8 REMARK 620 5 GLU A 187 O 83.7 142.9 144.7 77.5 REMARK 620 6 GLU A 190 OE1 81.6 124.5 132.0 84.5 75.4 REMARK 620 7 GLU A 190 OE2 100.9 72.2 86.2 83.5 127.8 54.5 REMARK 620 8 HOH A 346 O 101.4 78.1 77.8 83.0 74.9 149.7 149.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 324 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 101.3 REMARK 620 3 GLU A 166 OE2 122.2 96.6 REMARK 620 4 0DB A 320 OG2 114.4 126.6 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3232 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 89.6 REMARK 620 3 ASP A 185 OD2 87.0 91.7 REMARK 620 4 GLU A 190 OE2 83.8 170.0 80.4 REMARK 620 5 HOH A 353 O 86.0 91.2 172.5 95.9 REMARK 620 6 HOH A 475 O 171.6 91.2 101.3 96.4 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3234 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 OG1 73.9 REMARK 620 3 THR A 194 O 74.6 67.1 REMARK 620 4 ILE A 197 O 152.9 100.5 78.8 REMARK 620 5 ASP A 200 OD1 123.4 74.4 130.1 78.4 REMARK 620 6 HOH A 354 O 86.7 126.6 152.9 116.1 76.5 REMARK 620 7 HOH A 480 O 87.0 145.7 80.6 83.5 139.0 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-({1-[(2S)-2-CARBOXY-4-PHENYLBUTYL]CYCLOPENTYL} REMARK 630 CARBONYL)-L-TRYPTOPHAN REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0DB A 320 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: CLT CCM TRP REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0DB A 320 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DENSITY AT POSITION 177 CLEARLY SHOWS RESIDUE GLU, NOT LYS. REMARK 999 AUTHORS MAINTAIN THAT THE SWISSPROT REFERENCE P00800 IS LIKELY TO REMARK 999 BE INCORRECT AT THIS POSITION DBREF 1THL A 1 316 UNP P00800 THER_BACTH 233 548 SEQADV 1THL ASP A 37 UNP P00800 ASN 269 CONFLICT SEQADV 1THL GLU A 119 UNP P00800 GLN 351 CONFLICT SEQADV 1THL GLU A 177 UNP P00800 LYS 409 SEE REMARK 999 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASP GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLU MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET CA A3231 1 HET CA A3232 1 HET CA A3233 1 HET CA A3234 1 HET ZN A 324 1 HET 0DB A 320 35 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM 0DB N-({1-[(2S)-2-CARBOXY-4- HETNAM 2 0DB PHENYLBUTYL]CYCLOPENTYL}CARBONYL)-L-TRYPTOPHAN HETSYN 0DB CCT FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 0DB C28 H32 N2 O5 FORMUL 8 HOH *148(H2 O) HELIX 1 H1 GLY A 3 ARG A 11 1 9 HELIX 2 H2 SER A 65 VAL A 87 165,66 3/10 OF ALPHA-II CONFN 23 HELIX 3 H3 LEU A 133 GLY A 135 5 3 HELIX 4 H4 ILE A 137 ASP A 150 1151 IN ALPHA-II CONFORMATION 14 HELIX 5 H5 GLU A 160 ALA A 180 1180 IN 3/10 CONFORMATION 21 HELIX 6 H6 GLU A 190 VAL A 192 1192 IN 3/10 OR ALPHA-II CONFN 3 HELIX 7 H7 PRO A 208 TYR A 211 5 4 HELIX 8 H8 TYR A 217 LYS A 219 5 3 HELIX 9 H9 ASP A 226 GLY A 229 6LEFT-HAND ALPHA HELIX 4 HELIX 10 H10 ASN A 233 GLN A 246 1233,234 IN 3/10 CONFORMATION 14 HELIX 11 H11 ARG A 260 TYR A 274 1262 IN ALPHA-II CONFORMATION 15 HELIX 12 H12 PHE A 281 TYR A 296 1 16 HELIX 13 H13 GLN A 301 VAL A 313 1313 IN 3/10 CONFORMATION 13 SHEET 1 S1 5 GLN A 31 ASP A 32 0 SHEET 2 S1 5 ILE A 39 ASP A 43 -1 N ILE A 39 O