HEADER TRANSFERASE(METHYLTRANSFERASE) 24-JAN-94 1TIS TITLE CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE FROM T4 PHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.45; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665 KEYWDS TRANSFERASE(METHYLTRANSFERASE) EXPDTA X-RAY DIFFRACTION AUTHOR J.FINER-MOORE,R.STROUD REVDAT 4 14-FEB-24 1TIS 1 REMARK REVDAT 3 13-JUL-11 1TIS 1 VERSN REVDAT 2 24-FEB-09 1TIS 1 VERSN REVDAT 1 30-APR-94 1TIS 0 JRNL AUTH J.S.FINER-MOORE,G.F.MALEY,F.MALEY,W.R.MONTFORT,R.M.STROUD JRNL TITL CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE FROM T4 PHAGE: JRNL TITL 2 COMPONENT OF A DEOXYNUCLEOSIDE TRIPHOSPHATE-SYNTHESIZING JRNL TITL 3 COMPLEX. JRNL REF BIOCHEMISTRY V. 33 15459 1994 JRNL REFN ISSN 0006-2960 JRNL PMID 7803410 JRNL DOI 10.1021/BI00255A028 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.SCHIFFER,I.J.CLIFTON,V.J.DAVISSON,J.HADJU,D.V.SANTI, REMARK 1 AUTH 2 R.M.STROUD REMARK 1 TITL CRYSTAL STRUCTURE OF A MISFOLDED PROTEIN: HUMAN THYMIDYLATE REMARK 1 TITL 2 SYNTHASE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH W.R.MONTFORT,K.M.PERRY,E.B.FAUMAN,J.S.FINER-MOORE,G.F.MALEY, REMARK 1 AUTH 2 L.HARDY,F.MALEY,R.M.STROUD REMARK 1 TITL STRUCTURE, MULTIPLE SITE BINDING, AND SEGMENTAL REMARK 1 TITL 2 ACCOMMODATION IN THYMIDYLATE SYNTHASE ON BINDING DUMP AND AN REMARK 1 TITL 3 ANTI-FOLATE REMARK 1 REF BIOCHEMISTRY V. 29 6964 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.W.HARDY,J.S.FINER-MOORE,W.R.MONTFORT,M.O.JONES,D.V.SANTI, REMARK 1 AUTH 2 R.M.STROUD REMARK 1 TITL ATOMIC STRUCTURE OF THYMIDYLATE SYNTHASE: TARGET FOR REMARK 1 TITL 2 RATIONAL DRUG DESIGN REMARK 1 REF SCIENCE V. 235 449 1987 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 5537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2331 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.60 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000176705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.40000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.01000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.01000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.60000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.01000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.01000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.20000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.01000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.01000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.60000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.01000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.01000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.20000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 281 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 77 NE2 HIS A 77 CD2 -0.075 REMARK 500 HIS A 101 NE2 HIS A 101 CD2 -0.070 REMARK 500 HIS A 196 NE2 HIS A 196 CD2 -0.079 REMARK 500 HIS A 217 NE2 HIS A 217 CD2 -0.075 REMARK 500 HIS A 222 NE2 HIS A 222 CD2 -0.068 REMARK 500 HIS A 277 NE2 HIS A 277 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 23 CA - C - N ANGL. DEV. = -16.8 DEGREES REMARK 500 THR A 24 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU A 29 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 TRP A 36 CD1 - CG - CD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 TRP A 36 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 THR A 47 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 TRP A 52 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP A 52 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP A 61 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A 61 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 87 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 87 CB - CG - CD1 ANGL. DEV. = -9.0 DEGREES REMARK 500 TRP A 87 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A 87 CG - CD2 - CE3 ANGL. DEV. = 8.1 DEGREES REMARK 500 TYR A 91 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 SER A 102 CA - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 TRP A 113 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP A 113 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 TRP A 143 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A 143 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 MET A 151 CA - CB - CG ANGL. DEV. = 11.0 DEGREES REMARK 500 MET A 158 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 TYR A 160 CA - CB - CG ANGL. DEV. = 12.5 DEGREES REMARK 500 ASN A 166 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 TRP A 173 