HEADER TRANSCRIPTION/DNA 02-JUN-04 1TI9 OBSLTE 26-OCT-04 1TI9 1XS9 TITLE A MODEL OF THE TERNARY COMPLEX FORMED BETWEEN MARA, THE TITLE 2 ALPHA-CTD OF RNA POLYMERASE AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: R(P*GP*AP*TP*TP*TP*AP*GP*CP*AP*AP*AP*AP*CP*GP*TP* COMPND 7 GP*GP*CP*AP*T; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: PROMOTER REGION; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: R(P*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP* COMPND 13 AP*AP*AP*TP*C); COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: PROMOTER REGION; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN; COMPND 19 CHAIN: D; COMPND 20 SYNONYM: RNAP ALPHA SUBUNIT, TRANSCRIPTASE ALPHA CHAIN, COMPND 21 RNA POLYMERASE ALPHA SUBUNIT; COMPND 22 EC: 2.7.7.6; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 GENE: MARA, B1531, Z2170, ECS2138, SF1563, S1690; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 MOL_ID: 4; SOURCE 15 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 16 ORGANISM_COMMON: BACTERIA; SOURCE 17 GENE: RPOA, PEZ, PHS, SEZ, B3295, C4056, Z4665, ECS4160, SOURCE 18 STM3415, STY4383, T4090, SF3327, S4435; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEIN-DNA COMPLEX, TERNARY COMPLEX, MARA, RNA POLYMERASE EXPDTA NMR AUTHOR B.DANGI,A.M.GRONENBORN,J.L.ROSNER,R.G.MARTIN REVDAT 2 26-OCT-04 1TI9 1 OBSLTE REVDAT 1 19-OCT-04 1TI9 0 JRNL AUTH B.DANGI,A.M.GRONENBORN,J.L.ROSNER,R.G.MARTIN JRNL TITL VERSATILITY OF THE CARBOXY-TERMINAL DOMAIN OF THE JRNL TITL 2 ALPHA SUBUNIT OF RNA POLYMERASE IN TRANSCRIPTIONAL JRNL TITL 3 ACTIVATION: USE OF THE DNA CONTACT SITE AS A JRNL TITL 4 PROTEIN CONTACT SITE FOR MARA JRNL REF MOL.MICROBIOL. V. 54 45 2004 JRNL REFN ASTM MOMIEE UK ISSN 0950-382X REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK REMARK 3 AUTHORS : JONES,ZOU,COWAN,KJELDGAARD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TI9 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-2004. REMARK 100 THE RCSB ID CODE IS RCSB022661. REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4* INSTEAD OF O1*. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : AS DESCRIBED IN PAPER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XWINNMR, HADDOCK REMARK 210 METHOD USED : MODEL BASED ON CHEMICAL SHIFT REMARK 210 PERTURBATION MAPPING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY D 246 REMARK 465 SER D 247 REMARK 465 HIS D 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP D 321 CA TRP D 321 C 0.020 REMARK 500 TRP D 321 C PRO D 322 N 0.023 DBREF 1TI9 A 1 129 UNP P27246 MARA_ECOLI 1 129 DBREF 1TI9 D 249 329 UNP Q8ZJ87 RPOA_YERPE 249 329 SEQADV 1TI9 GLY A -2 UNP P27246 CLONING ARTIFACT SEQADV 1TI9 SER A -1 UNP P27246 CLONING ARTIFACT SEQADV 1TI9 HIS A 0 UNP P27246 CLONING ARTIFACT SEQADV 1TI9 GLY D 246 UNP Q8ZJ87 CLONING ARTIFACT SEQADV 1TI9 SER D 247 UNP Q8ZJ87 CLONING ARTIFACT SEQADV 1TI9 HIS D 248 UNP Q8ZJ87 CLONING ARTIFACT SEQRES 1 A 132 GLY SER HIS MET THR MET SER ARG ARG ASN THR ASP ALA SEQRES 2 A 132 ILE THR ILE HIS SER ILE LEU ASP TRP ILE GLU ASP ASN SEQRES 3 A 132 LEU GLU SER PRO LEU SER LEU GLU LYS VAL SER GLU ARG SEQRES 4 A 132 SER GLY TYR SER LYS TRP HIS LEU GLN ARG MET PHE LYS SEQRES 5 A 132 LYS GLU THR GLY HIS SER LEU GLY GLN TYR ILE ARG SER SEQRES 6 A 132 ARG LYS MET THR GLU ILE ALA GLN LYS LEU LYS GLU SER SEQRES 7 A 132 ASN GLU PRO ILE LEU TYR LEU ALA GLU ARG TYR GLY PHE SEQRES 8 A 132 GLU SER GLN GLN THR LEU THR ARG THR PHE LYS ASN TYR SEQRES 9 A 132 PHE ASP VAL PRO PRO HIS LYS TYR ARG MET THR ASN MET SEQRES 10 A 132 GLN GLY GLU SER ARG PHE LEU HIS PRO LEU ASN HIS TYR SEQRES 11 A 132 ASN SER SEQRES 1 B 20 G A T T T A G C A A A A C SEQRES 2 B 20 G T G G C A T SEQRES 1 C 20 A T G C C A C G T T T T G SEQRES 2 C 20 C T A A A T C SEQRES 1 D 84 GLY SER HIS PHE ASP PRO ILE LEU LEU ARG PRO VAL ASP SEQRES 2 D 84 ASP LEU GLU LEU THR VAL ARG SER ALA ASN CYS LEU LYS SEQRES 3 D 84 ALA GLU ALA ILE HIS TYR ILE GLY ASP LEU VAL GLN ARG SEQRES 4 D 84 THR GLU VAL GLU LEU LEU LYS THR PRO ASN LEU GLY LYS SEQRES 5 D 84 LYS SER LEU THR GLU ILE LYS ASP VAL LEU ALA SER ARG SEQRES 6 D 84 GLY LEU SER LEU GLY MET ARG LEU GLU ASN TRP PRO PRO SEQRES 7 D 84 ALA SER ILE ALA ASP GLU HELIX 1 1 ASN A 7 THR A 12 1 6 HELIX 2 2 ILE A 16 ASP A 22 1 7 HELIX 3 3 VAL A 33 GLY A 38 5 6 HELIX 4 4 SER A 40 LYS A 50 1 11 HELIX 5 5 SER A 55 GLU A 74 1 20 HELIX 6 6 PRO A 78 GLY A 87 1 10 HELIX 7 7 SER A 90 ASN A 100 1 11 HELIX 8 8 PRO A 105 THR A 112 1 8 HELIX 9 9 PRO D 256 LEU D 260 5 5 HELIX 10 10 SER D 266 LYS D 271 1 6 HELIX 11 11 TYR D 277 VAL D 282 1 6 HELIX 12 12 THR D 285 LEU D 290 1 6 HELIX 13 13 GLY D 296 LYS D 298 5 3 HELIX 14 14 SER D 299 ARG D 310 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000