ASP A 32 SHEET 3 S1 5 ILE A 100 TYR A 106 1 N SER A 102 O PHE A 40 SHEET 4 S1 5 GLU A 119 TYR A 122 1 N TYR A 122 O SER A 103 SHEET 5 S1 5 ASN A 112 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 S2 5 GLY A 52 LEU A 54 0 SHEET 2 S2 5 ILE A 39 ASP A 43 -1 N ASP A 43 O SER A 53 SHEET 3 S2 5 ILE A 100 TYR A 106 1 N SER A 102 O PHE A 40 SHEET 4 S2 5 GLU A 119 TYR A 122 1 N TYR A 122 O SER A 103 SHEET 5 S2 5 ASN A 112 TRP A 115 -1 N PHE A 114 O VAL A 121 SHEET 1 S3 5 TRP A 55 ASP A 57 0 SHEET 2 S3 5 TYR A 27 TYR A 29 -1 O TYR A 28 N ASP A 57 SHEET 3 S3 5 ASP A 16 SER A 25 -1 O THR A 23 N TYR A 29 SHEET 4 S3 5 THR A 2 ARG A 11 -1 O THR A 6 N THR A 22 SHEET 5 S3 5 GLN A 61 PHE A 62 -1 N PHE A 62 O VAL A 9 LINK OD1 ASP A 57 CA CA A3233 1555 1555 2.43 LINK OD2 ASP A 57 CA CA A3233 1555 1555 2.68 LINK OD1 ASP A 59 CA CA A3233 1555 1555 2.36 LINK O GLN A 61 CA CA A3233 1555 1555 2.25 LINK OD2 ASP A 138 CA CA A3231 1555 1555 2.33 LINK NE2 HIS A 142 ZN ZN A 324 1555 1555 2.02 LINK NE2 HIS A 146 ZN ZN A 324 1555 1555 2.04 LINK OE2 GLU A 166 ZN ZN A 324 1555 1555 1.99 LINK OE2 GLU A 177 CA CA A3231 1555 1555 2.83 LINK OE1 GLU A 177 CA CA A3231 1555 1555 2.58 LINK OE2 GLU A 177 CA CA A3232 1555 1555 2.40 LINK O ASN A 183 CA CA A3232 1555 1555 2.48 LINK OD1 ASP A 185 CA CA A3231 1555 1555 2.50 LINK OD2 ASP A 185 CA CA A3232 1555 1555 2.40 LINK O GLU A 187 CA CA A3231 1555 1555 2.24 LINK OE1 GLU A 190 CA CA A3231 1555 1555 2.41 LINK OE2 GLU A 190 CA CA A3231 1555 1555 2.49 LINK OE2 GLU A 190 CA CA A3232 1555 1555 2.31 LINK O TYR A 193 CA CA A3234 1555 1555 2.41 LINK OG1 THR A 194 CA CA A3234 1555 1555 2.38 LINK O THR A 194 CA CA A3234 1555 1555 2.44 LINK O ILE A 197 CA CA A3234 1555 1555 2.34 LINK OD1 ASP A 200 CA CA A3234 1555 1555 2.18 LINK OG2 0DB A 320 ZN ZN A 324 1555 1555 2.01 LINK O HOH A 346 CA CA A3231 1555 1555 2.63 LINK O HOH A 353 CA CA A3232 1555 1555 2.38 LINK O HOH A 354 CA CA A3234 1555 1555 2.51 LINK O HOH A 419 CA CA A3233 1555 1555 2.46 LINK O HOH A 475 CA CA A3232 1555 1555 2.34 LINK O HOH A 480 CA CA A3234 1555 1555 2.01 LINK O HOH A 482 CA CA A3233 1555 1555 2.35 CISPEP 1 LEU A 50 PRO A 51 0 5.94 SITE 1 AC1 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC1 6 GLU A 190 HOH A 346 SITE 1 AC2 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC2 6 HOH A 353 HOH A 475 SITE 1 AC3 5 ASP A 57 ASP A 59 GLN A 61 HOH A 419 SITE 2 AC3 5 HOH A 482 SITE 1 AC4 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC4 6 HOH A 354 HOH A 480 SITE 1 AC5 4 HIS A 142 HIS A 146 GLU A 166 0DB A 320 SITE 1 AC6 18 TYR A 110 ASN A 111 ASN A 112 ALA A 113 SITE 2 AC6 18 PHE A 130 VAL A 139 HIS A 142 GLU A 143 SITE 3 AC6 18 HIS A 146 TYR A 157 GLU A 166 ARG A 203 SITE 4 AC6 18 HIS A 231 ZN A 324 HOH A 362 HOH A 500 SITE 5 AC6 18 HOH A 504 HOH A 506 CRYST1 94.100 94.100 131.400 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 0.866101 0.000000 0.000000 0.00000 ORIGX2 -0.500000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010627 0.006135 0.000000 0.00000 SCALE2 0.000000 0.012271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007610 0.00000