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 VAL A 178 CA - CB - CG1 ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE A 181 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 LEU A 230 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 231 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 231 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 240 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 TYR A 247 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 258 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 TYR A 260 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASN A 273 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 TYR A 274 CA - CB - CG ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -50.21 -134.05 REMARK 500 ASN A 14 -34.46 -37.14 REMARK 500 ASP A 20 -154.69 -160.55 REMARK 500 ARG A 21 -78.44 -80.33 REMARK 500 THR A 24 -128.81 -167.02 REMARK 500 LYS A 40 37.43 -94.45 REMARK 500 THR A 46 -144.42 -80.00 REMARK 500 THR A 47 114.62 69.01 REMARK 500 LYS A 48 128.17 87.23 REMARK 500 THR A 67 4.64 -153.62 REMARK 500 ASN A 90 -41.73 -175.22 REMARK 500 GLU A 92 -5.20 -45.62 REMARK 500 ASN A 93 -74.08 -139.11 REMARK 500 SER A 102 76.80 14.66 REMARK 500 TYR A 109 -66.19 -18.99 REMARK 500 ASP A 115 50.05 -150.69 REMARK 500 LYS A 131 -51.49 -128.07 REMARK 500 LEU A 132 45.47 -106.21 REMARK 500 ASN A 134 32.11 -82.50 REMARK 500 ARG A 137 37.59 -73.01 REMARK 500 GLN A 138 71.04 -113.60 REMARK 500 TYR A 160 146.76 -173.19 REMARK 500 ARG A 165 -117.59 -70.26 REMARK 500 MET A 220 33.15 -74.35 REMARK 500 VAL A 223 -18.47 -47.75 REMARK 500 GLN A 225 -40.23 169.51 REMARK 500 ARG A 231 -4.42 51.94 REMARK 500 LYS A 235 -61.79 -123.13 REMARK 500 TYR A 247 -44.94 -29.47 REMARK 500 PHE A 249 -60.02 -14.20 REMARK 500 ASP A 268 2.85 -68.39 REMARK 500 ASN A 273 56.17 22.30 REMARK 500 VAL A 275 123.39 -31.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 274 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 287 DBREF 1TIS A 1 286 UNP P00471 TYSY_BPT4 1 286 SEQRES 1 A 286 MET LYS GLN TYR GLN ASP LEU ILE LYS ASP ILE PHE GLU SEQRES 2 A 286 ASN GLY TYR GLU THR ASP ASP ARG THR GLY THR GLY THR SEQRES 3 A 286 ILE ALA LEU PHE GLY SER LYS LEU ARG TRP ASP LEU THR SEQRES 4 A 286 LYS GLY PHE PRO ALA VAL THR THR LYS LYS LEU ALA TRP SEQRES 5 A 286 LYS ALA CYS ILE ALA GLU LEU ILE TRP PHE LEU SER GLY SEQRES 6 A 286 SER THR ASN VAL ASN ASP LEU ARG LEU ILE GLN HIS ASP SEQRES 7 A 286 SER LEU ILE GLN GLY LYS THR VAL TRP ASP GLU ASN TYR SEQRES 8 A 286 GLU ASN GLN ALA LYS ASP LEU GLY TYR HIS SER GLY GLU SEQRES 9 A 286 LEU GLY PRO ILE TYR GLY LYS GLN TRP ARG ASP PHE GLY SEQRES 10 A 286 GLY VAL ASP GLN ILE ILE GLU VAL ILE ASP ARG ILE LYS SEQRES 11 A 286 LYS LEU PRO ASN ASP ARG ARG GLN ILE VAL SER ALA TRP SEQRES 12 A 286 ASN PRO ALA GLU LEU LYS TYR MET ALA LEU PRO PRO CYS SEQRES 13 A 286 HIS MET PHE TYR GLN PHE ASN VAL ARG ASN GLY TYR LEU SEQRES 14 A 286 ASP LEU GLN TRP TYR GLN ARG SER VAL ASP VAL PHE LEU SEQRES 15 A 286 GLY LEU PRO PHE ASN ILE ALA SER TYR ALA THR LEU VAL SEQRES 16 A 286 HIS ILE VAL ALA LYS MET CYS ASN LEU ILE PRO GLY ASP SEQRES 17 A 286 LEU ILE PHE SER GLY GLY ASN THR HIS ILE TYR MET ASN SEQRES 18 A 286 HIS VAL GLU GLN CYS LYS GLU ILE LEU ARG ARG GLU PRO SEQRES 19 A 286 LYS GLU LEU CYS GLU LEU VAL ILE SER GLY LEU PRO TYR SEQRES 20 A 286 LYS PHE ARG TYR LEU SER THR LYS GLU GLN LEU LYS TYR SEQRES 21 A 286 VAL LEU LYS LEU ARG PRO LYS ASP PHE VAL LEU ASN ASN SEQRES 22 A 286 TYR VAL SER HIS PRO PRO ILE LYS GLY LYS MET ALA VAL HET PO4 A 287 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *20(H2 O) HELIX 1 A GLN A 3 ASN A 14 1HAS LONG HYDROGEN BONDS 12 HELIX 2 B TRP A 52 SER A 64 1 13 HELIX 3 C VAL A 69 HIS A 77 1 9 HELIX 4 D TRP A 87 LEU A 98 12 TURNS ALPHA, 1 TURN 3-10 12 HELIX 5 G TYR A 109 ARG A 114 1 6 HELIX 6 H ASP A 120 LEU A 132 1 13 HELIX 7 I PRO A 145 TYR A 150 12 TURNS ALPHA, 1 TURN 3-10 6 HELIX 8 J GLY A 183 MET A 201 1 19 HELIX 9 K VAL A 223 ILE A 229 1 7 HELIX 10 L LYS A 248 LEU A 252 5 5 HELIX 11 M SER A 253 LEU A 262 1 10 SHEET 1 SH1 6 TYR A 16 THR A 18 0 SHEET 2 SH1 6 THR A 26 LEU A 38 -1 N ALA A 28 O TYR A 16 SHEET 3 SH1 6 GLY A 207 MET A 220 -1 N LEU A 209 O TRP A 36 SHEET 4 SH1 6 TYR A 168 VAL A 180 1 N LEU A 171 O ASP A 208 SHEET 5 SH1 6 CYS A 156 ARG A 165 -1 N ARG A 165 O TYR A 168 SHEET 6 SH1 6 GLN A 138 ALA A 142 -1 O GLN A 138 N PHE A 162 SHEET 1 R2 2 GLU A 239 SER A 243 0 SHEET 2 R2 2 ASP A 268 ASN A 272 -1 N ASN A 272 O GLU A 239 SITE 1 AC1 4 ARG A 136 ARG A 137 ARG A 176 SER A 177 CRYST1 68.020 68.020 140.800 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007102 0.00000